LOC110500825 (LOC106609032)


Basic Information

Item Value
gene id LOC110500825
gene name LOC106609032
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 36666611 ~ 36756612 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036956504.1
TACCGCGTCAGAAGTTTTGGTTTTGGAAGAATACTAACGTAGCGAGGCGTAAAAAGACGCCTGAGCAGAGTACTCACAACTGTTTTTTTCAGGGGAAACTGCTGTAGCCCTGAGAACCGGAAACATCCGTTTTCACCACCCCGGCGGAGAGTGGAACACTAACGCTACTGCCTGAACTTTTTTTTTTAGCCCTCCCCCAATCTGTATGTATCACTAATGTCTCTGTTCGATTTGTTGCTTTATTGCAATGGAATGGTAGGACCCATTGGCTAGTAGTGATGGAGACCGAGTTCTAAAACAGCGCAGGTAGAAAAGTGACTCATTTCCACTCCGCTCGGTCGGTTACCGCGAGTATAATAACGTTAAAAGATATCTAGAATGGAGACTGTTGAGCAACTCGTGTCGTTTAACCATATCCCAGTCCAGTTAAACGGAGGCACGCCTTGGGGGTTCACGCTGAAAGGAGGTCTTGAGCACGGAGAACCGCTCATCATCACTAAAatCGAGGAAGGTGGTAAGGCAGAACAATGTAAGAAGCTGAGAGTGGGTGATGAACTGGTGAATATAAACGGATCAGCCCTCTACGGTTCAAGACAGGAAGCTCTTATACTCATCAAGGGATCCTACCGGATACTAAAGATCACCGTATGCAGatgCAGTGTACCTGTGATCAGGCCTCACTCGTGGTACCTGGCCAAGCTTTCATCAACGGAGTCCCCCCACAGTTCTACCcctgtcccccctcctcctcccccgtcCCCCCCATCTGCCATGCAGCTCCATCCTGGGCCCTACACACTACCCTGGCACTCTACAGCAGACAACAGTGATCTGTCTATCCAGTGGAACAAGCTCTCCAGACACTACTCTACAGACAGAAGCAGTTCCCTAAGTAGCATGGACAGCCTTGACCCTCCTAGCAGCCAAGTGTACTACGATTCCCATAATTCCCCAGTGGACCCGGCCATCTTCAACAATAAGAGAGACAATGATTACCACAATTCACCAGTGGACCCTGCTATATTCAACAATATAAGAGACTCTGCCTATAGCTCTTTCTCAGCTAGTTCTAATATGTCAGACTATACTGTCTCATTAAGGCCCGGTGAGGCCTGTTCTATGGAGAATATCCTCCGAAGCCTTGGGCCAGGGGGACCCGCCTGCCGGGTTTATGCCTGTGGCAATGCACCATCCCTGGGGAGGGAGTCGGGCGAGGCTCAGGATGAGACCGGTACCTCAACCCTACTACTAAAGTCGAGGTCGCTTACCAGGCCAAGAGTGAGGCATCCGGAAGCGAAGGAGAGACCATCTTCGTACTGTTTTGAAGAGGAgcggagagaagggagaggggagaggggtggaggcgGAGGGAAGAGGGGTGCTTCAATTCCCCCCCTTCCCCCAACCAGGAAGGACAGTTTTAGGGCCACGAGGGGTCGCTTGGGGATTACAGATGTCAAAGATCAACGATGCATCTCTGCCCCCGTCGGAATTCCCAGCCTCTTCAGTTGCCATGTCGAGGACGATGGCGACGATCCTCAGAATGTTCCTGGTGTTCCGGTTATTCCCAGCTGGAACGGCTATCCCGCTCCCTGCAAGGCTTCAAAGGCAGAGGGAGACATGGGAAATGGGAAAAAGAATGGGGTTGGGAATTTTAAAGGAGATTCTTTGGAGCAATACTACACCCTCATCTCCAAAAAAAAAGAGTCCCTTGTGAATAAGAACTCAGAGATCCAGGAGATCCacccagactccctccacctccctgccCTAGAGATaagctcctcttcctccatccccgGCTCCAGTTCCCTACCTCCAGACAGCTCCATAGATCCAGACCCCCCAGGTGAAGCCAACCACCTCCTCCCCCAGAACAAGCACTGCTCATCTGGTCTCTACAGACAAAGCGTCCCTGAGAAACTCTTATCGCAGCTACGTCATCTAGAGTTTTCCAGTGACTCTTCGGACCATAGCTCCGTCTCCCCCTCCAGCTCCCAGTGGTCTCGCTCCCCCCTTAACCCCCCCAGGGAGGACCTAGGAGGGGATATAGGGAGTCACgacacctccctcctcctcctccagcagaACACGGGGGAGTGGGAACAAAGGAGTCAATGCTCTACCCCAGGATTGGTGGACATTGATGGGATTGGGGAGGCAGGAGAGGTGAGTGTGGTGGTTTGGGAGAGTAGGGAGGTGGTGGCGGCTGCTGGTAATCGCCTCTCGCCCATCCAGGTCCAACACCCCTGGGGTAGGCCTCTGGTGAGTGTTCCAGGGTCATGGGAGCCCTCTGGAGATTGTACACAGGGAGAGGTGAGCTCTGAGCGGATTTGGGAGACCGACTTTGGGCCTCTCAGTGCTGCAGCCAGTGTAGACAGCCTACTGGAGGGAAGTCatagaggaggagcaggaagaagGGATGATAATGAAGGAAAGGTGCTGATGAAGAAACCTAGGAGTCACCGTTCGTCCCGGGCACGCCGTCGTAGCGAACGCTTCGCCACGAACCTCCGTAACGAGATCCAGCACAAGAAGGCCCAGCTGTCCAATAGTAAAGGCCCAGGAGGGTTGCTCTACAGCGGGGAGACAGTTGAGGAAGAAGAAGGTCCAGACCTGAAAATCCAGGACCTCGTGAGGAAAGAGGCTGAGGACGTTGATCCGCCTGCCAAGGAGAGCAGCTCCCAAGGCGTGTACACCTGTTCCGACATCAGCCTCTCAGCTCCAGCTCCTGGAGGTCTGAACAGACTATCCTCTTCTTCCACCCTCCAGCTCCACCAGCCGTCCCTAGCCCCAGTTTCAGCTCTACAACCCCCCAGGGATGAAGAACCTGAACCACCAGGGAAGCAAGACCAAGCTACAGACTCTTCCAGGCCACCCCAGAGGTCCGTCCCAACCTTGCCCAGCTGGGGTATGGGTATCCAGGTCGTGGAGGAGCTAGCTCCAGCTGGTAAGTCCCGCCGATGGAGATGGACACCCGAACATAAACTCCAACCAGAAATTGACACTGACCGAAGGGGGGAGAGGGTCGGAGTGGCCTTGGGGGTGTCAGGACGAGGGAGGGcatcctctgcctcctcttcttcttctaccacttGTTCTTCCCACACTGAGGAGTCTGATATTTTACCTTTCGCGGACCGCTGTAAGTTCTTTGAGGAGACAAGCAGGAGTATATTGGTGTCAAATTTGCCAGGTCTGACGAGACGAATGCAGAGGCCAGATAGACATGAGAGGCAGCCTCATCTGTCAATGCTGGAGAACCAAAGAGGGGGCTATGGACAGGGACAAGCCCAGAGGAGGTACTCTTACCAGGGTGGATTCGAGCGAGAAAGTCCCCTTTTGATTAATACCATGGAGGCCCGGAGACAATCGGTTAGTgggaatagggagagagaaaaggagagggagagagagaagcagagggaaaaagagagggagatggaaagggaggtaagagcaagagagagggaaagggaaagggaggaaagagcaagagaagagagacaaagagaggaaaGGGCTAGACTgagagagctggagatggagagcgaaagggggatagagagggaacaAGATagtgagatggagaaagagagacaaagtgagagagagaggaaaagagagagggagagaaagtcaCTCTGTTTAGCTCAGGATCTTTTTGCCAGTCAATCCCAACCCCGTGCCTACCCCCAGACCCACTCCCATCCCCAAACCCAGATGGAGGCCCCTCGTTCAGCCTTCCACCCGGTCAACACCGCTCTCCTCCAGGATAACCAGGCTCTTCACCAGGGGTATCCACCACAGAGCTACACACCAACAGAGGCGTATCCTGCTGCGTCTCGACCGTTACCGTGGGAACAGACACAGATCAACAGGAAGTTCAGCCTGACCGAGAGggACTACCCCCGGTACAGACGTGATTCATCCACCGGGCCACCAAATTGTGCTATAACAGTAACACctgactaccaccaccaccagcaagTTTCCCAAAGTGGGGGTTGTTGGAATGGCTTGCTGTCTGCCTGTAGTGTGGACGAGGAGGACCATCACCAGACGTCTATGGTGGTTAACCCCACATCATATTCATCTTCATCACTACTACGAAGCAGGGTTATGTCCGAGAACGATCTACACTTTGGCTCCACCCACCGCCGTACCTCACCCTCGGTTGCTATGGTGACACCACTGTCTGAGCTGGAGGAGGGAGGCGGGATCGAAGGGGGAAGAGTGGGAGTGGGGGGAATTAGGGGAGCGGCTAACAAAAATAAGACTCTACCCCCTCCGAGGCCACCTCCCCCCAAATGGGAGCAGTTCCACCGCAGGAGAGCCTCCCACCacaccctcttctcctctcctctcctctccacctctgtttcttcatccatccatccattggtaaaccccacccctcctcctctccctctcataccACCAGAGGGTCCCACCTCTCACTCTTCATCTCACCCATGTCACCCTGAAAAGAGTGAAATGACGCGTCAGCGCTCCTACAGCCTCCCGCCCCAGATGGAGGAGCTAGAGGGGTGCCAGCGCTGCATCAGAAGCCAAGTCCAGGAATTGCGCTTTTCCCAGTCTCCGCCTAGTCCAGGGTTCACACACACGGCCTTCCGGCCGGTGGCCCCGCCCCAAAGAGATAAAGACACTCCCCCTCGCTACAACGACACACTGCCGCCATCAGAAAGCTGTGTCAGGTTGTACAACATGGTTGACCAAGATTCTCCTGCTGTATTGAAGCCTATCTCTCATAGACAGCAGAGGGCCAGGGCTGAGTGGGAGAGAACTCCGTCTCCCAGAGTGCATAGCTTCTCAGGTCAACTCACCATAGAGAATGGCGTTATCTCACCAGAGTCCTACTTCGCTATGAGCtatgaacaacaacaacagttacaGCAGAATAGAAGATTGCGGaatcacccccacaacaacaACGACAAGCCGGAATTGGAACAAGAACTATTGGAACTGAAACCGGAGTCCGATTTTGGCCCGAGCCCCGCCCAGAGCTTGGAACAGGAAGTGGACATCCCCATGGAAACGGACATCGACGACTCCCAGGAGGAGGGGCTTCCAGAGGATGAAGAGCCAATCAGGACAGAGCTACAAGGTTTCGCCCTGCCGGTCACGGTGCTGGAGACAGACATCGACACGCTCCCTGATCAGGAGGCCTCGCCAGCGGgtaggatgacagtggagaatgGGTCTCTGGATGGAGAAATGGAGGACCAGGGGATGAGGACCAGAGAGGAACTCATGGAGGAGCTGTTTCCCCAGAGCATTGAGGGCGAGGCAGGCACAGAGAGCTGGAGAGGGGCCTACCGTAGCCCCAACCTGGAGCACAATACAGACAGCCTGGATAGGCGTTCTGGTGCCAGCTCCAGTTGTTCGTCCTACTACTCTACCTCAGCAGCCAAAGCTCAGCTCCTCACTCAGATGAAAGACTACTGCTCAGACACTAGAgacactgatgatgatgatgaggacctgtcttacaagAGACAGTTGATGGAGAGTCTACGTAAGAAGCTAGGAATTctgagagaggcacagagaggtcTACAGGAGGATATACGGGCTAACGCACAGCTGGGAGAAGAGgTTGAAAGCCTGGTGCTAGCGTTCTGTAAGCCCAATGAGGTGGATAAGTTCAGGATGTTTATCGGGGATATGGATAAGGTGGTCAGtctgcttctgtctctctccGGACGGCTACTTAGGGTTGAGAGCTCACTGGACAACCTGGAGGCCGAGACTGGACACTATGAGAGGctccccctcctggagaAGAAGCGTCAGCTCCTGGTGCAGCTGTCAGAGGCCCAGGACCTCAAAGAACATGTAGACCGACGGGAGCAGGTTGTGGGAAGGGTGCTAAGACGATGCCTCTCCCAAGAAcagCACCGTGACTACAGTCATTACGTCAAGATGAAGGCAGCATTGCTGGTAGAACAGAGGCAGCTGGAGGACAAGATCAGGCTGGGAGAAGAGCAGCTAAGAGGGCTACGGGAGAGCCTAGGGATGGGATTAGGGATGTCCATGGGATATGGGCACTACTAAACCCCAACCAAGAGACCTGAAAGCTGGGCAGATGGATGGGGTATCGACACTATTGAGAGAAAGTGAACAAGGACAGTTAGAGCAGTTAAGAACCTTAAGGGAAAGTCTGTGTTGGGGATGTCCATGTTGATGGGGTATGGACACTATTGAGAGAACTAACACTAACTTAAAGGTGAATTTTGCTTCTTTTTTAAAAAACAACTCTCTATTCCTAACACTTTTTTTGCgatttcacttgtttttgagaaacttaccccaaCCAGTGATTCACTTCCTCATTGTTGTTGTGCAGTACGGGGGCTCTGAAAAAACAGGGTCTCTGAACTAACATGAACAAATGTTCCAAATACGTCCTTTTAGAAATGGAAACACCGAGTttagtgatgcaggtctttagatgttgtacatgtgaaattgtgtaatttcgAACTTTATCCACAACGTTATATTCCATTTTGTGTGGAAATGAATTTCTGGTTGGGGAAAGTATCTCAAAATCAAGTGAAATTGCAATAAAAGTGTATTGACTCTTCTGTGACATGCCATTTACATCAAAATAATATTATATTGTAAAAAAGCAAATTTCTCCTTTAAGGAAACTTTAGAAACGAGTTGATGGTGTTAGGGATGGGCTGGGGGATGTATGTGGGGTTAATTCATTATTGAGTGAAAACCACCCTGCCCAGGGAGACCCTAGAGTGGGGCAGATGGGCTTAGGAATGGGGTTAGGGATAGGGAGAGCCATGGAATGTCTATGGGGTATGGGCACTATGGGGAGACAGGCAACCTACACAAGGAGACCCTAGAGTGGAGTACATTAGCATGGGGGGTGGGGTATGGACACTATTGAGAGAGAACCAACCCAACCTAAGGAGAGCCTGGAGAGCTATGGtagagtttagggttaggggtagagctGAGGGATGTCCATGAAGTATGGGAACTGTAGGGAGACAGCCAACCCACACATGGAGGCCCTAGAGTTGGGTAAATAGGGATGGGGTTAGAGTTGGGGATGGGACATGGGCACTACTTCCTAAAACACTCCAGTACTTTTCCTGACACCAACATCTACACTGTGTTAAACAGAGGTGGCCATTAAAACCCCACAAGAGAATGCATTAAGGCTGCACTTGGCAGTATTTGTCCGTTAAGAAATACACACCTACTCTTTGGTGTTAGACACACTGTTACACCCAAGAGTAACAACTATCGTTCACTTACCAACTGTAACCTCACAATCGCATACTCCATGCACAACAAAACGAGGCCAAAGAATACGctgttgtttagtgtgtgttactgaacaagactggagaaagtatttatttattatttatatcTCTGTTGAGCAATACTGACAGGGAGGATTTGGGGTGCTAGACGAGAGCATTTTCATCAAACTGTTGGCGAGTGCATTGAATACATAGAAATGGATAGAAGGTGCATATGCCAAAAAGCTGCCCATGCTATCACATCAAACATTATTGCAAAGAAAAGCCCTCTATCCAATTCTATGATTGCATATAATCCTATTACAGTAATATGTCcagaaatggagagagacagcTGCTTCTCTCCACTCTCATATAACACTAtactagcctgagtgccagtctgtttgtgctatcatgtgCTATCATGTGCTATCATGCTAACTCCTTAACGGTTATGGCTGGacatgtttggcttgacaatgacggCGATGGAGTTTGCCAAGAGCGCAAACAGATTTGGGGCCTGGAAAACCCTATACTCCATAACGGCATCACATCACTCCttaacactacactaccacaccacGCCTTCGATTGTGTATATTGGTgtagggtgaagtttcccctagacaCTGATCCTGGGTCGGTTTTGCatttttccccactaatggttaaggttaaaaTAGGGGGaggagaagctgatcctaggAAATTTCACCTCGTAGCCCTAAAATTACCACACCATGTCTTGTGTGTCTATGCATTCATCATTATTGTGTGTATTAAATGTTGTGTATAGAAG

Function

NR:

description
protein Shroom4-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036956504.1 True 8100 mRNA 0.51 15 36666611 36756612

Neighbor

gene id symbol gene type direction distance location
si:dkey-183c6.8 LOC106609082 coding upstream 78571 36523371 ~ 36588040 (+)
LOC110500329 LOC106609084 coding upstream 208814 36426140 ~ 36457797 (+)
LOC110500327 NA coding upstream 259102 36405999 ~ 36407509 (+)
LOC110500325 ppp2r5b coding upstream 428782 36189389 ~ 36237829 (+)
LOC118942923 NA coding upstream 542688 36120516 ~ 36123923 (+)
htr2cl1 LOC106609050 coding downstream 459593 37216205 ~ 37242879 (+)
zgc:109889 LOC100194703 coding downstream 491684 37248296 ~ 37314293 (+)
si:dkey-172j4.3 LOC106609052 coding downstream 674184 37430796 ~ 37537824 (+)
LOC110500311 LOC106609056 coding downstream 892890 37649502 ~ 37656769 (+)
LOC110500309 LOC106604291 coding downstream 944829 37701441 ~ 37703347 (+)
G1733135 NA non-coding upstream 26914 36639473 ~ 36639697 (+)
G1733131 NA non-coding upstream 33627 36632764 ~ 36632984 (+)
G1733116 NA non-coding upstream 55765 36610616 ~ 36610846 (+)
G1733115 NA non-coding upstream 56114 36610294 ~ 36610497 (+)
G1733056 NA non-coding upstream 75732 36589563 ~ 36590879 (+)
G1733187 NA non-coding downstream 377 36756989 ~ 36760221 (+)
G1733206 NA non-coding downstream 33622 36790234 ~ 36795077 (+)
G1733224 NA non-coding downstream 53676 36810288 ~ 36810676 (+)
G1733228 NA non-coding downstream 58714 36815326 ~ 36815577 (+)
G1733257 NA non-coding downstream 106817 36863429 ~ 36864198 (+)
G1732735 NA other upstream 624123 36041331 ~ 36042488 (+)
G1732028 NA other upstream 1182257 35439289 ~ 35484354 (+)
LOC110500285 fam19a5 other upstream 2797634 33709461 ~ 33869016 (+)
G1729465 NA other upstream 3344850 33321453 ~ 33321761 (+)
G1734420 NA other downstream 614345 37370957 ~ 37371667 (+)
G1734479 NA other downstream 808816 37565428 ~ 37568953 (+)
cited1 LOC106609035 other downstream 1003723 37758759 ~ 37765562 (+)

Expression


Co-expression Network