si:dkey-171c9.3 (LOC106609066)


Basic Information

Item Value
gene id si:dkey-171c9.3
gene name LOC106609066
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 36896810 ~ 36903172 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021577647.2
tctctctctctctctctctcatatctccgtctcatataacacacacaggaagtgAGTATATGCTCATAACAGTATATCTATTTCCTCATCATGGCCATTTGCATCTCAGCTACAGCAAGCCTGTCATGTCTTCTCTTGCCTGACGCTTCTTTCACAGATAGAAAATGgTTCCAATGGAGGTATTGAATGGGGTCCAAAAAGTTCCAGAACCCAGTCCAGAAAGTGTGAGCCTGAAGGTTCTAGATCCCAGCCCAGACAATGAAAGAACCATTCACGGTTTCGCCCACACCATGGCTGAAGACATAATATACTCAGCTACATATGAGTCCTCATCCGGGTGTCCTCCAGTCCAGGAGAGACTGGCTGAGAAGTTAGCCTCTCTGGCCATCACAGCTGCCTTGAAGGAAGCAATTAGAAGTGAGATATTTTGGCCTAATACAAGATCTTGGTCATTTTCCAACCCCAGCCCATCCTCAGATAGAAGGGAGCAGGGACTACACAATACAAGACATGGGGAGGTTCATATGCACACAGAGATGAGTGGCAATGGTGAGAAACTTCAATATAACCCCAATGTGACCATCAAGTCCCACAGCTCTGGATCATCCACCTCCACTTCACAACCCTCCAAACACACCCACTCCTACTGCTCCTTCTTACCCCAGTCAGGGCTTCCTACAGTGGGATCACTGGATTACCCAGATGCCCCCCCAACCACCCCTCTTTTCCCAGAGATGGTCCAGAGCAGGGCTAGCTTTACCCAAAAACTAAAGGGGGGTTTGGCTAAAGagttcctcccctctccccctccccctacccctaaggaaaagcacagAGATGGGGGGCTCGCATTGGAGACTGTGGGGGAGGTCGAGGACACACAGGAGGGGGAGGATTTCATTGGGCATCTGTTGAGCTCTCTTTCTCTGGAGTGTTCTGAGAGAGAGGAAGTTTGGAAAGAAGAGGAAGAGTTTGATATACCAACAGGTATTTTGATGGACGGTTATGAAGAGCGAGGACCCCACGGAAGGAGAGCCAAGCTGATGGCATATGTGGATGCACTATATGTGGATGCACTCTCTGATGAGATCACCACCTGGATGACAAATAACATGACAAATATTGACGGCCTCTCTCTGATATGTGATCAAATGGTTGATCAAATCATCACATCCTCCATGAGTGAGGTGAGGCTGAGGAAGTACGTTGGAAGGCTGGTCTCAGATGCACTCTCCATGGGATGGGAAGAGCAGAAGGCAGCCTCTCTCCATGACTCCCTGGTTCTCCGGCAGGAGCAGATAGGGAGAAGGGAACCAAACCCAATGGACCAAGGGGCTCATCTAATTGTCTATCCCTATCCAACCAATCCCAACCAGTCATCCAGCATCCAACTTTGCTCACCCAAAACTAATGAGATGGATCTGGATCTGACCACTAACACAGCCCACCCTCCAGCCCACTCGCCAACCTCTGTAATCAGTCAATCCTATGCTGAAAACTTGGCCCGAGCTGTGGTGAGGTGTTGTGTAATGGAAGCCTCCAGGAAGCAGTGTATGTAGCTCTCcagggatgcatcccaaattacACATTAATCCCTGTAtggtggactacttttgaccagatctctGGTCAAAAAAaatgcaccatatagggaatatgtGTAGTTTTCCAGGCTGGTTGGACTGTGTTGGACGGCCTGGTGGTAAAAAATAAACTAACTGACCCCAAGAGGGCGACATTAGAGTAATAGACAGCTCCTgaacaaagtgttggagatgGAAAACAGTTGGTAATGTCAAAACTGATGAGCTTGATATACGACACAACCTTAACACACAATTATGATTAGGTTTGTTACATGAGCTATAGACCTAATTAAGAATGGTCTTTAAATTTGCTAACTTCTGATGATATTGCCACAAGGTTGGAGTTAGTGGTCAAAATGACATGCTCGTATTGTCAGAACCGATGAGGTTGATGTACATGGGCTATAACCTAAATCCAACATGAAGAATGCATTGTTTATGTATAATTGCTTACTGACAATATGCCACAAGGTTAGAGTTAGTGGTCAGACAATGTTGTTGTGCACTTGAACCTGAACTGTAACTTTAACTGAAAGAGAAAATTGACAATATTTGCTTcttcattaattcacatagaagtagtcCATTtcaccccttcaacatgcatactataaacagaccaatctcatcttgtctcctcttattatctttggttgatgaaaaaaaaacaagcatGGTGGAGCACACAAACTACCCATCATCGGATTACTTTCGATatctagaaagtgttttactcaattatttcgcTCACCcatgatgtgattaattataaatagtaattgctattagctcattcatattgtagtttctgTAAGCCGAGAGTTATAAAAATATGACCGCTTGTAATATATCAATCTTTTCTCAGAtagcgctaggacaaatgtaCTGTAGTTTACatttttccggtttggatgattgtgttatgctgtagctacttctgtgaatgtctgaatattgcatccaaaaataaactgttccca

Function

NR:

description
uncharacterized protein LOC110500334

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021577647.2 True 2566 mRNA 0.44 2 36896810 36903172

Neighbor

gene id symbol gene type direction distance location
LOC110500333 LOC106609048 coding downstream 16952 36795734 ~ 36879858 (-)
syt4 LOC106609065 coding downstream 237064 36642784 ~ 36659746 (-)
ccdc166 ccdc166 coding downstream 372786 36519689 ~ 36524024 (-)
plcb3 plcb3 coding downstream 490223 36300905 ~ 36406587 (-)
LOC110500321 rpl34 coding downstream 1161154 35718993 ~ 35735656 (-)
gpr185b LOC106609051 coding upstream 422991 37326163 ~ 37332721 (-)
zgc:92429 LOC106609053 coding upstream 634815 37537987 ~ 37544697 (-)
si:ch211-200p22.4 LOC106609054 coding upstream 641969 37545141 ~ 37602616 (-)
LOC110500313 NA coding upstream 716654 37619826 ~ 37630426 (-)
zgc:162171 LOC106609055 coding upstream 740530 37643702 ~ 37648915 (-)
G1733846 LOC100846954 non-coding downstream 5041 36891429 ~ 36891769 (-)
G1733845 NA non-coding downstream 5709 36890812 ~ 36891101 (-)
G1733839 NA non-coding downstream 16608 36879987 ~ 36880202 (-)
G1733838 NA non-coding downstream 18357 36878056 ~ 36878453 (-)
G1733831 NA non-coding downstream 26830 36869673 ~ 36869980 (-)
G1733969 NA non-coding upstream 68844 36972016 ~ 36992879 (-)
G1734193 NA non-coding upstream 271902 37175074 ~ 37175310 (-)
G1734194 NA non-coding upstream 272840 37176012 ~ 37176402 (-)
G1734198 NA non-coding upstream 275344 37178516 ~ 37178779 (-)
G1734297 NA non-coding upstream 303405 37206577 ~ 37206802 (-)
G1731966 NA other downstream 1601380 35292476 ~ 35295430 (-)
G1731967 NA other downstream 1605056 35291233 ~ 35291754 (-)
G1731917 NA other downstream 1651750 35213717 ~ 35245060 (-)
G1731328 LOC106609102 other downstream 2122932 34773466 ~ 34773878 (-)
G1734384 NA other upstream 431359 37334531 ~ 37334874 (-)
G1735116 LOC106609058 other upstream 863501 37766673 ~ 37772956 (-)
G1735425 NA other upstream 1292808 38195980 ~ 38196372 (-)
G1735740 NA other upstream 1623211 38526383 ~ 38526739 (-)
G1735742 NA other upstream 1624120 38527292 ~ 38527819 (-)

Expression

si:dkey-171c9.3(LOC106609066) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 15.
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si:dkey-171c9.3(LOC106609066) Expression in each Bioproject

Bar chart with 20 bars.
si:dkey-171c9.3(LOC106609066) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 60.
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Co-expression Network