htr2cl1 (LOC106609050)


Basic Information

Item Value
gene id htr2cl1
gene name LOC106609050
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 37216205 ~ 37242879 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036957723.1
AACTGGCCGGCACTCCTCATCCTGGTCATCATCGTGCTGACGGTGTGTGGAAACATCCTGGTCATCCTAGCTGTCTCATTGGAGAAAAAGCTTCAGAATGCCACCAACTTCTTCCTGAGGTCTCTGGCCGTGGCTGACATTCTGGTGGGGATACTAGTGATGCCTGTATCCCTCATCAACATACTCTATGACTATGCTTGGCCCCTGCCCAGTGCATTGTGTCCTATCTGGATCTACCTGGATGTTCTCTTCTCTACAGCCAGTATAATGCACTTGTGTGCTATATCTCTGGATCGATACGTGGCCATAAGAAATCCTATAGAGCACAGCCGTTTCAACTCCAGAACTAAAGCTATGATGAAGATAGCAGCTGTATGGACTATATCTATGGGAGTGTCAATGCCTATCCCGGTCATCGGCCTCCATAACAAGGACAAGGTGTTTGTTGACGGAAGCTGTGTCCTCAACGAGGAGCACTTCATGCTGATTGGCTCGTTCGTTGCCTTCTTCATCCCATTGGTCATCATGGTGGTGTCCTACTACCTAACCGTACAGGTCCTCCAGCGCCAGGCAACCGTCTTCCTCTACGAGGGGAAGACTCCCTCCCATCAGCCACTACACCCGCCACCCACGCCCTCATACCCCAGATCCCCGGCCCCAAACTTCCAAGTCCCACCCATAAACATTGAGGCTCCTCCTCCTAGCAGACAAGGGAGTCTGAGCTGCCAGAAAGGAGCAGAGCATGTCCGGCAGACCAGCCTCCTAAACACCTCCCCCTCAGAGGACATCAGCATAATTCCAAGTTCCGAGGTGGCATCCCAGCTGAGCTCGCCGGCGGGGCATGATCCACGGGACAGTATTGGGAGACGGGGGATGATGCAGGCCATCAAGAACGAGAGGCGAGCCTCCAAGGTGCTGGGGATTGTGTTCTTCCTCTTCCTGATCATGTGGTGTCCTTTCTTCATCACCAATGTCACATACGTCCTCTGCCAGGGTTCATGCAATGAGCCGCTATTAGCCGAGCTCCTCAACGTCTTCGTATGGGTGGGATATATATCCTCCGGAGTTAACCCTTTAGTATATACCTTGTTTAATAAGACATATAGAAGGGCGTTTTCCAGCTATATACGTTGCCAGTATAACACAGGGCCAAACGCCGGAGTTAGTAATAAGTCGCTTGCAGTTACGATGATGCCGTGTCCGTCACATGCCATCGTGCCCATATTTGGACATAATGGTGGGAATGGGAAGATGGGAAGTGTGGACCGGAATAGTAACTGTCGGAATGGTGGTGGAGGGGACCGGGCAGATGGGAATGGGATGATCAGAGGGATGGAACCTGTCGACCCCACAGATGGCAGGATGGGGATGGAGATTGAATGTCCCGGCATAATGTCGGAATTAAAACCCGGAATGTCGGAGCTGAAGCTTTCCGTCGACAGCTTCTGCCACGCCCAGGTGGAGCGCACCAGCAGCgtctgattggttgattggttaaTTGAATTATGGCAGCGCCGCGTCTCATTGGGTGACGATGGATGGACGGAATGGACATCTATTGTGATGCGTGCAAGAGAGGGGGACGATACTGGGTTTGTCTTATAGAGAGACAGTGGACACATCCACAGAGCACAGGGCCAAGGAAGGACCATAGAGATACTAGAAAGACCATCTCTTATCTGTAGATTGTGAAGCCCTCAGTGACTCTGTCCATGTTAAAGGTGGCATTGTGGCACAAGAGCCTTCTATCCAACTCTATGGGAAGGACTCATCTTGGCCTGGATGTAATAGAAAAGTACTTTTTCAATCTAGAAGAAGAAGCCATGAACAAGGCTGAACAGAGAGCGACTCAATACTTAAAATATACCCAAACTCAACTGTATTATGGATTTTAGTAACAGTTCAGCACCATGTTATAACTGGTTAGGACACTACATAAGAATGTAACAGGTCTGAATTGAGCTCTGCAGGTGTGTATAAAAAGGCCAATAATGGTTAATAGGTAGACTAGTAATGTTGAATGGAGAGAGGAATGTAACTGAACACAATATAGCCCCAGTGATAGTGTCATAGCTCCACCTTCTGGTGTCTGTATGAATgcatgaaataaatcatttccaAGAGGGTCGGTGAATGAAGGGGTTGGAAACACTGTGTACAGTGgatctctctcacacatcatAATGTATCACCTCACTCAGATTCACACAGCATTCTTTGAGAAGATCAGTAACAGTCAAGTTAAGGATGAACAGCAGTGCAGGTCCCGAAGGGCTGCAGTGTGCGCATGCTTTTGTCTCACACAGCCAACCTAACTTCACAAGAAGATAATCCCCCTTCTGTCATCTTTACAACCATAGCTATGACCATAACTCAACCATAACCATAGTCTATAGCCCTATCATAGAACAAaccaaatgtacagtatgttagtaaTCCTTCAGGCCTATACAGTATATCCCACTCTGACCTACATCCAAAATTATTCCTACAACCCATAATCAAACGCTGCAACAACCACAACCAAAACACCAGAGCACCTGAATGAATGTATATATGACAACCTCTGACCCCTCTACACAGGTCAAAGTTCAAAGGTCAAAAACGCATCAATTCATTCACTATGATGTCAAGTTCTCTCTTACATAAGGAAGATTGAACAGAAGGTCTAAGCGATCGTCGCTAGTAATTTTGGAGCTTTTATCAGACAAAAAAGATAACGTTGAAAAGacgttgaaaataagtattttgggTTGAAAAGGTGGGTTGCTACAGGCCCATTGACGTGTTTGACATAAAGTCTGACAAAAACATTAAACTAAAAGAATGAAAAGTACTGCAGAGAGGACGGGCGCCTGATCCGAAATCAGTTTGCTTTCCGATTGAGGAGCGAAGTCAAGAAGGTATCTGAAACAATTAATTTTAAGCTGTATATGTTAGCCATAACTGTGTGTGAGTAAAATATAGCTGTTTCTGGTGTAGGGGAATTAGTGCTTCTTGCTAGCACTGAGCTTTCCCTTGTCAGCGTTAGCAAGCCATGCTAATGCTGGGTTTATGACATCTCTTAACTGTGAGCATACAACTGGGAAAAATCCAATTGAACCCCCCTCCAACTCGGAATTACTAGTGGGATACTCATCTCTCATCCCTGTGCCCACACGACATCTCCCACATGCTGAGTTCTGTTATCACCTACTAAGAAAATGACCTTGATAACAGCAGTTAAATGCAAATAGACATAAACATAATGTATTGTATTTATATGGTTTTTTAACACTGTCATTTGTTTACGagcatgatagctgtacttttagtttatggttgacgCAGATTGTTTACCATTCACCAATCGGCATTCTCAATGAGTTCAAAGCATGTAAATGCACACAACTTGTTGCTCCCAGTTTACAGTACAAGTTGTATTTTCCAAGTTTCCCACTTGTCATAAACGCGGCATAATGCCCTGGTCCATAGCTAAAGATATTTTGTGTTATTATTCCATTCCattacaatcaatcaatcaatcaccggTTTTCATTCCATTTACTTGTGAATGTTTGTCAATGACACTTCTCACGTTTTGACTATTTCAATCATCCACAAGACAGTGTTGTTTTTTTCTGTGTGATGCtgctatttatttattattaaaacGTCATTCTAA
>TU1986112
AAACACTGTGTACAGTGgatctctctcacacatcatAATGTATCACCTCACTCAGATTCACACAGCATTCTTTGAGAAGATCAGTAACAGTCAAGTTAAGGATGAACAGCAGTGCAGGTCCCGAAGGGCTGCAGTGTGCGCATGCTTTTGTCTCACACAGCCAACCTAACTTCACAAGAAGATAATCCCCCTTCTGTCATCTTTACAACCATAGCTATGACCATAACTCAACCATAACCATAGTCTATAGCCCTATCATAGAACAAaccaaatgtacagtatgttagtaaTCCTTCAGGCCTATACAGTATATCCCACTCTGACCTACATCCAAAATTATTCCTACAACCCATAATCAAACGCTGCAACAACCACAACCAAAACACCAGAGCACCTGAATGAATGTATATATGACAACCTCTGACCCCTCTACACAGGTCAAAGTTCAAAGGTCAAAAACGCATCAATTCATTCACTATGATGTCAAGTTCTCTCTTACATAAGGAAGATTGAACAGAAGGTCTAAGCGATCGTCGCTAGTAATTTTGGAGCTTTTATCAGACAAAAAAGATAACGTTGAAAAGacgttgaaaataagtattttgggTTGAAAAGGTGGGTTGCTACAGGCCCATTGACGTGTTTGACATAAAGTCTGACAAAAACATTAAACTAAAAGAATGAAAAGTACTGCAGAGAGGACGGGCGCCTGATCCGAAATCAGTTTGCTTTCCGATTGAGGAGCGAAGTCAAGAAGGTATCTGAAACAATTAATTTTAAGCTGTATATGTTAGCCATAACTGTGTGTGAGTAAAATATAGCTGTTTCTGGTCCATAGCTAAAGATATTTTGTGTTATTATTCCATTCCattacaatcaatcaatcaatcaccggTTTTCATTCCATTTACTTGTGAATGTTTGTCAATGACACTTCTCACGTTTTGACTATTTCAATCATCCACAAGACAGTGTTGTTTTTTTCTGTGTGATGCtgctatttatttattattaaaacGTCATTCTAATCTGTG

Function

NR:

description
PREDICTED: 5-hydroxytryptamine receptor 2C-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036957723.1 False 3664 mRNA 0.45 5 37216205 37242873
TU1986112 True 1034 lncRNA 0.38 2 37241356 37242879

Neighbor

gene id symbol gene type direction distance location
LOC110500825 LOC106609032 coding upstream 459593 36666611 ~ 36756612 (+)
si:dkey-183c6.8 LOC106609082 coding upstream 628165 36523371 ~ 36588040 (+)
LOC110500329 LOC106609084 coding upstream 758408 36426140 ~ 36457797 (+)
LOC110500327 NA coding upstream 808696 36405999 ~ 36407509 (+)
LOC110500325 ppp2r5b coding upstream 978376 36189389 ~ 36237829 (+)
zgc:109889 LOC100194703 coding downstream 5423 37248296 ~ 37314293 (+)
si:dkey-172j4.3 LOC106609052 coding downstream 187923 37430796 ~ 37537824 (+)
LOC110500311 LOC106609056 coding downstream 406629 37649502 ~ 37656769 (+)
LOC110500309 LOC106604291 coding downstream 458568 37701441 ~ 37703347 (+)
hdac8 hdac8 coding downstream 478245 37721118 ~ 37757590 (+)
G1734232 NA non-coding upstream 15780 37200186 ~ 37200425 (+)
G1734227 NA non-coding upstream 19260 37196613 ~ 37196945 (+)
G1734205 NA non-coding upstream 33583 37182405 ~ 37182622 (+)
G1734201 NA non-coding upstream 36088 37179901 ~ 37180117 (+)
G1734197 NA non-coding upstream 37144 37178776 ~ 37179061 (+)
G1734411 NA non-coding downstream 115304 37358177 ~ 37358655 (+)
G1734424 NA non-coding downstream 133756 37376629 ~ 37376859 (+)
G1734425 NA non-coding downstream 134084 37376957 ~ 37377281 (+)
G1734427 NA non-coding downstream 149632 37392505 ~ 37392720 (+)
G1733187 NA other upstream 457322 36756989 ~ 36760221 (+)
G1732735 NA other upstream 1173717 36041331 ~ 36042488 (+)
G1732028 NA other upstream 1731851 35439289 ~ 35484354 (+)
LOC110500285 fam19a5 other upstream 3347228 33709461 ~ 33869016 (+)
G1734420 NA other downstream 128084 37370957 ~ 37371667 (+)
G1734479 NA other downstream 322555 37565428 ~ 37568953 (+)
cited1 LOC106609035 other downstream 517462 37758759 ~ 37765562 (+)
G1734960 NA other downstream 800218 38043091 ~ 38045066 (+)

Expression


Co-expression Network