XLOC_036260 (si:ch73-61d6.3)


Basic Information

Item Value
gene id XLOC_036260
gene name si:ch73-61d6.3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 13190314 ~ 13211527 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00070883
GCATTATAAACATTGTGTACATCGTAGGAGTGAACCCTATGGCTCAAAGCTCCAGCAGCTCGTATTATAACCCCATGCTCATGATGTGCCAGAACCTCTACGGCAGCAGTGTGACAGGAATGGGGGCCGGATTTCCAGTTTATAACCAGTACTTGTACCACTACTGCTACGTGGACCCTCAGGAGGCTGTTGCGATGGTTTGTGGGTTCATGGTTATGGTGGCTCTGGCTGTGGCGGCCTTTTTCTCCTACAGGACCAGAAGTAAGATCTGGCAGTATGGCAAACCAAACATCTACTGGGATCGACCTCTGATGGCAGGAACGGAGGGCAGAGATGTGGAGGACTGGGTCAACCATGTACAGGATGGACAGAGTATTCAGGAGGCCTCCATGGTGTTTTCAGAAAAAATGTCTCCTGTTCTGGCTTCGGCTCCCAGTGTGGGCTCCATTCCTGCAAAGACTGGCAGCGTCTTCAGCTCAGAGAACCACAATGTTATCGGTTACCCGGAGCGCTCTTTCAGCCGGCCGTCTCACTGTACATCCCCATCTAGAGAAGTGAGCTCCAGCCCATCCGACCAGACAGACACCATCCGCAAACCCTCTGCCGGCAGGGGCAAGAGGCGCAGGAGGAACCCTGAGCTGGACGAGTCCCAGTACGAAACCGAGTACACGACCGGAGGAGAGACCGCAGACGACTTTGACCAGGATCTGTGGACACGTCTGTATCCGGAGATCACATCTGACCCCCAGCGACACGACTATAAGAAAGAGTTTGACACAGACCTCAGGTCCTACAAGGAACTCTGTGCTGAAATGGATGATATCAACGACCAGATAAACAAGCTGAGCAGAGAACTGGACACCCTCGATGAGGGAACGTCCAAGTATCAGGCTGTTGCAGAGGAATATAATCGTCTGAAAGACTTAAAACGGATGCCGGATTATCAAAACAAGAAGCATCAATGTCGCAAACTGCGCCACAAGCTCTTCCATATTAAACGAATGGTCAAGAACTACGACCGCCGTCAATAATGAGCTCCATTAAACCAGCACCTGTTTTCCTTTTTCACCACCTTAGCATTAAACTAATCATGGGCGGCCATGACGAAGCCTTCAGATCACTGTGACCAAAGTTTCCCCTAACAATGGCTTCACTCGGTGCTTATGATTAACCTAAAGACCGTTGCATTTCAGTAAACCAGGACCAAAAGCGGTCAACCCAACGTATTTTCCATTACCCGGAGCTTGTTCTTTCACTGGAAACATCTGCTTTACTCGGAGCAAGTGACTTTACATGGCTTGTAAAGTGCGATAAAGCTTTT
>TCONS_00070884
ATGTTTGAGAAACAACCCTACGACAGTCCTCCTAAATACACACCTCCATCCAATGGCTTTGGACCCCCGGGGAGCTTCCAGGACCCTCGGAGTGAATTCGACCCCTACCCTGCTCCACCAGGATCCTACTATGTTGGCGAAGAGGTTCCTCAGCATTTCTACAAATGGTTCTCCCCTCCAGGAATCGTCAAGATTATGATAGGAACCGTCATTGTGCTCTGTTTGGGTATCTTCGCCTGCGTGGCCTCGACTTTGGTTTGGGACATGCAGTATGGATATGGATATGGCTCTGGATATCCTGGATATGGAAGTGGGTACGGATACGGCGGTGGATATGGAAGCTATGGATATGGAAGTGGATACGGAAGTGGATATGGATATGGGAGCTACTATAATTCATATCCAACCCCATACTCTGCGAAAACCAGCATGATCGCCGTCGCCGCAATAAACTTCATCATTGCTTTGGGATTTTTTGCTGCCAGCTTCTCCAAAACAAACACTTTCCGCAGCCGGAAGTTTTTCCTGGCGGTACTTGTTGTCTGTTCAATAATGGCGGTGATTCAGGGCATTATAAACATTGTGTACATCGTAGGAGTGAACCCTATGGCTCAAAGCTCCAGCAGCTCGTATTATAACCCCATGCTCATGATGTGCCAGAACCTCTACGGCAGCAGTGTGACAGGAATGGGGGCCGGATTTCCAGTTTATAACCAGTACTTGTACCACTACTGCTACGTGGACCCTCAGGAGGCTGTTGCGATGGTTTGTGGGTTCATGGTTATGGTGGCTCTGGCTGTGGCGGCCTTTTTCTCCTACAGGACCAGAAGTAAGATCTGGCAGTATGGCAAACCAAACATCTACTGGGATCGACCTCTGATGGCAGGAACGGAGGGCAGAGATGTGGAGGACTGGGTCAACCATGTACAGGATGGACAGAGTATTCAGGAGGCCTCCATGGTGTTTTCAGAAAAAATGTCTCCTGTTCTGGCTTCGGCTCCCAGTGTGGGCTCCATTCCTGCAAAGACTGGCAGCGTCTTCAGCTCAGAGAACCACAATCGCTCTTTCAGCCGGCCGTCTCACTGTACATCCCCATCTAGAGAAGTGAGCTCCAGCCCATCCGACCAGACAGACACCATCCGCAAACCCTCTGCCGGCAGGGGCAAGAGGCGCAGGAGGAACCCTGAGCTGGACGAGTCCCAGTACGAAACCGAGTACACGACCGGAGGAGAGACCGCAGACGACTTTGACCAGGATCTGTGGACACGTCTGTATCCGGAGATCACATCTGACCCCCAGCGACACGACTATAAGAAAGAGTTTGACACAGACCTCAGGTCCTACAAGGAACTCTGTGCTGAAATGGATGATATCAACGACCAGATAAACAAGCTGAGCAGAGAACTGGACACCCTCGATGAGGGAACGTCCAAGTATCAGGCTGTTGCAGAGGAATATAATCGTCTGAAAGACTTAAAACGGATGCCGGATTATCAAAACAAGAAGCATCAATGTCGCAAACTGCGCCACAAGCTCTTCCATATTAAACGAATGGTCAAGAACTACGACCGCCGTCAATAA

Function

symbol description
si:ch73-61d6.3 Predicted to act upstream of or within bicellular tight junction assembly. Predicted to be located in bicellular tight junction and plasma membrane. Predicted to be integral component of membrane.

GO:

id name namespace
GO:0070830 bicellular tight junction assembly biological_process
GO:0005886 plasma membrane cellular_component
GO:0005923 bicellular tight junction cellular_component
GO:0030054 cell junction cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-091204-109 Predicted to act upstream of or within bicellular tight junction assembly. Predicted to be located in bicellular tight junction and plasma membrane. Predicted to be integral component of membrane.

Ensembl:

ensembl_id ENSDARG00000057826

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00070883 False 1321 mRNA 0.50 7 13190314 13210959
TCONS_00070884 True 1581 mRNA 0.50 7 13190604 13211527

Neighbor

gene id symbol gene type direction distance location
XLOC_036259 zgc:194990 coding downstream 5325 13161680 ~ 13184989 (-)
XLOC_036258 si:dkey-208b23.5 coding downstream 125984 13052291 ~ 13064330 (-)
XLOC_036257 si:dkey-208b23.5 coding downstream 144225 13036221 ~ 13046089 (-)
XLOC_036256 dennd2da coding downstream 161017 12989372 ~ 13029297 (-)
XLOC_036255 slc2a6 coding downstream 322880 12854105 ~ 12867434 (-)
XLOC_036261 BX119975.1 coding upstream 27446 13238973 ~ 13239092 (-)
XLOC_036262 kcnn1b coding upstream 32844 13244371 ~ 13315567 (-)
XLOC_036263 NA coding upstream 91152 13302679 ~ 13306048 (-)
XLOC_036264 ccdc124 coding upstream 140171 13351698 ~ 13364879 (-)
XLOC_036265 pimr101 coding upstream 206459 13417986 ~ 13419049 (-)
XLOC_036253 NA non-coding downstream 480090 12686691 ~ 12710224 (-)
XLOC_036251 NA non-coding downstream 520902 12451451 ~ 12669412 (-)
XLOC_036252 CU639468.2 non-coding downstream 577426 12612772 ~ 12612888 (-)
XLOC_036247 NA non-coding downstream 1064940 12029473 ~ 12125374 (-)
XLOC_036229 FO834835.1 non-coding downstream 2750470 10439725 ~ 10439844 (-)
XLOC_036277 NA non-coding upstream 503415 13714942 ~ 13716577 (-)
XLOC_036279 CT025854.2 non-coding upstream 666201 13877728 ~ 13877845 (-)
XLOC_036286 BX248385.1 non-coding upstream 881267 14092794 ~ 14094516 (-)

Expression


Co-expression Network