Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110500311 |
| gene name | LOC106609056 |
| gene type | misc |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048585.1 |
| NCBI id | CM023239.2 |
| chromosome length | 64935962 |
| location | 37649502 ~ 37656769 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| PREDICTED: ras-related protein Rab-39B-like |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_021577614.2 | False | 3605 | mRNA | 0.45 | 5 | 37649502 | 37656152 |
| TU1986462 | True | 3901 | lncRNA | 0.44 | 3 | 37652380 | 37656769 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| si:dkey-172j4.3 | LOC106609052 | coding | upstream | 111678 | 37430796 ~ 37537824 (+) |
| zgc:109889 | LOC100194703 | coding | upstream | 338262 | 37248296 ~ 37314293 (+) |
| htr2cl1 | LOC106609050 | coding | upstream | 406629 | 37216205 ~ 37242879 (+) |
| LOC110500825 | LOC106609032 | coding | upstream | 892890 | 36666611 ~ 36756612 (+) |
| si:dkey-183c6.8 | LOC106609082 | coding | upstream | 1061462 | 36523371 ~ 36588040 (+) |
| LOC110500309 | LOC106604291 | coding | downstream | 45289 | 37701441 ~ 37703347 (+) |
| hdac8 | hdac8 | coding | downstream | 64966 | 37721118 ~ 37757590 (+) |
| cited1 | LOC106609035 | coding | downstream | 102607 | 37758759 ~ 37765562 (+) |
| rs4x | rs4x | coding | downstream | 110502 | 37766654 ~ 37772954 (+) |
| LOC118943013 | NA | coding | downstream | 111990 | 37768142 ~ 37768217 (+) |
| G1734550 | NA | non-coding | upstream | 29121 | 37619947 ~ 37620381 (+) |
| G1734548 | NA | non-coding | upstream | 34689 | 37614578 ~ 37614813 (+) |
| G1734478 | NA | non-coding | upstream | 96188 | 37552117 ~ 37553314 (+) |
| G1734477 | NA | non-coding | upstream | 99053 | 37545149 ~ 37550449 (+) |
| G1734461 | NA | non-coding | upstream | 188326 | 37460555 ~ 37461176 (+) |
| G1734553 | NA | non-coding | downstream | 793 | 37656945 ~ 37657310 (+) |
| G1734551 | NA | non-coding | downstream | 2069 | 37658221 ~ 37658728 (+) |
| G1734585 | NA | non-coding | downstream | 30414 | 37686566 ~ 37686803 (+) |
| G1734587 | NA | non-coding | downstream | 33715 | 37689867 ~ 37690069 (+) |
| G1734588 | NA | non-coding | downstream | 34761 | 37690913 ~ 37691131 (+) |
| G1734479 | NA | other | upstream | 80549 | 37565428 ~ 37568953 (+) |
| G1734420 | NA | other | upstream | 277835 | 37370957 ~ 37371667 (+) |
| G1733187 | NA | other | upstream | 890619 | 36756989 ~ 36760221 (+) |
| LOC110500325 | ppp2r5b | other | upstream | 1413237 | 36189389 ~ 36237829 (+) |
| G1734960 | NA | other | downstream | 386939 | 38043091 ~ 38045066 (+) |
| G1734961 | NA | other | downstream | 388956 | 38045108 ~ 38046506 (+) |
| LOC110500301 | LOC106609063 | other | downstream | 421399 | 38076983 ~ 38083972 (+) |
| arrb2b | LOC106608931 | other | downstream | 1211815 | 38867935 ~ 38939119 (+) |
