LOC110500309 (LOC106604291)


Basic Information

Item Value
gene id LOC110500309
gene name LOC106604291
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 37701441 ~ 37703347 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002470081.2
TGTTACGTTATCACGCAATGACATGGCAACGTCATTTAGGAACTTTTAGCAACTAATCAACCTGCCTCTAGAAATGTACCCTGAAAattagttggcaacactgaaTGAGACCAACGTTGAGGAAGGTGGTCTTGATCACGCTGTTGGGCCGGGACCAGCCCCGCTGAAAGCGCAGGTCTAGAGATGGTTAAAGTCCTGAAAGCAGGCaggggagttccaccgtctcatTCAAGAGCTTTGACTGTTTGGAGAGGAATTCCGAAGTTACTTTCGTCTGGACCGAAGCCAGTTCAATCACCTGCTCCAGATGGTTGGAGCCAGAATCGCCCGGATGGATACCAACTACCGTGAGTCCATCAGCCCAGTTGAACGCCTGGCGATTTGTCTCCGATTCTTGGCGACAGTGGACTCCTACAGGACCATAGGATTCAGCTTCCGAGTTGGATGGTCCACGGTGGCAGGCATTATCCCCTCTGTGCCACAAGCCATTTGGGACTGTCTGGTTGGTGAATACATGCCTGTCCCCAAGGAGGAAGACTGGAGGACCATCGCTGCCGAGATCCTGGAGAGGTGGAATTTCCAACTGTCTTGGCTCTATTGACAGGAAACATGTAGTGATGGCGGGACCCTCCGGGGCTCTGCCTTCAGCCAGGCACTTCAGGATGGCACCCTGGAGATTCCACCACCTGCATCACTCCCTGGGGCTGAAGACCCTGGACCTGTTCCTCATGTCTTCATCGGCGACGAGGCATTTCCTTTAAGACCCAACCTCATGAGGCCCTACGCTGGATGCCAGCTGCCATTGCCAAAGCCTGTAAGAGTCTTTAACAAACGACTGTCCAGGGCAAGGTTAGTTGTTGAATGCGCCTTTGGGATTCTGTCAGCCCGGTGGAGAATGCTTGGTCTCAGCCCCTCAAATGTTGATGCCTGCTTGAAGGCCACATGTGTTTTCAAAAACTACCTGCGGAGGTCATTCCAGGAGCCGCTCCGGATGGAGATGGGTACGCCAAATGGTCACCTACCTGATGTCACCAGGACAGGTGCCAACGACGCCTCCAGACAGGCACTCCAGGTGAGGGAGAAGCTGACCACCTACTTCTCATCGCCAGCAGGTGAAGTCCCATGGCAGTATGCCGTGGAGTGAAACAGATCTTTTTAAGTGCCCCATAAAAGGTTATTTTAAGAACCATCCACCATTGCCTATAAAATTGCATTTCTTCCCC

Function

NR:

description
uncharacterized protein LOC110535953

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002470081.2 True 1223 mRNA 0.52 2 37701441 37703347

Neighbor

gene id symbol gene type direction distance location
LOC110500311 LOC106609056 coding upstream 45289 37649502 ~ 37656769 (+)
si:dkey-172j4.3 LOC106609052 coding upstream 163617 37430796 ~ 37537824 (+)
zgc:109889 LOC100194703 coding upstream 390201 37248296 ~ 37314293 (+)
htr2cl1 LOC106609050 coding upstream 458568 37216205 ~ 37242879 (+)
LOC110500825 LOC106609032 coding upstream 944829 36666611 ~ 36756612 (+)
hdac8 hdac8 coding downstream 17771 37721118 ~ 37757590 (+)
cited1 LOC106609035 coding downstream 55412 37758759 ~ 37765562 (+)
rs4x rs4x coding downstream 63307 37766654 ~ 37772954 (+)
LOC118943013 NA coding downstream 64795 37768142 ~ 37768217 (+)
LOC118943014 NA coding downstream 66501 37769848 ~ 37769923 (+)
G1734745 NA non-coding upstream 1504 37699418 ~ 37699937 (+)
G1734743 NA non-coding upstream 4450 37696759 ~ 37696991 (+)
G1734588 NA non-coding upstream 10310 37690913 ~ 37691131 (+)
G1734587 NA non-coding upstream 11372 37689867 ~ 37690069 (+)
G1734585 NA non-coding upstream 14638 37686566 ~ 37686803 (+)
G1734762 NA non-coding downstream 13550 37716897 ~ 37717213 (+)
G1734802 NA non-coding downstream 86058 37789405 ~ 37789781 (+)
G1734864 NA non-coding downstream 185177 37888524 ~ 37888725 (+)
G1734877 NA non-coding downstream 201275 37904622 ~ 37905024 (+)
G1734479 NA other upstream 132488 37565428 ~ 37568953 (+)
G1734420 NA other upstream 329774 37370957 ~ 37371667 (+)
G1733187 NA other upstream 942558 36756989 ~ 36760221 (+)
LOC110500325 ppp2r5b other upstream 1465176 36189389 ~ 36237829 (+)
G1734960 NA other downstream 339744 38043091 ~ 38045066 (+)
G1734961 NA other downstream 341761 38045108 ~ 38046506 (+)
LOC110500301 LOC106609063 other downstream 374204 38076983 ~ 38083972 (+)
arrb2b LOC106608931 other downstream 1164620 38867935 ~ 38939119 (+)

Expression


Co-expression Network