hdac8 (hdac8)


Basic Information

Item Value
gene id hdac8
gene name hdac8
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 37721118 ~ 37757590 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036957748.1
TCCGGGTAGCACGGTTTCCGTTTTGTCCGGGGAATGTTGATAGTGGGACACCATCTGCATTTGTGCAGAAACTAGCTGTCTCATACACATGTTTACTTATTTCAAGCGTTTTATCCACAGAAGTACACTAACTAATATAAATGAGTTGTAAAGGAGACTCAAATGACTCTCCTTCCAAACGCAAAGTTGTGTATGTCTATAGTCCTCAATACACCGAGACATGCGACTCGCTATCAAAAGTCCCCAACCGGGCAAGTATGGTGCATTCACTCATAGAAGCTTATGGTTTACTTCAACACATGAGTGTTGTGAAGCCCCGTGTTGCGACCAGTGAGGAGATGGCCAAGTTCCACACAGACGCCTACCTGGAGCACCTCCACAAAATCAGCCAGGATGGAGACAATGATGACCCCCAGTCCGGGGACTTTGGCCTggGTTATGACTGCCCGGTGGTGGAGGGTATCTATGACTATGCTGCAGCGGTCGGTGGTGCCACCTTGACTGCTGCCCAGTGCCTGCTGGATAAGAGGGGTGAGGTGGCGATTAACTGGGCAGGAGGCTGGCACCACGCCAAGAAGGATGAGGCATCAGGCTTCTGTTATGTGAATGATGCTGTGCTGGGGATTCTCAAGCTGAGAGAGAAATATGAGAGAGTTCTTTATGTGGATGTGGACCTTCATCATGGAGATGGTGTGGAAGATGCCTTCAGTTTTACCTCCAAAGTGATGACTGTGTCTCTGCACAAGTTCTCCCCCGGATTCTTCCCAGGTACAGGGGACCTGTGTGACACAGGGATGGGCAAAGGAAGATGGTACGCTGTCAACGTCCCTCTGGATGACGGCATCAAAGACGACAGATATTTCCACGTCTTCACCAGTGTGATGCAGGAAGTGCAGGCGTTGTTTAACCCAGAAGCAGTAGTGATGCAGCTGGGAGCTGACACCATGGCTGGGGACCCCATGTGCTCCTTCAATATGACCCCTGTAGGGGTGGCCCAGTGTCTTGGCCACGTACTAGACTGGCACCTACCCACACTGCTGTTGGGAGGAGgTGGGTATAACCTAGCCAACACAGCCCGTTGTTGGACCTACCTGACTGGGGCCGTACTGAGACAAACACTGGCCTCTGAGATACCTGACCATGAGTTCTTCACAGAGTACGGTCCTGATTACTCTCTGGAGATCAGTCCCAGCTGTCGACCGGACCGCAATGAGACCAAACAGCTGGACAAGGTCATCTCCACCATCAAAGGGAATTTGAAGAATGTGGTTTAAGAGCGGAGTCTCATGTTTCCAATCAGGGCCTCCTGGGgtaatgaacacacacaccaggctgaTGAAGACCGTATGTTGGAGCTCCATCCTTTGCCaacggggaggagagggagatgttggagtgtgagggaggaggggggggggcaagagaagTGTGGAAAAACATGACTTGAATGTTTCCAGGGGGATGTTTTATTGTAGGGGACGAGGAGGAGGGTAGGGTGCTGATGTTGCCGGTTTGCTGTTTCCGTTTTGTCTTTGtatagttatttttttttaactgtggGGAGGAGATTCTGGTTCGACTAGCCATGGACCAGACTGAGAATATCTGCTCTAAAAATGGCTTCCAGGGCCCGTATACCCAAAGGGTCTGAGTatgaatgctgatctaggatcagaatTTGAAGATGattttagccttttagatcataatgaataagattgcaTGGCCCAGAATTCCTACCTTTGTTATATTTTGCTTCTGAATTTTAAGTTTAGAACCTGGGCTATTGGTGGGTTGTAATATTAGACTTAAATGTGTACATATTTAGGCGAGGGAAACATTTAGGATGGGCTATGTTAAGATTTGTGCTAAACGAGTAAAGCAGACATGTCGGGGGCTCGTGTTACCTCTTTAGCTGCTTCCCTGGTGCTGTATGTTCATGCCTCCCTGGGGTGAGTTTCCCAAAAACAAAGATAATCTTACACCCCATATAGAGTATCCTGACAAGAACTTTGATGTTTTATGATCTTAGTGCTACAGATGATCTTCACTACATGAGTGCAGTACTTTTCGAGAGCTTTATATGGGCATTTTTcttaactgaacaaaaataagcgcaactatttcaaagattttactgagatacagttcatataaggaaatcagtcaatttaaataaattggaccctaatctatggatttcacatgactgagcaggggcgcagccatgggagGGCATTGGCCCACCCTtcttgggagccaggccctgccaatcagaatgagtttttccccacaaaagggctttattacagacagaaataatcctcaatttcatcagctgtctggttgGCTGGTGTCAGACGCTGAAGAAGTCTTATGTGGAGGTCCTGGCATGGTTACAAGGTCCacggttgtgaggcaggttggcTCTACTGCCAAATCCTCTAAATTGACGGTagtcggcttatggtagagaaatgaacatccaattctctgacaacagctctggtggacattcctgcagccagcatgccaattgcatgctccctcaacttgagacatctgtggcattgttgcgtgacaaaactgcacattttggtggccttttattttccccagcacaaggtgaacctgtgtaatgatcatgcggtttaattagcttcttggtatgccacacctgtcaggtggatggaatatTTTGGCTAAGTagaaatgctcagtaacagggatgtaaaacaaatttgtacacaaaatctgagagaaaagctttttgtgcgtatggatcatttctgggaccttttatatcagctcatgaaacatgggaccaacacatgtttatttttgttcagtatatattgtaCAGACTGTGTTTTTAAGTGGCATGTCAATGATCTGATCTCTTGTCTAATGAAATCTTTTACGCAAAAGCATCGGGCAAATTTGATTTCAGTCCTGTTCAAACCGCATGTTTTACTTTCAACTGTAAGTACATTAGGAGTGTAGAACAGTTTTTTATAATTTTGCTTTTGGTTTCACAAAAGTACAACTTTTTTTTATGGTTCACCTTTGCCTTCTATATGGtgtaaataacattttttttttaaatacaaactGA

Function

symbol description
hdac8 Predicted to enable histone deacetylase activity. Acts upstream of or within central nervous system development and neuron cellular homeostasis. Predicted to be located in cytoplasm; nucleus; and plasma membrane. Predicted to be part of histone deacetylase complex. Is expressed in several structures, including brain; eye; fin bud; muscle; and oocyte. Human ortholog(s) of this gene implicated in Cornelia de Lange syndrome 5 and Wilson-Turner syndrome. Orthologous to human HDAC8 (histone deacetylase 8).

NR:

description
histone deacetylase 8

GO: NA

KEGG:

id description
K11405 HDAC8; histone deacetylase 8

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036957748.1 True 3115 mRNA 0.46 11 37721118 37757590

Neighbor

gene id symbol gene type direction distance location
LOC110500309 LOC106604291 coding upstream 17771 37701441 ~ 37703347 (+)
LOC110500311 LOC106609056 coding upstream 64966 37649502 ~ 37656769 (+)
si:dkey-172j4.3 LOC106609052 coding upstream 183294 37430796 ~ 37537824 (+)
zgc:109889 LOC100194703 coding upstream 409878 37248296 ~ 37314293 (+)
htr2cl1 LOC106609050 coding upstream 478245 37216205 ~ 37242879 (+)
cited1 LOC106609035 coding downstream 1169 37758759 ~ 37765562 (+)
rs4x rs4x coding downstream 9064 37766654 ~ 37772954 (+)
LOC118943013 NA coding downstream 10552 37768142 ~ 37768217 (+)
LOC118943014 NA coding downstream 12258 37769848 ~ 37769923 (+)
LOC118943010 NA coding downstream 13723 37771313 ~ 37771447 (+)
G1734762 NA non-coding upstream 3905 37716897 ~ 37717213 (+)
G1734745 NA non-coding upstream 21181 37699418 ~ 37699937 (+)
G1734743 NA non-coding upstream 24127 37696759 ~ 37696991 (+)
G1734588 NA non-coding upstream 29987 37690913 ~ 37691131 (+)
G1734587 NA non-coding upstream 31049 37689867 ~ 37690069 (+)
G1734802 NA non-coding downstream 31815 37789405 ~ 37789781 (+)
G1734864 NA non-coding downstream 130934 37888524 ~ 37888725 (+)
G1734877 NA non-coding downstream 147032 37904622 ~ 37905024 (+)
G1734878 NA non-coding downstream 148987 37906577 ~ 37906780 (+)
G1734479 NA other upstream 152165 37565428 ~ 37568953 (+)
G1734420 NA other upstream 349451 37370957 ~ 37371667 (+)
G1733187 NA other upstream 962235 36756989 ~ 36760221 (+)
LOC110500325 ppp2r5b other upstream 1484853 36189389 ~ 36237829 (+)
G1734960 NA other downstream 285501 38043091 ~ 38045066 (+)
G1734961 NA other downstream 287518 38045108 ~ 38046506 (+)
LOC110500301 LOC106609063 other downstream 319961 38076983 ~ 38083972 (+)
arrb2b LOC106608931 other downstream 1110377 38867935 ~ 38939119 (+)

Expression


Co-expression Network