cited1 (LOC106609035)


Basic Information

Item Value
gene id cited1
gene name LOC106609035
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 37758759 ~ 37765562 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021577611.2
AtaattttagctaaccctaacactTTTCCTAACCTACTACCTTAATTATCCTAACCAGCTGCTTCAGTTTTGCTGACTTAGGAAAAGGGAGGCAAGAGAGGGCAAGAGTAAAGAGGACGCAGGAGTTGCGCAAATCCAATTGAGAAAAAGCATGGCTTCCATACATTAACCATACACATCCTATCTGCCTGACGGCTTCACTAAAGAAACTCAGAGCCTTGTGTATAGATAAGAACGTTTACTCTCCTCCCCAGCCTGAAATCAAACTCCCAACTCTATTCATGCTGTTGAATAGCACACCTGCCTGCCATGTCCTGTATGACGACTAGACTGACTGCATCAGGCCTTCCCAACGACATTTTATGCAAAACATCATGTTTCCCTCCATAGGATGTCATCATTTGATTTGAATACGACATCAGTTGACCTTTTTAGATTATGAATTGTTTTGTCATAAGATAAGTGTTTGCTTTAGGGCTCAGTCTATAATATAACTAggcttgcaaaaaaaaaatgtatcaaaggAGAGTTGTTGGACATTACAAGCTGACGTTAATTTGCGTTTATGTGGGTCGGTCTGTTTTTACCCGTTTTTTTCTAGTTTTACATTCAAGAGGGAAATTGAAAACCGTTCGTCTCATTTGCATAACGTTTTCTCACCGGGGAGAAAGAGGACTCCCCGTACTTCCATACATCATGCTCGAGCCTCATCTACATGAGAACTGTCCCCGCGCACTGACGGGACTTGACCACAATAAAGACAGATGCTCGCAAGCCTTTATGTGGTTAACTGAAAAGGAATTAAGGCGCGTGGTGTTTTAAAAGAAGGTGCCTTGGCatgttttattttctctctctgacaATATTGAGACGAATTGTTAAAAATCAATGTATGAATGAACagaggatctgaaaaaaatgcTGTGTTATCAATGGATCTGGGTTGATAGGACAACCTCGAATTTTGGGAAATGTTTAGGTCTGTCATTTTATTTCACGATGACATGAGTTATTTGACCTATAGTTGTAACAGAGGACTTTAAAATATTAAATAGGCCTACCTAATTGATGACAGCATCCACGGTGTCTGTCTAAGTAGGCTAGTGCGAGTGTGTTGGCCCACACTGTTTTTCATTTTGGTGTCACATTTTATGTTGTGCAAATCATCAGTTATTGTTTCAAGTGCATTAAGGGGTGTTGGGGCTATGCGTTCCCTCATGAATGATAATCAGTGAGATGGCTGttgagaatagaatagaacactaTTTGATCTGTGATTGTAGAGAAAGGCGCTCGCTCTTGAGAATAAAGAACATCTGCCTCAGTTGAGCGCTTTCATGACGGGCACACGGAAACTATGGAAACTGGATCACTAAGGTACTGGAATTAACCGAACCGTTTGTTGGGCGATAGCCCTTGTGCGTCTGTCCGATTCTCTTCATACTCTTGGCCGGGATTTTGATGCTGTCCAGCCACAAACGCACTTCGCCCGCCGCTTCTTGAGGGTCgagtgtgtgtgcgagtgagtgagcgagcgaaTGAATAATCCTTTAGATTCAGTAACAACACCATTGAGGGAACTCTGCCCGAGTCGTCCAGTCTAGAGAGAAATTGAGAGTGAAGGCGAGACGCTGCACGGGGACAATGTCCTGATCCACAACCGTTTACTTTATGGCTACAGTTTAACAGGACCAAACGGATGACTTGCTAAATATAGACAACTATTAACAAACGTTTTAGTTGATGACAACATTTACTTACTGGTGTGGTTTTGCGAGTTGATTTGGGTTCATTAGACATCTCACCAATCCTCTCCACACACGGACCTTCTCTGCTGTGCTGAACGTTTTTTCTAAAAGGCATCCCCAGGTGATGACCTCACTACTGTTCTCCAGCCCCACCCACGTTGTCATGAAGGACCGCGAGCTGCCGTcatcctccctcaccctcctccacTACACCGGGACGGCAGTGCCTGTCAAGACACCCGGGGGTGGCCCcttaccctcctcctccaccaccctccacacctccacctctccatccctctccaaaCCTCAGCCATTCTGCCTGCAGACCCTCCAGACCGGCCCTCACCTCCTCGCCAGCATGCAGCTCCAGAAACTCAACTCCCACTACCAGAGTCTGGCTGGAGGTATAAGTGGGGGCGTAGCCTCTGGGCCCACGTCAGGACCTCAGAGGGGGTTTGGGGCCTCAACGCTGGGCTCGGCGGGGCAGCTGGTGGGGGTTACCCCTGGAGGTGTTGGAGGGAGGAATCAGGGCTGTGGGGGGATTATTGACTCTGACCCGGTGGACGAGGAGGTTCTGATGTCGTTGGTCGTAGAGCTGGGGTTGGACCAGGCTAACGAGCTGCCTGAACTCTGGCTAGGACAGAACGAGTTTGACTTCATAGCGGATGTACCTGCCGGATGCTGACCCACCCaaatggagggatgaaaggaggggATCTGTGCTCTCTCATTCTTTCCTTTTCATTACTCTCTAGGTTGGATTGACATAAACTCTAATGTCCCGGCTGGGTGCTCACCCAAACACACGAAATtagacattttttggggggggtcacCCTCTGTTTTTCTCTAAAGGACAAGTTATGGACACAACCTGACGCAAAAAGATCATGCTGTTCTCTTGTTTTTCCTGTGTCCCATTCTAAATTTAAAGGAGAAAGGATAGACACAGGGTCTAATGTTTTTGTGTGTCTCACTGAAAATACTATGTTACTGAGGGAACCTGAGCCTCGGGCCTGTCTGTCAATTTCACTCTACTTCCCAAGggccccctacacacacaccggcagaaggagggatggatggtatTACGATCCGGTAATGGAAGTAGCAGCCGTGAAACAGGCACTTGTCACTTATTCAGTTACCCCAACATTCAGGAGAGTTCAGCAGGTTTGATGGAacaccagggtgtgtgtgtgtgtgtgtgtgtgggggggggattgTTCAGGTCCCTGTGACATAAGACAGACATGACAGGAGGCATCAGAAGCCTGTGTAGTCTCGGTGGACCGGTGTAACCTGACCTGTATGGTGCTGTCAGTGTCTGTATCTAAATAAATGAATGAGTCTTAACGTCCGTGGTCTTCGTGTACCTGGTAACTCTGTAGGTGAAATGAATCATAGTTCCACCCCCCTGCCCCATCATTCTTTCTGTCTATtataagtccccccccccccccccctccatctctgtccccTGTGGTCCTAGAGCCAAGATGCTCCATTACTACCTACTCTGCTGTTGTACCGTCAATGTgtatgtccaaaatggcacccaattccttatatagcgcactacttttgaccagggcccatgcactacttttgaccagagccctgtgtgtcctgttcaaaagtagtgctgtttttatatgtatatatgagagaatagggtgccatataggACATGTACAATAGTTCCTGAGGGTTACAGGTAATGAGGCGGTTAAAGAAGGGTGACTTTaaaaaatgttgtattttttttgGAGAGGGGTTGACTTGTGAGAGCTGAAGGCTAATTAATTATAAACTAATGATTGCGTAaattaattatttttttgaaCAGTACCTGTTCAGAAGACTACAGAAACAAGATTACCTCTTAATAAAGAGGAAAAGTTCCAATTGACTAAGTTCCCATGTTCCAATTGTGAGTCACTTGGCATCATCATGCTTCTTTCACCATGTGATACGATGGTGTTTTTACCTTTTCGAGTTAGTCAGTCAGTAGGCCGGCAGTAGACTAAAGCAGGAGTAGGCTACATATCTAAACAGGGTccttattgttttgtagttttagTTGCTGGATCACTTGATCGTAAGAGAgcacgagtgtgtgtgtgactgcttgCATGGGAAAGTATTCCTGTAAGTTTCCCTTTAAGTTTTGACTCCAAGGAAATGCAAGATAACTACACCAACTTATTTCCTAATCAGAAACCCTTTGAGCTTCCAGACTAGCAAGAACATTTACTTTtcattaaatgtttgttttacttTCCTTATGACATATCTGATATTTTTGTGGtcattttctttttgttttagcTTGAGAAACACTTCTTGCTATTGATTTTGTAAAGGAAAAAAAatgttggagaaaaaaaaaagaatcacTTGTCTAGCTACTGCACTGATTGTATGGTCCTAAGTTTCTCTCTTTAAATCACACCTTTTTTTTAATTGAGGCCTTATTTTAGAAAGGGGGAGGGACCTAtttcttttttctcttttttgtttttgaaatgacaGGTGGAATCATAACTGATGTTGATTTTTGTTTTAGCACTTTCTCCGTTTGCATCTCATTTGTATCTTTATGAAAATATGTACTAGATCATATTTAAATGCTTGTATTTTTGTTACTTCTCTGCATTTGGGGGAAAATAAAGAATACAAACCTGAA
>TU1986710
GGAACTCTGCCCGAGTCGTCCAGTCTAGAGAGAAATTGAGAGTGAAGGCGAGACGCTGCACGGGGACAATGTCCTGATCCACAACCGTTTACTTTATGGCTACAGTTTAACAGGACCAAACGGATGACTTGCTAAATATAGACAACTATTAACAAACGTTTTAGTTGATGACAACATTTACTTACTGGTGTGGTTTTGCGAGTTGATTTGGGTTCATTAGACATCTCACCAATCCTCTCCACACACGGACCTTCTCTGCTGTGCTGAACGTTTTTTCTAAAAGGCATCCCCAGGTGATGACCTCACTACTGTTCTCCAGCCCCACCCACGTTGTCATGAAGGACCGCGAGCTGCCGTcatcctccctcaccctcctccacTACACCGGGACGGCAGTGCCTGTCAAGACACCCGGGGGTGGCCCcttaccctcctcctccaccaccctccacacctccacctctccatccctctccaaaCCTCAGCCATTCTGCCTGCAGACCCTCCAGACCGGCCCTCACCTCCTCGCCAGCATGCAGCTCCAGAAACTCAACTCCCAC
>TU1986706
GGGATTATTGACTCTGACCCGGTGGACGAGGAGGTTCTGATGTCGTTGGTCGTAGAGCTGGGGTTGGACCAGGCTAACGAGCTGCCTGAACTCTGGCTAGGACAGAACGAGTTTGACTTCATAGCGGATGTACCTGCCGGATGCTGACCCACCCaaatggagggatgaaaggaggggATCTGTGCTCTCTCATTCTTTCCTTTTCATTACTCTCTAGGTTGGATTGACATAAACTCTAATGTCCCGGCTGGGTGCTCACCCAAACACACGAAATtagacattttttggggggggtcacCCTCTGTTTTTCTCTAAAGGACAAGTTATGGACACAACCTGACGCAAAAAGATCATGCTGTTCTCTTGTTTTTCCTGTGTCCCATTCTAAATTTAAAGGAGAAAGGATAGACACAGGGTCTAATGTTTTTGTGTGTCTCACTGAAAATACTATGTTACTGAGGGAACCTGAGCCTCGGGCCTGTCTGTCAATTTCACTCTACTTCCCAAGggccccctacacacacaccggcagaaggagggatggatggtatTACGATCCGGTAATGGAAGTAGCAGCCGTGAAACAGGCACTTGTCACTTATTCAGTTACCCCAACATTCAGGAGAGTTCAGCAGGTTTGATGGAacaccagggtgtgtgtgtgtgtgtgtgtgtgggggggggattgTTCAGGTCCCTGTGACATAAGACAGACATGACAGGAGGCATCAGAAGCCTGTGTAGTCTCGGTGGACCGGTGTAACCTGACCTGTATGGTGCTGTCAGTGTCTGTATCTAAATAAATGAATGAGTCTTAACGTCCGTGGTCTTCGTGTACCTGGTAACTCTGTAGGTGAAATGAATCATAGTTCCACCCCCCTGCCCCATCATTCTTTCTGTCTATtataagtccccccccccccccccctccatctctgtccccTGTGGTCCTAGAGCCAAGATGCTCCATTACTACCTACTCTGCTGTTGTACCGTCAATGTgtatgtccaaaatggcacccaattccttatatagcgcactacttttgaccagggcccatgcactacttttgaccagagccctgtgtgtcctgttcaaaagtagtgctgtttttatatgtatatatgagagaatagggtgccatataggACATGTACAATAGTTCCTGAGGGTTACAGGTAATGAGGCGGTTAAAGAAGGGTGACTTTaaaaaatgttgtattttttttgGAGAGGGGTTGACTTGTGAGAGCTGAAGGCTAATTAATTATAAACTAATGATTGCGTAaattaattatttttttgaaCAGTACCTCTTAATAAAGAGGAAAAGTTCCAATTGACTAAGTTCCCATGTTCCAATTGTGAGTCACTTGGCATCATCATGCTTCTTTCACCATGTGATACGATGGTGTTTTTACCTTTTCGAGTTAGTCAGTCAGTAGGCCGGCAGTAGACTAAAGCAGGAGTAGGCTACATATCTAAACAGGGTccttattgttttgtagttttagTTGCTGGATCACTTGATCGTAAGAGAgcacgagtgtgtgtgtgactgcttgCATGGGAAAGTATTCCTGTAAGTTTCCCTTTAAGTTTTGACTCCAAGGAAATGCAAGATAACTACACCAACTTATTTCCTAATCAGAAACCCTTTGAGCTTCCAGACTAGCAAGAACATTTACTTTtcattaaatgtttgttttacttTCCTTATGACATATCTGATATTTTTGTGGtcattttctttttgttttagcTTGAGAAACACTTCTTGCTATTGATTTTGTAAAGGAAAAAAAatgttggagaaaaaaaaaagaatcacTTGTCTAGCTACTGCACTGATTGTATGGTCCTAAGTTTCTCTCTTTAAATCACACCTTTTTTTTAATTGAGGCCTTATTTTAGAAAGGGGGAGGGACCTAtttcttttttctcttttttgtttttgaaatgacaGGTGGAATCATAACTGATGTTGATTTTTGTTTTAGCACTTTCTCCGTTTGCATCTCATTTGTATCTTTATGAAAATATGTACTAGATCATATTTAAATGCTTGTATTTTTGTTACTTCTCTGCATTTG

Function

NR:

description
PREDICTED: cbp/p300-interacting transactivator 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021577611.2 False 4440 mRNA 0.44 2 37758759 37765562
TU1986710 False 560 TUCP 0.53 2 37760335 37763258
TU1986706 True 2094 lncRNA 0.42 2 37763412 37765535

Neighbor

gene id symbol gene type direction distance location
hdac8 hdac8 coding upstream 1169 37721118 ~ 37757590 (+)
LOC110500309 LOC106604291 coding upstream 55412 37701441 ~ 37703347 (+)
LOC110500311 LOC106609056 coding upstream 102607 37649502 ~ 37656769 (+)
si:dkey-172j4.3 LOC106609052 coding upstream 220935 37430796 ~ 37537824 (+)
zgc:109889 LOC100194703 coding upstream 447519 37248296 ~ 37314293 (+)
rs4x rs4x coding downstream 1092 37766654 ~ 37772954 (+)
LOC118943013 NA coding downstream 2580 37768142 ~ 37768217 (+)
LOC118943014 NA coding downstream 4286 37769848 ~ 37769923 (+)
LOC118943010 NA coding downstream 5751 37771313 ~ 37771447 (+)
nhsl2 nhsl2 coding downstream 35496 37801058 ~ 37953220 (+)
G1734762 NA non-coding upstream 41546 37716897 ~ 37717213 (+)
G1734745 NA non-coding upstream 58822 37699418 ~ 37699937 (+)
G1734743 NA non-coding upstream 61768 37696759 ~ 37696991 (+)
G1734588 NA non-coding upstream 67628 37690913 ~ 37691131 (+)
G1734587 NA non-coding upstream 68690 37689867 ~ 37690069 (+)
G1734802 NA non-coding downstream 23843 37789405 ~ 37789781 (+)
G1734864 NA non-coding downstream 122962 37888524 ~ 37888725 (+)
G1734877 NA non-coding downstream 139060 37904622 ~ 37905024 (+)
G1734878 NA non-coding downstream 141015 37906577 ~ 37906780 (+)
G1734921 NA non-coding downstream 211538 37977100 ~ 37977958 (+)
G1734479 NA other upstream 189806 37565428 ~ 37568953 (+)
G1734420 NA other upstream 387092 37370957 ~ 37371667 (+)
G1733187 NA other upstream 999876 36756989 ~ 36760221 (+)
LOC110500325 ppp2r5b other upstream 1522494 36189389 ~ 36237829 (+)
G1734960 NA other downstream 277529 38043091 ~ 38045066 (+)
G1734961 NA other downstream 279546 38045108 ~ 38046506 (+)
LOC110500301 LOC106609063 other downstream 311989 38076983 ~ 38083972 (+)
arrb2b LOC106608931 other downstream 1102405 38867935 ~ 38939119 (+)
nat16 LOC106608942 other downstream 1413725 39179147 ~ 39211035 (+)
cited1 LOC106609035 other upstream 154 37758759 ~ 37765562 (+)

Expression


Co-expression Network