rs4x (rs4x)


Basic Information

Item Value
gene id rs4x
gene name rs4x
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 37766654 ~ 37772954 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>NM_001165051.1
GAAAGTGGGAGGTCCTTTTCCCCGCAGACTCCAACATGGCACGAGGACCGAAGAAGCACCTGAAGCGCGTTGCAGCGCCCAAGCATTGGATGCTTGACAAGCTCACCGGAGTGTTCGCACCTCGTCCCTCCACCGGTCCCCACAAGCTGAGGGAGTGCCTGCCCCTCATCATCTTCCTCAGGAACCGTCTGAAGTACGCCCTGACTGGAGACGAGGTCAAAAAGATTTGCATGCAGAGGTTCATCAAGATCGATGGCAAGGTCCGCACTGACATCACCTACCCCACTGGCTTCATGGATGTGATCAGCATTGAGAAAACTGGAGAGCATTTCCGTCTGATCTATGACGTGAAGGGACGTTTCACTGTTCACCGCATCACCGCTGAGGAGGCCCAGtACAAACTGTGCAAGGTGAAGAAGAACCTCATCGGCACTAAAGGAGTCCCCCACCTGGTGACCCACGACGCACGCACCATCCGCTACCCCGACCCCCTCATCAAGGTCAACGACACAGTCCGCATCGACCTCGCCACCGGCAAGATCACAGAACACATCAAGTTCGACACAGGTAACCTGTGCATGGTGACCGGTGGTGCCAATTTGGGGCGTATTGGTATCATCACCAACAGGGAGAGGCATCCCGGCTCGTTTGACGTTGTACACGTCAAGGATAGCGCTGGAAACATCTTCGCCACCAGGCTTGGAAACATCTTCATCATTGGCAAGGGCAACAAGCCGTGGGTGTCCCTGCCCCGTGGAAAGGGTATTCGTCTCACAATCgctgaggagagagacaagagaatcGCTGCCAAGGCCGGCAGCAGCTAAGTCCTATATGTAGTTCTAGGCATCCTTGCTTTGAAATAAAAACAATGTTATTTACAACAAAATCC

Function

NR:

description
unnamed protein product

GO:

id name namespace
GO:0006412 translation biological_process
GO:0005840 ribosome cellular_component
GO:0003723 RNA binding molecular_function
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
K02987 RP-S4e, RPS4; small subunit ribosomal protein S4e

RNA

RNA id representative length rna type GC content exon number start site end site
NM_001165051.1 True 892 mRNA 0.54 7 37766654 37772954

Neighbor

gene id symbol gene type direction distance location
cited1 LOC106609035 coding upstream 1092 37758759 ~ 37765562 (+)
hdac8 hdac8 coding upstream 9064 37721118 ~ 37757590 (+)
LOC110500309 LOC106604291 coding upstream 63307 37701441 ~ 37703347 (+)
LOC110500311 LOC106609056 coding upstream 110502 37649502 ~ 37656769 (+)
si:dkey-172j4.3 LOC106609052 coding upstream 228830 37430796 ~ 37537824 (+)
nhsl2 nhsl2 coding downstream 28104 37801058 ~ 37953220 (+)
arhgap36 LOC106609060 coding downstream 185063 37958017 ~ 38050782 (+)
LOC110500301 LOC106609063 coding downstream 304029 38076983 ~ 38083972 (+)
LOC110500338 LOC106609064 coding downstream 360105 38133059 ~ 38166964 (+)
col4a6 LOC106608923 coding downstream 522476 38295430 ~ 38482345 (+)
G1734762 NA non-coding upstream 49441 37716897 ~ 37717213 (+)
G1734745 NA non-coding upstream 66717 37699418 ~ 37699937 (+)
G1734743 NA non-coding upstream 69663 37696759 ~ 37696991 (+)
G1734588 NA non-coding upstream 75523 37690913 ~ 37691131 (+)
G1734802 NA non-coding downstream 16451 37789405 ~ 37789781 (+)
G1734864 NA non-coding downstream 115570 37888524 ~ 37888725 (+)
G1734877 NA non-coding downstream 131668 37904622 ~ 37905024 (+)
G1734878 NA non-coding downstream 133623 37906577 ~ 37906780 (+)
G1734921 NA non-coding downstream 204146 37977100 ~ 37977958 (+)
G1734479 NA other upstream 197701 37565428 ~ 37568953 (+)
G1734420 NA other upstream 394987 37370957 ~ 37371667 (+)
zgc:109889 LOC100194703 other upstream 514479 37248296 ~ 37314293 (+)
G1733187 NA other upstream 1007771 36756989 ~ 36760221 (+)
G1734960 NA other downstream 270137 38043091 ~ 38045066 (+)
G1734961 NA other downstream 272154 38045108 ~ 38046506 (+)
arrb2b LOC106608931 other downstream 1095013 38867935 ~ 38939119 (+)
nat16 LOC106608942 other downstream 1406333 39179147 ~ 39211035 (+)

Expression


Co-expression Network