XLOC_036262 (kcnn1b)


Basic Information

Item Value
gene id XLOC_036262
gene name kcnn1b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 13244371 ~ 13315567 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00070886
TTTGTCGGCAGGCTAGTCGACAGGCCTCGTTTAATAGCACTCAAGCTAATGAGGCCTCAGTTAAATTCATAGGCGCAGAAGCTGGACTCTCGCTGATTGATTCATTCCAACATAAATGTAGAGTTACGCCGTCGTCAGCACATGGACATAATATTGTTCATTCTGATGGAACATGAATCTGAGGCCAAAAGAAGACCTTGTTCTGGAACCCTGGCAtcatttttgaattattttagaTTTGATGTTTATTTAAGGGGCGTTTGGATATCACGATAAAGTGGAAGTCACCAGTAACTTCCTGGGAGCCATGTGGCTGATCTCCATAACCTTCCTGTCGATCGGGTATGGAGACATGGTGCCTAACACATACTGTGGGAAGGGAGTGTGTCTCCTCACAGGAATCATGgGGGCCGGGTGCACTGCCCTCGTGGTGGCTGTCGTAGCCAGAAAACTAGAGCTCACCAAGGCTGAAAAGCATGTCCATAACTTTATGATGGACACTCAACTCTGCAAAAGAGTGAAAAACACGGCTGCTAATGTACTCAGGGAAACATGGCTAATCTACAAACACACAAAACTTGTGAAGAAGATTGACCATGCCAAGGTCCGCAAGCATCAGCGCAAGTTCCTGCAGGCCATTCACCAACTTCGAAGTGTGAAGATGGAGCAAAGGAAACTGAATGACCAAGCAAACACGCTGGTGGACTTAGCAAAGACACAGAATGTGATGTACGACCTGGTATCAGAACTGCAGGAGCGCAGCGAGGAGCTGGAAAAGCGAATCGGTCACCTCGAAACAAAACTGGACTCCATAAACAGCAGTCTGCAGGCTCTGCCTGGCCTGCTCTCACAAGCCATACAGCAGCAACAGCACCACCTGCTGGACGGGCTGACCCAGCGCGGATTCACCCTCACGAGACCCTCCTCGCAGACCTCCGAACGCTCCTGGGCGTCCTCCGTGCACCGACGGAGATCACCCTCTACCGCACCACACACGTCCTCCGATAGCGGCTAGCACGCTCTCACACTCTTGAAACCATACTCGAAACctacacacacactcccacacaccTCTGTCATCAACTAACACTGCTAAATATACTTTTAGTACTAAAACGTTAAACCAAGAATGATTCCTTTCAACACACTACACTGGAATAAAATGTAACGAATTAACACA
>TCONS_00070887
ATGAACAGCTGCAAGTACAATGGGGGCATAGTCAGACCACTCGGCAGTCTGGGGGCGTCCCGGAGGAACCTCGCAGAGCTGGACTCTGAGACTCAGCCTTTGCAGACCCTGCACACGTCCGGCCTGGAGGTGGTGGTCTCCAAAGGAAACGGGGAAGACCCTAGTAAGCAGTCTAGTGAGAACCTGGTGACGCAGAGACCGTGCAGCGCGCCACATAAGAAGAACAAGGACATTGGCTATAAACTCGGCCACCGGAGGGCGCTGTTCGAGAAGCGCAAGCGCCTTAGTGACTACGCCCTGATTTTTGGGATGTTTGGGATTGTTGTCATGGTGACGGAGACTGAACTCTCCTGGGGAGTTTATACAAAGGAATCCTCATATTCATTTGCACTGAAATGCCTTATTAGCCTCTCCACTGTAATTCTACTCTGTCTGATCATTATGTACCACGCAAGAGAGATCCAGCTCTTTATGGTGGACAATGGCGCAGACGACTGGCGGATTGCCATGACGTACGAGCGGATCCTCTTCATAGTCCTGGAGCTGCTGGTGTGCGCCATCCACCCCATCCCAGGCCAGTATGTGTTCACATGGACGGCCCGCCTGGCCTTCACCTACACGCCGTCGGTGGCAGACGCAGACGTGGACATCATCCTGTCTATCCCCATGTTCCTGCGCCTCTACCTGATCGGCCGTGTAATGCTCCTGCACAGTAAACTCTTTACAGACGCCTCGTCGCGCAGCATCGGAGCCCTCAATAAGATCAACTTCAACACGCGCTTCGTCATGAAGACCCTCATGACCATCTGCCCAGGCACCGTCCTGCTGGTCTTCAGCATCTCGTCATGGATCATCGCCGCCTGGACTGTGCATGTCTGCGAGAGATATCACGATAAAGTGGAAGTCACCAGTAACTTCCTGGGAGCCATGTGGCTGATCTCCATAACCTTCCTGTCGATCGGGTATGGAGACATGGTGCCTAACACATACTGTGGGAAGGGAGTGTGTCTCCTCACAGGAATCATGgGGGCCGGGTGCACTGCCCTCGTGGTGGCTGTCGTAGCCAGAAAACTAGAGCTCACCAAGGCTGAAAAGCATGTCCATAACTTTATGATGGACACTCAACTCTGCAAAAGAGTGAAAAACACGGCTGCTAATGTACTCAGGGAAACATGGCTAATCTACAAACACACAAAACTTGTGAAGAAGATTGACCATGCCAAGGTCCGCAAGCATCAGCGCAAGTTCCTGCAGGCCATTCACCAACTTCGAAGTGTGAAGATGGAGCAAAGGAAACTGAATGACCAAGCAAACACGCTGGTGGACTTAGCAAAGACACAGAATGTGATGTACGACCTGGTATCAGAACTGCAGGAGCGCAGCGAGGAGCTGGAAAAGCGAATCGGTCACCTCGAAACAAAACTGGACTCCATAAACAGCAGTCTGCAGGCTCTGCCTGGCCTGCTCTCACAAGCCATACAGCAGCAACAGCACCACCTGCTGGACGGGCTGACCCAGCGCGGATTCACCCTCACGAGACCCTCCTCGCAGACCTCCGAACGCTCCTGGGCGTCCTCCGTGCACCGACGGAGATCACCCTCTACCGCACCACACACGTCCTCCGATAGCGGCTAGCACGCTCTCACACTCTTGAAACCATACTCGAAACctacacacacactcccacacaccTCTGTCATCAACTAACACTGCTAAATATACTTTTAGTACTAAAACGTTAAACCAAGAATGATTCCTTTCAACACACTACACTGGAATAAAATGTAACGAATTAACACA
>TCONS_00070888
GTTCGAGAAGCGCAAGCGCCTTAGTGACTACGCCCTGATTTTTGGGATGTTTGGGATTGTTGTCATGGTGACGGAGACTGAACTCTCCTGGGGAGTTTATACAAAGGAATCCTCATATTCATTTGCACTGAAATGCCTTATTAGCCTCTCCACTGTAATTCTACTCTGTCTGATCATTATGTACCACGCAAGAGAGATCCAGCTCTTTATGGTGGACAATGGCGCAGACGACTGGCGGATTGCCATGACGTACGAGCGGATCCTCTTCATAGTCCTGGAGCTGCTGGTGTGCGCCATCCACCCCATCCCAGGCCAGTATGTGTTCACATGGACGGCCCGCCTGGCCTTCACCTACACGCCGTCGGTGGCAGACGCAGACGTGGACATCATCCTGTCTATCCCCATGTTCCTGCGCCTCTACCTGATCGGCCGTGTAATGCTCCTGCACAGTAAACTCTTTACAGACGCCTCGTCGCGCAGCATCGGAGCCCTCAATAAGATCAACTTCAACACGCGCTTCGTCATGAAGACCCTCATGACCATCTGCCCAGGCACCGTCCTGCTGGTCTTCAGCATCTCGTCATGGATCATCGCCGCCTGGACTGTGCATGTCTGCGAGAGATATCACGATAAAGTGGAAGTCACCAGTAACTTCCTGGGAGCCATGTGGCTGATCTCCATAACCTTCCTGTCGATCGGGTATGGAGACATGGTGCCTAACACATACTGTGGGAAGGGAGTGTGTCTCCTCACAGGAATCATGgGGGCCGGGTGCACTGCCCTCGTGGTGGCTGTCGTAGCCAGAAAACTAGAGCTCACCAAGGCTGAAAAGCATGTCCATAACTTTATGATGGACACTCAACTCTGCAAAAGAGTGAAAAACACGGCTGCTAATGTACTCAGGGAAACATGGCTAATCTACAAACACACAAAACTTGTGAAGAAGATTGACCATGCCAAGGTCCGCAAGCATCAGCGCAAGTTCCTGCAGGCCATTCACCAACACAGAATGTGATGTACGACCTGGTATCAGAACTGCAGGAGCGCAGCGAGGAGCTGGAAAAGCGAATCGGTCACCTCGAAACAAAACTGGACTCCATAAACAGCAGTCTGCAGGCTCTGCCTGGCCTGCTCTCACAAGCCATACAGCAGCAACAGCACCACCTGCTGGACGGGCTGACCCAGCGCGGATTCACCCTCACGAGACCCTCCTCGCAGACCTCCGAACGCTCCTGGGCGTCCTCCGTGCACCGACGGAGATCACCCTCTACCGCACCACACACGTCCTCCGATAGCGGCTAGCACGCTCTCACACTCTTGAAACCATACTCGAAACctacacacacactcccacacaccTCTGTCATCAACTAACACTGCTAAATATACTTTTAGTACTAAAACGTTAAA
>TCONS_00070889
ATGAACAGCTGCAAGTACAATGGGGGCATAGTCAGACCACTCGGCAGTCTGGGGGCGTCCCGGAGGAACCTCGCAGAGCTGGACTCTGAGACTCAGCCTTTGCAGACCCTGCACACGTCCGGCCTGGAGGTGGTGGTCTCCAAAGGAAACGGGGAAGACCCTAGTAAGCAGTCTAGTGAGAACCTGGTGACGCAGAGACCGTGCAGCGCGCCACATAAGAAGAACAAGGACATTGGCTATAAACTCGGCCACCGGAGGGCGCTGTTCGAGAAGCGCAAGCGCCTTAGTGACTACGCCCTGATTTTTGGGATGTTTGGGATTGTTGTCATGGTGACGGAGACTGAACTCTCCTGGGGAGTTTATACAAAGGAATCCTCATATTCATTTGCACTGAAATGCCTTATTAGCCTCTCCACTGTAATTCTACTCTGTCTGATCATTATGTACCACGCAAGAGAGATCCAGCTCTTTATGGTGGACAATGGCGCAGACGACTGGCGGATTGCCATGACGTACGAGCGGATCCTCTTCATAGTCCTGGAGCTGCTGGTGTGCGCCATCCACCCCATCCCAGGCCAGTATGTGTTCACATGGACGGCCCGCCTGGCCTTCACCTACACGCCGTCGGTGGCAGACGCAGACGTGGACATCATCCTGTCTATCCCCATGTTCCTGCGCCTCTACCTGATCGGCCGTGTAATGCTCCTGCACAGTAAACTCTTTACAGACGCCTCGTCGCGCAGCATCGGAGCCCTCAATAAGATCAACTTCAACACGCGCTTCGTCATGAAGACCCTCATGACCATCTGCCCAGGCACCGTCCTGCTGGTCTTCAGCATCTCGTCATGGATCATCGCCGCCTGGACTGTGCATGTCTGCGAGAGATATCACGATAAAGTGGAAGTCACCAGTAACTTCCTGGGAGCCATGTGGCTGATCTCCATAACCTTCCTGTCGATCGGGTATGGAGACATGGTGCCTAACACATACTGTGGGAAGGGAGTGTGTCTCCTCACAGGAATCATGgGGGCCGGGTGCACTGCCCTCGTGGTGGCTGTCGTAGCCAGAAAACTAGAGCTCACCAAGGCTGAAAAGCATGTCCATAACTTTATGATGGACACTCAACTCTGCAAAAGAGTGAAAAACACGGCTGCTAATGTACTCAGGGAAACATGGCTAATCTACAAACACACAAAACTTGTGAAGAAGATTGACCATGCCAAGGTCCGCAAGCATCAGCGCAAGTTCCTGCAGGCCATTCACCAAGCTCAGAAACTTCGAAGTGTGAAGATGGAGCAAAGGAAACTGAATGACCAAGCAAACACGCTGGTGGACTTAGCAAAGACACAGAATGTGATGTACGACCTGGTATCAGAACTGCAGGAGCGCAGCGAGGAGCTGGAAAAGCGAATCGGTCACCTCGAAACAAAACTGGACTCCATAAACAGCAGTCTGCAGGCTCTGCCTGGCCTGCTCTCACAAGCCATACAGCAGCAACAGCACCACCTGCTGGACGGGCTGACCCAGCGCGGATTCACCCTCACGAGACCCTCCTCGCAGACCTCCGAACGCTCCTGGGCGTCCTCCGTGCACCGACGGAGATCACCCTCTACCGCACCACACACGTCCTCCGATAGCGGCTAG

Function

symbol description
kcnn1b Predicted to enable calmodulin binding activity and small conductance calcium-activated potassium channel activity. Predicted to be involved in potassium ion transmembrane transport. Predicted to act upstream of or within potassium ion transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in neuron projection; neuronal cell body; and plasma membrane. Is expressed in head; heart; and nervous system. Orthologous to several human genes including KCNN2 (potassium calcium-activated channel subfamily N member 2).

GO:

id name namespace
GO:0071805 potassium ion transmembrane transport biological_process
GO:0006811 ion transport biological_process
GO:0006813 potassium ion transport biological_process
GO:0043005 neuron projection cellular_component
GO:0043025 neuronal cell body cellular_component
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005516 calmodulin binding molecular_function
GO:0015269 calcium-activated potassium channel activity molecular_function
GO:0016286 small conductance calcium-activated potassium channel activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060503-397 Predicted to enable calmodulin binding activity and small conductance calcium-activated potassium channel activity. Predicted to be involved in potassium ion transmembrane transport. Predicted to act upstream of or within potassium ion transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in neuron projection; neuronal cell body; and plasma membrane. Is expressed in head; heart; and nervous system. Orthologous to several human genes including KCNN2 (potassium calcium-activated channel subfamily N member 2).

Ensembl:

ensembl_id ENSDARG00000023546

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00070886 False 1180 mRNA 0.48 6 13244371 13269300
TCONS_00070887 False 1800 mRNA 0.53 8 13244371 13315567
TCONS_00070888 False 1410 mRNA 0.53 7 13244428 13315304
TCONS_00070889 True 1644 mRNA 0.54 9 13244536 13315567

Neighbor

gene id symbol gene type direction distance location
XLOC_036261 BX119975.1 coding downstream 5279 13238973 ~ 13239092 (-)
XLOC_036260 si:ch73-61d6.3 coding downstream 32844 13190314 ~ 13211527 (-)
XLOC_036259 zgc:194990 coding downstream 59382 13161680 ~ 13184989 (-)
XLOC_036258 si:dkey-208b23.5 coding downstream 180041 13052291 ~ 13064330 (-)
XLOC_036257 si:dkey-208b23.5 coding downstream 198282 13036221 ~ 13046089 (-)
XLOC_036264 ccdc124 coding upstream 36131 13351698 ~ 13364879 (-)
XLOC_036265 pimr101 coding upstream 102419 13417986 ~ 13419049 (-)
XLOC_036266 CR354547.3 coding upstream 112111 13427678 ~ 13428740 (-)
XLOC_036267 pimr106 coding upstream 126241 13441808 ~ 13442871 (-)
XLOC_036268 CR354547.2 coding upstream 137652 13453219 ~ 13454281 (-)
XLOC_036253 NA non-coding downstream 534147 12686691 ~ 12710224 (-)
XLOC_036251 NA non-coding downstream 574959 12451451 ~ 12669412 (-)
XLOC_036252 CU639468.2 non-coding downstream 631483 12612772 ~ 12612888 (-)
XLOC_036247 NA non-coding downstream 1118997 12029473 ~ 12125374 (-)
XLOC_036277 NA non-coding upstream 399375 13714942 ~ 13716577 (-)
XLOC_036279 CT025854.2 non-coding upstream 562161 13877728 ~ 13877845 (-)
XLOC_036286 BX248385.1 non-coding upstream 777227 14092794 ~ 14094516 (-)
XLOC_036294 BX294388.2 non-coding upstream 1098786 14414353 ~ 14452438 (-)
XLOC_036296 NA non-coding upstream 1159202 14474769 ~ 14482457 (-)

Expression


Co-expression Network