hmgb3a (LOC106608930)


Basic Information

Item Value
gene id hmgb3a
gene name LOC106608930
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 38857116 ~ 38864530 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021577670.2
TCAGGCCGTTCTCGTATTGAGCTAGCGCGAGGCTGTGTAGTCTACATGGGGATAGAGAAGATAGGGGAAAGGCGAGACTGTAGGATTCCAGAATCCAGACTGACTGATCGTTAACAATACAGaTACTGACCCAATCAACCACCTGACCAATTAACCAATAAACGAGTTACACAACGCCGCTAGGCCCCGCCCAGTGACCAGGATGGCTAAAGGCACCCCTGGGAAGCCCAAAGGCAAGATGTCTGCCTACGCCTACTTCGTTCAGACCTGCCGGGAGGAGCACAAGAAGAAGAGTCCCGAGATACCTGTCAACTTTGCTGAGTTTTCCAAGAAGTGCTCCGGACGATGGAAGACTATGTCTGGCAAAGAGAAGGGGAAGTTTGAGGACATGGCGAAGCAGGATAAGGTGCGCTATGACAACGAGATGATGCACTTTGCCCCTGGCGGCAAGAAGGGAAGGAAGAAGGACCCCAATGCACCAAAGAGGCCCCCATCTGGTTTCTTCATCTTCTGCGCAGACCACCGGCCCAAGATCAAGGCCCAGCATCCCAGCCTGGGGATAGGGGACGTGGCCAAGAAACTAGGCGAGCAGTGGAACAACCTTACTGATGCTACGAAACAGCCCTACCTGATCAAGGCCAACAAACTCAAAGACAAGTATCAGAAGgacGTGGCTGACTATAAGTCCGGTAAGGGGAAGGTGGGTGCTCCGAGCATGGTGATGGCCCCTAAACCCATGACGAAGAGTAATAtggatgacgatgatgatgatgacgacgaggaagacgaggaggaggatgaggaggaggaggaggatgacgaGTAGACCGACCGCgttctgttttgtgtgttgtgttattatgatgaagatgatgacgaCGATGGTCATGATTATTAAGTGATGCAGGGTTTTTTTTTCAGTTTGAAATGCGATTTGTAGGGTTAGAGGAAGAAACACTGGTGATATCTTTATGTTGCTTAATTACGTTGCTCCGCCCCTGCCACacttccctcctctccactctttgTTGTTTTGACTTTGTCACTATGTTGATTTTGTGTAAACCGCTTATGCAAAGTTCTCTATGTAACACTGAGTCCGCTTAAGAAGTTGAGACTGTACGTTACCTCGGCAACTGTGATTGAACTCAAAGCAGATCCCTAATAATCCCCCCAACGGCTGTGTGTTTGCAcacatgcacgtgtgtgtgtgttactgtgtccATTTCACCAGCACTGTCCAGTGTCTTCCTCAAAACCCTCATAGCATTGTCACTATACTGGGTGTACATCGATTCAACGGAGAAGCATTTAAAACCAGTAGTAGCATTGCGGCAAAACATTCTGTTTTTGgctgtgcgtcccaaatggcaccctaatccctatacagtgcactacttttgacctgggctcATAGGGaatcccatagagctctggtcaaaagtagtgcactatatagggaatagggtgtcatttgggaggcagacatcgtttttttttttttaagaatgtgcaAGGTGGTGTGTTACTGTATATGGTTGATTTAGACTTAGTCCTTGTTTTTCCCGTTTAACAAAAGAAATGGAGGCCTCCGGATGTAAGGTGATATCAGATTGCACATATCTAGTAGTGGTGTTGTTGGTGTAGCTAGGTGGCTGTGTATGTAgctgtgtgttggttgttgcACCAGGAAGTGTTGTAATCGTGAAAGTCGAACTCACTGTTCAACAGCCTCCCATGTTAACAAACAGTCATGGCTGGTTAGCTAGTGCACGCTGGCTAACAGTAATTTCACACTACAACTCACTCATTGCCTGGGGTAATTCCTAACTTCCATTTAAGTCAAATTTTCACTTAGTCATGCAACAGAGGAGGGTGGATACCACCCAACCAATGGTATATAATGGAAACTATTATCTCCCTTTTGGCTAAGTGCACTTTTACTATTAACCGTTCGTTCATTGTTACAAGATCTTCTCATGGTTTAAAACACGACACATTGAGTGAAAAAGCACGGCTGTTGACTATTATAATAAACCTGTACTTATCTGTATCTAAgaggattttttttcttttttgtatGTTTTAGAAGAGCTACGTTTGCTATTATTATTAAAGTATGACATTTTTACA
>XM_021577671.2
TCTTCGCCTGTATAGCAGCTAGTACTACCCAATACAAGGCGCTATGAACTGGGACTGAAAGCAACCGAACGGAGCGGCGAATTAAAACCAGAAAAAGTCATACATTTTTGGGCAAAaTACTGACCCAATCAACCACCTGACCAATTAACCAATAAACGAGTTACACAACGCCGCTAGGCCCCGCCCAGTGACCAGGATGGCTAAAGGCACCCCTGGGAAGCCCAAAGGCAAGATGTCTGCCTACGCCTACTTCGTTCAGACCTGCCGGGAGGAGCACAAGAAGAAGAGTCCCGAGATACCTGTCAACTTTGCTGAGTTTTCCAAGAAGTGCTCCGGACGATGGAAGACTATGTCTGGCAAAGAGAAGGGGAAGTTTGAGGACATGGCGAAGCAGGATAAGGTGCGCTATGACAACGAGATGATGCACTTTGCCCCTGGCGGCAAGAAGGGAAGGAAGAAGGACCCCAATGCACCAAAGAGGCCCCCATCTGGTTTCTTCATCTTCTGCGCAGACCACCGGCCCAAGATCAAGGCCCAGCATCCCAGCCTGGGGATAGGGGACGTGGCCAAGAAACTAGGCGAGCAGTGGAACAACCTTACTGATGCTACGAAACAGCCCTACCTGATCAAGGCCAACAAACTCAAAGACAAGTATCAGAAGgacGTGGCTGACTATAAGTCCGGTAAGGGGAAGGTGGGTGCTCCGAGCATGGTGATGGCCCCTAAACCCATGACGAAGAGTAATAtggatgacgatgatgatgatgacgacgaggaagacgaggaggaggatgaggaggaggaggaggatgacgaGTAGACCGACCGCgttctgttttgtgtgttgtgttattatgatgaagatgatgacgaCGATGGTCATGATTATTAAGTGATGCAGGGTTTTTTTTTCAGTTTGAAATGCGATTTGTAGGGTTAGAGGAAGAAACACTGGTGATATCTTTATGTTGCTTAATTACGTTGCTCCGCCCCTGCCACacttccctcctctccactctttgTTGTTTTGACTTTGTCACTATGTTGATTTTGTGTAAACCGCTTATGCAAAGTTCTCTATGTAACACTGAGTCCGCTTAAGAAGTTGAGACTGTACGTTACCTCGGCAACTGTGATTGAACTCAAAGCAGATCCCTAATAATCCCCCCAACGGCTGTGTGTTTGCAcacatgcacgtgtgtgtgtgttactgtgtccATTTCACCAGCACTGTCCAGTGTCTTCCTCAAAACCCTCATAGCATTGTCACTATACTGGGTGTACATCGATTCAACGGAGAAGCATTTAAAACCAGTAGTAGCATTGCGGCAAAACATTCTGTTTTTGgctgtgcgtcccaaatggcaccctaatccctatacagtgcactacttttgacctgggctcATAGGGaatcccatagagctctggtcaaaagtagtgcactatatagggaatagggtgtcatttgggaggcagacatcgtttttttttttttaagaatgtgcaAGGTGGTGTGTTACTGTATATGGTTGATTTAGACTTAGTCCTTGTTTTTCCCGTTTAACAAAAGAAATGGAGGCCTCCGGATGTAAGGTGATATCAGATTGCACATATCTAGTAGTGGTGTTGTTGGTGTAGCTAGGTGGCTGTGTATGTAgctgtgtgttggttgttgcACCAGGAAGTGTTGTAATCGTGAAAGTCGAACTCACTGTTCAACAGCCTCCCATGTTAACAAACAGTCATGGCTGGTTAGCTAGTGCACGCTGGCTAACAGTAATTTCACACTACAACTCACTCATTGCCTGGGGTAATTCCTAACTTCCATTTAAGTCAAATTTTCACTTAGTCATGCAACAGAGGAGGGTGGATACCACCCAACCAATGGTATATAATGGAAACTATTATCTCCCTTTTGGCTAAGTGCACTTTTACTATTAACCGTTCGTTCATTGTTACAAGATCTTCTCATGGTTTAAAACACGACACATTGAGTGAAAAAGCACGGCTGTTGACTATTATAATAAACCTGTACTTATCTGTATCTAAgaggattttttttcttttttgtatGTTTTAGAAGAGCTACGTTTGCTATTATTATTAAAGTATGACATTTTTACA

Function

NR:

description
PREDICTED: high mobility group protein B3-like

GO: NA

KEGG:

id description
K11296 HMGB3; high mobility group protein B3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021577670.2 False 2133 mRNA 0.45 5 38857116 38864530
XM_021577671.2 True 2127 mRNA 0.45 5 38858485 38864530

Neighbor

gene id symbol gene type direction distance location
LOC110500344 LOC106608928 coding upstream 117408 38726432 ~ 38739708 (+)
LOC110500343 mtm1 coding upstream 136314 38662084 ~ 38720802 (+)
LOC110515117 LOC106608926 coding upstream 202710 38542379 ~ 38654406 (+)
LOC118942926 NA coding upstream 342532 38506104 ~ 38514584 (+)
ankrd46b ankrd46 coding upstream 360451 38483403 ~ 38496665 (+)
arrb2b LOC106608931 coding downstream 3405 38867935 ~ 38939119 (+)
LOC110500354 LOC106608903 coding downstream 91609 38956139 ~ 38982550 (+)
alox12 LOC106608934 coding downstream 104853 38969383 ~ 38986233 (+)
zgc:92664 LOC106608937 coding downstream 139208 39003738 ~ 39022864 (+)
LOC118942927 NA coding downstream 274012 39138542 ~ 39154522 (+)
G1735820 NA non-coding upstream 187193 38669409 ~ 38669923 (+)
G1735778 NA non-coding upstream 228707 38592329 ~ 38628409 (+)
G1735795 NA non-coding upstream 228964 38627784 ~ 38628152 (+)
G1735784 NA non-coding upstream 247991 38607190 ~ 38609125 (+)
G1735773 NA non-coding upstream 273318 38583506 ~ 38583798 (+)
G1735932 pelp1 non-coding downstream 78648 38943178 ~ 38955401 (+)
G1735986 NA non-coding downstream 169979 39034509 ~ 39178178 (+)
G1736042 NA non-coding downstream 239425 39103955 ~ 39105859 (+)
G1736065 NA non-coding downstream 279180 39143710 ~ 39144316 (+)
LOC110500301 LOC106609063 other upstream 774842 38076983 ~ 38083972 (+)
G1734961 NA other upstream 810610 38045108 ~ 38046506 (+)
G1734960 NA other upstream 812050 38043091 ~ 38045066 (+)
cited1 LOC106609035 other upstream 1093858 37758759 ~ 37765562 (+)
G1734479 NA other upstream 1288163 37565428 ~ 37568953 (+)
nat16 LOC106608942 other downstream 314757 39179147 ~ 39211035 (+)
G1736098 NA other downstream 369134 39233664 ~ 39289670 (+)
G1736484 LOC106608963 other downstream 1011226 39875756 ~ 39876950 (+)
G1737353 NA other downstream 1198176 40062706 ~ 40063325 (+)

Expression


Co-expression Network