XLOC_036263


Basic Information

Item Value
gene id XLOC_036263
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 13302679 ~ 13306048 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00072406
CCTGCACAACTGGAGTGGCTGCACTCTcaggaccgcatttttaggaccGCATCTTTAAGACCCTAGTTTTTTGTGACAGCGTCACCTGTCGGATTGGATCATGGATGCGCTAATGGACGACACGGATGACAAGGAAAGTGTAAGTACCGATTTttctattaagttttattttaaactgttaaagtatgtgtttattttgtaatgctgCTGTTTTATACAGTGAGTTTATGCAGAAATGCCAGATTAGCCTGCATGATTTATCCCACTTTTAAGGGTCTGGGACAAAAATGTTACGTGACGatattttttccagaagaagaataaaatattataataataaatatggatAATTTTACACAGCCAGAGTGAGAGCTGTTATAACTGTTAATAATTttctagagttcgttttctagTTTGATTAAATGCTACGACGTTCGTAGCTCGTGACCATGGTTTAATGAAACATTGTTGATTTAATGGCTTGTTGACTTAACGGCTAATGTGCTTAGTGACATGTATTAAACTAAGATGGTAAAAGCACGTTTGATGTAAGAGTTTTAGATTTATCTATATTTTACTGAATTCGTGTTATTCGTTGTATTACATTAGCACATTAAAAATTGTGCTGACTGCCTGTTTGCCCCACAATACTGTATGTGTTATTAGCCTGATGTTTTGTCATCGTTTTACAGTGATGAATGAGATTCTGAAAGTTAGGATTATTCTGCAGGTCTTAACCATATAAAGTCTCATATCTTTAATTTATATCAGGTCTGTTTTACCTGGCGAATAAGAAGTTATGGCCAATATGATTGGATTGCTTAGGCTCATTGTAggaggaaaagaaaacaaactacagGATGATTTTCATTGAGGTTTTCTCAAACTGttgagtaacactttataacatctgcatactataaataaataattattaagcatttaataactagttaatttattaatattttatttgtttagcattaactctacattaaataGACAttgataagcagtttataaatacagttacaaATGCTAGCTGTGTTCTTGAGTTTATAGCATATCTATGAAGAAGTGCAGCTTATCTGTGGTGTTCATTTTCCAGAGGAATGTCTGGCCAAataagtttataaactgcatgctGGGTGCTACTCATTTATGAATCCATGTAAAATGATTTGCTGTTCTGTGGTGGTATTTTAgttcatatttaaatgatttttttttcataggcCATCGTACATCCTCTGGGTGTCTTGAGGAGCTGGTCTTTGGATAATGCTGAGCAGGTCTTTCTTTCTGGTAACGGTTATCATTACAGGTCAGAATATGGTTAATTTTGGCACAATGCTCAAAGAGCCTTTTTGTTACTGGTATATATGTTTACTCAACAGTGATTGTTCTCTATTTCAGTGAAGTAAAAGAATTTAACAGACAGATTTACAAACAACTGACGAAAGAAGGGAGACCATTCAATAGGTGGGTATTGCTcttataaacttaaaaatatggAGTTGGGAGTAAAGTTTCCTGTTTGGTTCTCCCAACAGTGCATACGCTTAAgccagaaataaatatatatattatagcttacactgtaaagcaaatgtttgttattatacctcttatattaaatattaatctgaATTTAATTTCATAACAATTGATTATGAACCTTTTGAGTTCatatacattgttttacatattcaagaatatatatattcattcattttctttttcggcttagtccctttatttatcaggggttgccacagcagaaggaaccgccaacttatccagcatatgttttacacagcggatgcccttccagctgcaacccagtactgggaaacacccatttacactcatacacttgaacatggggagaacatgcaaactccacacagaaatgaccactggcccagccggggcttgaaccagcaaccttcttgctgtgaagcgacggtgctaaccactgtgctgccctatgtGCTCTATGCGGGTGAGTGGGATTGACAAACCACTTGGAGGGAACACTCTTGCTGTCTTAACcagacattttgttataaataatcatgtgcgtttcatgtttattcatataactgctattttatctcttagcacttcatttttgtcttgatatttaatatctcttgtttaaatacactatgaacagcagctgcactaattattttccttgttccctatttccacctggggatattcatccagaggcctctagagatcgtaacctgtgaagagatgatgccaccatagaggacttctaaaTGTATCCATAATCCTGAAACAGACCGTAtcatgagcagatgctgtggtggtcatggagaagtggagagcatgagactgattaatgaaagaccccagtgacagatgagtgCCCACATTGACCCTGTGGTCCAGCCTGAAAACCAGCTGGTGACCTACTCGCACCTGCAGCTTCTCTACGATGGACGCCCAGTGTttgcctccagcgcctagactgcagctctgcatgtGAAGTGtggccagaagagaaatggttgttcccaactgagcctagtttctctcaaggtttattCCTTCCctttcatcaattggtaaagttttgttcctccactgttgccattggcttgcttggtttaggacttgtggaactgtgcatcgatggatttgcttttttttagtgtttggattttcagcagtgaatactaaaccacactgaactgaactgaatttaataaatgttaagctgctttgacacaatctacattgtaaaagtgctttagaaataaagatgaaattaattaaaattgaattgaatattcaaCACGtttccatttttctcagaaaacatatttataaaggtgctgttgacttgaaattttcaccagatgttgataacaatttgtaaagtaattagatttgttttctattcatatattttttttttctttggttttcaggtcaatagcacctttagaaatatgttttctgagaataaTGGGAacttgttgaatacttatttaccccagtgtgtatgtgtatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatgtgtgtgtgtgtgtgtgtatttatatgtatgtatatatgtatgtatatgtgtgtgtgtgtgtgtgtgtatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatacttgaactTTCttcttcactctcattcacaggaGCTAAAGTCTACAGCCAGTCTGAATGCAGCAACTGAATAAACAGTGGGGTCAATTTTGtggttgaattgcattaataaaaaa

Function

GO:

id name namespace
GO:0000027 ribosomal large subunit assembly biological_process
GO:0071826 ribonucleoprotein complex subunit organization biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0022618 ribonucleoprotein complex assembly biological_process
GO:0043603 cellular amide metabolic process biological_process
GO:0043604 amide biosynthetic process biological_process
GO:1901566 organonitrogen compound biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:0006412 translation biological_process
GO:0042254 ribosome biogenesis biological_process
GO:0042255 ribosome assembly biological_process
GO:0042273 ribosomal large subunit biogenesis biological_process
GO:0006518 peptide metabolic process biological_process
GO:0044391 ribosomal subunit cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0022625 cytosolic large ribosomal subunit cellular_component
GO:0022626 cytosolic ribosome cellular_component
GO:0022627 cytosolic small ribosomal subunit cellular_component
GO:0044445 obsolete cytosolic part cellular_component
GO:0005829 cytosol cellular_component
GO:0005840 ribosome cellular_component
GO:0005854 nascent polypeptide-associated complex cellular_component
GO:0015934 large ribosomal subunit cellular_component
GO:0015935 small ribosomal subunit cellular_component
GO:0043228 non-membrane-bounded organelle cellular_component
GO:0043232 intracellular non-membrane-bounded organelle cellular_component
GO:0005198 structural molecule activity molecular_function
GO:0003723 RNA binding molecular_function
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
ko00230 Purine metabolism
ko00240 Pyrimidine metabolism
ko03020 RNA polymerase
ko03230 Viral genome structure
ko05164 Influenza A
ko05169 Epstein-Barr virus infection
ko05016 Huntington disease
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00072406 True 3370 lncRNA 0.35 1 13302679 13306048

Neighbor

gene id symbol gene type direction distance location
XLOC_036261 BX119975.1 coding downstream 63587 13238973 ~ 13239092 (-)
XLOC_036260 si:ch73-61d6.3 coding downstream 91152 13190314 ~ 13211527 (-)
XLOC_036259 zgc:194990 coding downstream 117690 13161680 ~ 13184989 (-)
XLOC_036258 si:dkey-208b23.5 coding downstream 238349 13052291 ~ 13064330 (-)
XLOC_036257 si:dkey-208b23.5 coding downstream 256590 13036221 ~ 13046089 (-)
XLOC_036264 ccdc124 coding upstream 45650 13351698 ~ 13364879 (-)
XLOC_036265 pimr101 coding upstream 111938 13417986 ~ 13419049 (-)
XLOC_036266 CR354547.3 coding upstream 121630 13427678 ~ 13428740 (-)
XLOC_036267 pimr106 coding upstream 135760 13441808 ~ 13442871 (-)
XLOC_036268 CR354547.2 coding upstream 147171 13453219 ~ 13454281 (-)
XLOC_036253 NA non-coding downstream 592455 12686691 ~ 12710224 (-)
XLOC_036251 NA non-coding downstream 633267 12451451 ~ 12669412 (-)
XLOC_036252 CU639468.2 non-coding downstream 689791 12612772 ~ 12612888 (-)
XLOC_036247 NA non-coding downstream 1177305 12029473 ~ 12125374 (-)
XLOC_036277 NA non-coding upstream 408894 13714942 ~ 13716577 (-)
XLOC_036279 CT025854.2 non-coding upstream 571680 13877728 ~ 13877845 (-)
XLOC_036286 BX248385.1 non-coding upstream 786746 14092794 ~ 14094516 (-)
XLOC_036294 BX294388.2 non-coding upstream 1108305 14414353 ~ 14452438 (-)
XLOC_036296 NA non-coding upstream 1168721 14474769 ~ 14482457 (-)

Expression


Co-expression Network