LOC110500354 (LOC106608903)


Basic Information

Item Value
gene id LOC110500354
gene name LOC106608903
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 38956139 ~ 38982550 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036957782.1
gagcccttatgagcccctcctttagagtagaatcctcaaaacaggttctaaatactgttgacatctagtggatgtcctcccctcagccgtcctcccctcagcagcctccactgacacacactggcGAACTACACACACTCCAAACCTCCTTTATTTGTATTCGTATGTTCATAATCTCTCTCCTTTTGACCCATAGTGCAGTGCGTGTGTCCTTGTACCGTACCATAGAACTCTAGGTAAGAGTGGGAGGAGCCTCAGCCAGTGTCTTGCAGGGAAGCGACACCCACTCCGAGCGCCTACTGGCCCACCTGCTGGGTGACAACACACCCTTGGCGGACTCTGTTAGGcccacCAGCTCTCCTCAGCTCCGTGATCTGGTTTCCAAAAAGCCCTGCACTAAAAGCCGGAAGCCTGGATTGGCTGTGAGCGACAGGGGCGGCGCCTCTTTCCAGAGGAAAGGAGTCTCGCTGGCCAATCAGGACACCTGCCTGTCTGCACTCAGAGCATTGAGACAAGTCATACTGACCAGTGGATCTCTACTGAAGGAAAATATACACTAgCGTGTCCACGATGTCGTcctccccctgtgtgtgtgtctgcagcaacAGCATGGTGCTAATTGGAGTGACAGCGGGGCTGGGGGGGGTGAGTGGCCAGTATGGCAGTGCACCCACCCCCACCCCGTAGGGAGCTGTACCGTCTGCAACTGGCTCTGGTCTTAGTGCCCCCACCCCTCAACTTTACTGTGCCCATGCTCAGCCACGGGAGGAGGGATAGGAGTCTGAAGGTATCCTCCTTCTGTACAGAGGCCCTGACCATATGCAACTCCCTCCTCCATCCGCACACCCCCTCACCCTCAAACCCCCCCAGGCATCCAACCTCCTAGGGGGGCCCACCCCAGGACCTCCCTTCCCCAGCTCCCTGGACAACCACCTACCTCTGGTTCTTCCAGGGCTCTCCGGCGGCCAGAGACCCGTTTTCATCCTCTACGACAAAGAAGAGGCATCGGATGTGGAGATTTCGCTAGACAGCGATTCGGACGATGGCGTGTTAATCGTGCCACAGAGGATGCTGATGTTGGAAAGCCAAGATGGCACCAGCGCTGCGGCCACTCTTCCCGGGTCTTCCTTAGCACCAGGTGGCGTCACACTCCCCATGCCCTGTCCAAGGGGCGACCCGGGTGGGGacatctccctccccctttccaacgaccttccctctacctccctccctcacctcccctcctccaccccaaaCTACACCGTCAACTTGTTCCCTCCAGCTCCGCTAGTCTCTCTGGTTCCCCCTCTCAACTCCACCGGTGTGGCCCAACTCGGGGAACCCTCTGTGGGGTTAGGAGTCGGGACTGACTCCCTGCCTGGAGCCCAGCTCCAGCAGATGTTGCTCCAGGGCCAGCCTCCAGCACCAGGTCAACCTACAGCACTGGATCTCCCCATACAGGTTCACCAGAACCAGTTAGCCCAGTCCAGCAGAGCCCTACAGCAGCAACATTAATCCGTTGACGAAGATCACACTGTCATTCATATCAACCGCTCTGATGAAGAAGAGGATGAGCtggaagaggaagagagcgaTTTCCCAGATGAGGATATTTGATGATGAAGACCTTGATGATTATGAGGCggaagaggggggagatggaggatgaagaagagggagagattcGGCTGTTGGacggagaagggaggagaggcgGGATGGGAGGACGAGAGGAAGGAGAGGTGCTCAGAGGgtaggtggaggagggagggataggaggatTCCGAgtggagagcgagggggagggagggataggaggatTCCGAGTGGAGAGCAAGGGGGAAGGAGGGATAAAGGCTCAGGAGGTAGAGCGCATCAGAGtgctggaggaagagagagagggagacgaggATGCCAATGAAGGAATGAATGATCCGACCATGCCTCAGATTCTGTGTGTGACGGGCGGAGCTCTGAGAGAGAGCTAGCTCAGGCAGAGCTAGATGAGGAAGGGGCCGGGCATGGGCAGAAAGTGAGGTCATGGGAGCAGAAGGGAGGCAATCGGCTGGAGGGAACGTCCTCTTCTGAAGACGGTCCTGCTGCTCAACACCAACAGGAGGCGGAGCCTGCACCGGAAGTGAGGGTGGACGGTGACGATCAGCCATCCAATCAGGAGGGAGAAATATCCAAACAGGGCGGCGACAATACCGGACAGGATATGAGGTCATCAACAGCTCCGagggagagcaagggagaggggCCTGaacgagagaaagaaggagaggatgggagagggatgaagagagagagaaaggaggaaggaacaggacaggaacagagaAGAAAAATGTAAGAAAAAGACTCTCAAACACACTGTTCGAAATGTGTCCATATAACCATTACACCACTCAGGCTTTTTATACTGTACAACCCACACATTTCCCATGTGTTACATGGACATGGCTTAGGGGGAATACTTTGCAGATATACAAATGATGTTGGTTAATGACCGTTGTGCATTTCCTCTGCCACAGAATTGGCCAACAAGAGTTATCTAACAACCCACACTCTCTCTCAGTTGGATGAAGAAGCGATGGCGTCCATGCTAGCCGACATCGTAGCCTGCCCTCcagacaatgtagaaaatgtgcCCTCTGCCCATCCTAAACAAGGCCAGGCACGGCTCCATCACAATACCTTCAGAACAACTCGATTTTTAGCCCCTAGTCTCACACATTCTTTCATTATCAACATACTGCTAAGACAATGTTCAACACATTGAGGCTGGGTTTAGAATTGGCaccccaattctgatattttttccactaatttgtctgttttatttttattttattttttacacccctttttcttcccaatttcatggtatccaattggtcttgtctcatcgctgcaactcccgtacggactcgggagaggtgaagttCGAGAgctgtgtgtcctccgaaacacgactcAACGACtcaactgcttcttgacacaatgcccacttaacctggaaagccagccgtaccaatgtgtcggaggaaacactgtacacctggtgaccgtgtcagcgtggaGTCTCTAGTGCTCAATGGGAtgaggacatccctgccggccaaaccctcccctaacctggacgacgctgggccaactgtgcgccatcccatgggtctcccggtcgcggtcggctgcgacagagcctggactcgaacccagaatctctagtggcacagcttagcactgcgatgcagagccttagaccactgtgccactcgggaggcctctcactaattggtcttttgaccaatcacatcagatctttttcagagctgatctaatTGTTCAAAAGACGGATTTAGTGAAATAAATATCAgaactgggctgcctgtgtaaacacagccagccATAGAGGTTGGAATTAGATCGGTCTTAAACGATCACGTTTCGTCTTGAATGCAGGACAGTAGATGCATTTGTTATACAACTCTCTGGgctattattatttaaaaaacgcTTCAATTATTTTACATCAAAACATAAAGACTTTGCAGCTCGTACTGGTGTGTGCTGTGTTACTGAGTGGAGTAGTCACGTGTTTTTGGATctttatagacagtatatgactTCTGTTCTTTTTGTTCTCACGTCTTTTCTTACAAAATAAACGTCAAATGCAAACCTGTTGAAACGGA
>XM_021577674.2
tagtgaagacatcaaaaccgatgaaataacacatatggaatcatgtaaccaaaaaattttttaaacaaatcaaaatatattttctatttgagattgttcaaagtagccacccttataGTGTAACCTTATGAACATGTCCAATGAAAGCATTTACAACAGCGGATTCATTTTCTAGAGTTGATTGTGCAGTTTGTTCTGAGGCGTGTGAAGGATGCGACCGTAATTACATGCATTTCAGTCATCGTCTCTTAGCTGAAGCTCAGGTGATAAAGCTACTGGACGAACACCTGAGTGTGTTCAGTGGTGTAATTTTACCCTTGTGCTGTTGAGGACTATTTAGACTGGTTTAGAGAGGTGTAATACTCTGGGAAGATTTGTTTATAGCGTAGGAGTGTTTTCCATGTGTGCTGTTGTTTTCTGCTTTTGGTTAGCTCAGGCAAATTTGTATCCTTAGTGATATGTACTAGACTGGCAAGCCACCTTTTTGGAATACATTTGCTTCCTGAATCTGTTTCTCTttatccccatctctccccatctttctccaGGTATCCTCCTTCTGTACAGAGGCCCTGACCATATGCAACTCCCTCCTCCATCCGCACACCCCCTCACCCTCAAACCCCCCCAGGCATCCAACCTCCTAGGGGGGCCCACCCCAGGACCTCCCTTCCCCAGCTCCCTGGACAACCACCTACCTCTGGTTCTTCCAGGGCTCTCCGGCGGCCAGAGACCCGTTTTCATCCTCTACGACAAAGAAGAGGCATCGGATGTGGAGATTTCGCTAGACAGCGATTCGGACGATGGCGTGTTAATCGTGCCACAGAGGATGCTGATGTTGGAAAGCCAAGATGGCACCAGCGCTGCGGCCACTCTTCCCGGGTCTTCCTTAGCACCAGGTGGCGTCACACTCCCCATGCCCTGTCCAAGGGGCGACCCGGGTGGGGacatctccctccccctttccaacgaccttccctctacctccctccctcacctcccctcctccaccccaaaCTACACCGTCAACTTGTTCCCTCCAGCTCCGCTAGTCTCTCTGGTTCCCCCTCTCAACTCCACCGGTGTGGCCCAACTCGGGGAACCCTCTGTGGGGTTAGGAGTCGGGACTGACTCCCTGCCTGGAGCCCAGCTCCAGCAGATGTTGCTCCAGGGCCAGCCTCCAGCACCAGGTCAACCTACAGCACTGGATCTCCCCATACAGGTTCACCAGAACCAGTTAGCCCAGTCCAGCAGAGCCCTACAGCAGCAACATTAATCCGTTGACGAAGATCACACTGTCATTCATATCAACCGCTCTGATGAAGAAGAGGATGAGCtggaagaggaagagagcgaTTTCCCAGATGAGGATATTTGATGATGAAGACCTTGATGATTATGAGGCggaagaggggggagatggaggatgaagaagagggagagattcGGCTGTTGGacggagaagggaggagaggcgGGATGGGAGGACGAGAGGAAGGAGAGGTGCTCAGAGGgtaggtggaggagggagggataggaggatTCCGAgtggagagcgagggggagggagggataggaggatTCCGAGTGGAGAGCAAGGGGGAAGGAGGGATAAAGGCTCAGGAGGTAGAGCGCATCAGAGtgctggaggaagagagagagggagacgaggATGCCAATGAAGGAATGAATGATCCGACCATGCCTCAGATTCTGTGTGTGACGGGCGGAGCTCTGAGAGAGAGCTAGCTCAGGCAGAGCTAGATGAGGAAGGGGCCGGGCATGGGCAGAAAGTGAGGTCATGGGAGCAGAAGGGAGGCAATCGGCTGGAGGGAACGTCCTCTTCTGAAGACGGTCCTGCTGCTCAACACCAACAGGAGGCGGAGCCTGCACCGGAAGTGAGGGTGGACGGTGACGATCAGCCATCCAATCAGGAGGGAGAAATATCCAAACAGGGCGGCGACAATACCGGACAGGATATGAGGTCATCAACAGCTCCGagggagagcaagggagaggggCCTGaacgagagaaagaaggagaggatgggagagggatgaagagagagagaaaggaggaaggaacaggacaggaacagagaAGAAAAATGTAAGAAAAAGACTCTCAAACACACTGTTCGAAATGTGTCCATATAACCATTACACCACTCAGGCTTTTTATACTGTACAACCCACACATTTCCCATGTGTTACATGGACATGGCTTAGGGGGAATACTTTGCAGATATACAAATGATGTTGGTTAATGACCGTTGTGCATTTCCTCTGCCACAGAATTGGCCAACAAGAGTTATCTAACAACCCACACTCTCTCTCAGTTGGATGAAGAAGCGATGGCGTCCATGCTAGCCGACATCGTAGCCTGCCCTCcagacaatgtagaaaatgtgcCCTCTGCCCATCCTAAACAAGGCCAGGCACGGCTCCATCACAATACCTTCAGAACAACTCGATTTTTAGCCCCTAGTCTCACACATTCTTTCATTATCAACATACTGCTAAGACAATGTTCAACACATTGAGGCTGGGTTTAGAATTGGCaccccaattctgatattttttccactaatttgtctgttttatttttattttattttttacacccctttttcttcccaatttcatggtatccaattggtcttgtctcatcgctgcaactcccgtacggactcgggagaggtgaagttCGAGAgctgtgtgtcctccgaaacacgactcAACGACtcaactgcttcttgacacaatgcccacttaacctggaaagccagccgtaccaatgtgtcggaggaaacactgtacacctggtgaccgtgtcagcgtggaGTCTCTAGTGCTCAATGGGAtgaggacatccctgccggccaaaccctcccctaacctggacgacgctgggccaactgtgcgccatcccatgggtctcccggtcgcggtcggctgcgacagagcctggactcgaacccagaatctctagtggcacagcttagcactgcgatgcagagccttagaccactgtgccactcgggaggcctctcactaattggtcttttgaccaatcacatcagatctttttcagagctgatctaatTGTTCAAAAGACGGATTTAGTGAAATAAATATCAgaactgggctgcctgtgtaaacacagccagccATAGAGGTTGGAATTAGATCGGTCTTAAACGATCACGTTTCGTCTTGAATGCAGGACAGTAGATGCATTTGTTATACAACTCTCTGGgctattattatttaaaaaacgcTTCAATTATTTTACATCAAAACATAAAGACTTTGCAGCTCGTACTGGTGTGTGCTGTGTTACTGAGTGGAGTAGTCACGTGTTTTTGGATctttatagacagtatatgactTCTGTTCTTTTTGTTCTCACGTCTTTTCTTACAAAATAAACGTCAAATGCAAACCTGTTGAAACGGA
>TU1988000
GGAGGTAGAGCGCATCAGAGtgctggaggaagagagagagggagacgaggATGCCAATGAAGGAATGAATGATCCGACCATGCCTCAGATTCTGTGTGTGACGGGCGGAGCTCTGAGAGAGAGCTAGCTCAGGCAGAGCTAGATGAGGAAGGGGCCGGGCATGGGCAGAAAGTGAGGTCATGGGAGCAGAAGGGAGGCAATCGGCTGGAGGGAACGTCCTCTTCTGAAGACGGTCCTGCTGCTCAACACCAACAGGAGGCGGAGCCTGCACCGGAAGTGAGGGTGGACGGTGACGATCAGCCATCCAATCAGGAGGGAGAAATATCCAAACAGGGCGGCGACAATACCGGACAGGATATGAGGTCATCAACAGCTCCGagggagagcaagggagaggggCCTGaacgagagaaagaaggagaggatgggagagggatgaagagagagagaaaggaggaaggaacaggacaggaacagagaAGAAAAATTTGGATGAAGAAGCGATGGCGTCCATGCTAGCCGACATCGTAGCCTGCCCTCcagacaatgtagaaaatgtgcCCTCTGCCCATCCTAAACAAGGCCAGGCACGGCTCCATCACAATACCTTCAGAACAACTCGATTTTTAGCCCCTAGTCTCACACATTCTTTCATTATCAACATACTGCTAAGACAATGTTCAACACATTGAGGCTGGGTTTAGAATTGGCaccccaattctgatattttttccactaatttgtctgttttatttttattttattttttacacccctttttcttcccaatttcatggtatccaattggtcttgtctcatcgctgcaactcccgtacggactcgggagaggtgaagttCGAGAgctgtgtgtcctccgaaacacgactcaaccaagccgcactgcttcttaacacagcgcgcatccaacccggaagccagccgcac
>TU1988001
GGAGGTAGAGCGCATCAGAGtgctggaggaagagagagagggagacgaggATGCCAATGAAGGAATGAATGATCCGACCATGCCTCAGATTCTGTGTGTGACGGGCGGAGCTCTGAGAGAGAGCTAGCTCAGGCAGAGCTAGATGAGGAAGGGGCCGGGCATGGGCAGAAAGTGAGGTCATGGGAGCAGAAGGGAGGCAATCGGCTGGAGGGAACGTCCTCTTCTGAAGACGGTCCTGCTGCTCAACACCAACAGGAGGCGGAGCCTGCACCGGAAGTGAGGGTGGACGGTGACGATCAGCCATCCAATCAGGAGGGAGAAATATCCAAACAGGGCGGCGACAATACCGGACAGGATATGAGGTCATCAACAGCTCCGagggagagcaagggagaggggCCTGaacgagagaaagaaggagaggatgggagagggatgaagagagagagaaaggaggaaggaacaggacaggaacagagaAGAAAAATGTAAGAAAAAGACTCTCAAACACACTGTTCGAAATGTGTCCATATAACCATTACACCACTCAGGCTTTTTATACTGTACAACCCACACATTTCCCATGTGTTACATGGACATGGCTTAGGGGGAATACTTTGCAGATATACAAATGATGTTGGTTAATGACCGTTGTGCATTTCCTCTGCCACAGAATTGGCCAACAAGAGTTATCTAACAACCCACACTCTCTCTCAGTTGGATGAAGAAGCGATGGCGTCCATGCTAGCCGACATCGTAGCCTGCCCTCcagacaatgtagaaaatgtgcCCTCTGCCCATCCTAAACAAGGCCAGGCACGGCTCCATCACAATACCTTCAGAACAACTCGATTTTTAGCCCCTAGTCTCACACATTCTTTCATTATCAACATACTGCTAAGACAATGTTCAACACATTGAGGCTGGGTTTAGAATTGGCaccccaattctgatattttttccactaatttgtctgttttatttttattttattttttacacccctttttcttcccaatttcatggtatccaattggtcttgtctcatcgctgcaactcccgtacggactcgggagaggtgaagttCGAGAgctgtgtgtcctccgaaacacgactcaaccaagccgcactgcttcttaacacagcgcgcatccaacccggaagccagccgcac

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036957782.1 False 3698 mRNA 0.53 6 38956139 38967877
XM_021577674.2 False 3459 mRNA 0.50 2 38964142 38967877
TU1988000 False 945 lncRNA 0.51 3 38966041 38982550
TU1988001 True 1174 lncRNA 0.49 2 38966041 38982550

Neighbor

gene id symbol gene type direction distance location
arrb2b LOC106608931 coding upstream 17020 38867935 ~ 38939119 (+)
hmgb3a LOC106608930 coding upstream 91609 38857116 ~ 38864530 (+)
LOC110500344 LOC106608928 coding upstream 216431 38726432 ~ 38739708 (+)
LOC110500343 mtm1 coding upstream 235337 38662084 ~ 38720802 (+)
LOC110515117 LOC106608926 coding upstream 301733 38542379 ~ 38654406 (+)
alox12 LOC106608934 coding downstream 1506 38969383 ~ 38986233 (+)
zgc:92664 LOC106608937 coding downstream 35861 39003738 ~ 39022864 (+)
LOC118942927 NA coding downstream 170665 39138542 ~ 39154522 (+)
nat16 LOC106608942 coding downstream 211270 39179147 ~ 39211035 (+)
LOC110500362 LOC106608944 coding downstream 260771 39228648 ~ 39237917 (+)
G1735932 pelp1 non-coding upstream 738 38943178 ~ 38955401 (+)
G1735820 NA non-coding upstream 286216 38669409 ~ 38669923 (+)
G1735778 NA non-coding upstream 327730 38592329 ~ 38628409 (+)
G1735795 NA non-coding upstream 327987 38627784 ~ 38628152 (+)
G1735784 NA non-coding upstream 347014 38607190 ~ 38609125 (+)
G1735986 NA non-coding downstream 66632 39034509 ~ 39178178 (+)
G1736042 NA non-coding downstream 136078 39103955 ~ 39105859 (+)
G1736065 NA non-coding downstream 175833 39143710 ~ 39144316 (+)
G1736093 NA non-coding downstream 223565 39191442 ~ 39191854 (+)
LOC110500301 LOC106609063 other upstream 873865 38076983 ~ 38083972 (+)
G1734961 NA other upstream 909633 38045108 ~ 38046506 (+)
G1734960 NA other upstream 911073 38043091 ~ 38045066 (+)
cited1 LOC106609035 other upstream 1192881 37758759 ~ 37765562 (+)
G1736098 NA other downstream 265787 39233664 ~ 39289670 (+)
G1736484 LOC106608963 other downstream 907879 39875756 ~ 39876950 (+)
G1737353 NA other downstream 1094829 40062706 ~ 40063325 (+)
LOC110500409 LOC106599480 other downstream 1433627 40401452 ~ 40404840 (+)
nat16l LOC106608945 coding downstream 263281 39245831 ~ 39256597 (+)

Expression


Co-expression Network