alox12 (LOC106608934)


Basic Information

Item Value
gene id alox12
gene name LOC106608934
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 38969383 ~ 38986233 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021577673.2
aaagtgatagagggagggggagagagagaagccaagTCATTAGCTTGGAAACGTGGACAGGTAGTGAGAGGGTGTGAATGaaagaggattttttttaaagtgtattTTGAAGTGTAGCAGACTGCTGGTGGATGACTGAACCGGTTGACAGTGGAGTGGACTGACTAACTTTCTGAGTGAGAtttcagagagagggaagagaggagagggggaagaggagagagagagagagggttgctCTGGAGTGAAGAAAATTTGCACTCtacacaaagaaagagagagagtgagggaagaggAAATGGGGACGGGGGAAGAGTTAGGTACACGGAAataaacaggagagagaaagaggtgtagAGAAAAGTGTCCGGAGCCTAACAGTGAATGTTCTATCTTTCCCTAACAGCAGTGAGTGTTTTTCGATGGAGGAATATAAGGTGACAGTTGCCACAGGCACATCAGAGTATTCCGGCACCAATAACTACATATATGTCACCCTGGTTGGAGAGAAtggacagagtgagagaacaaTCCTGGACAACCCTGGACTGGACTTCTGTAGAGGAGCGGTGGATGAGTACAAGGTGTGTAGCCCAGCCCCTCTGGGTCCTCTCCTCCTGGTTCGTCTGGAGAAGCAGCGTTACTGGGTTGAGGATAACTGGTTCTGTCGCTATGTCACCGTGGAGCCACCAGGTGGTGGTATAGCCCTCACCTTCCCCTGCTACCGCTGGCTCATAGGAGACGTCAAGGTGGAGATACGAGAAGGCACAGcGAAGAGACTCTGTGAAGATACCTCTCCTCAGCTATTGGCTCACAGAAAAGCAGAACTGCAGGAGAGACAAACGATATACAGATGGACTGCATGGGCTTCTGGGATTCCCAAGTGTATCGATGCCAAGACCGAAGCAGACCTGCATCAGGACGTACGTTTTGACAGCGAGAAAAGGAGCGACTTTGAGGGTTCCTTACACTATGCTATTCTAGAGCTGTCTCTGAAGAAACTAGCCATCAGGTTTGGAAAGTCATGGGATGATCTGGAGGACTTTAAACGATGCTTCTGGAAACTCAAAAGCCCCATAGctgAGTACTGTATGGAGCACTGGAAGGAAGATTGGTTCTTTGGGTACCAGTGTCTGAATGGTTCAAACCCCCGCATGATCCAGCGCTGCAAGGAGCTTCCAGGAAACTTCCCCGTGTCTGGGGACATGGTGCAGGGGTCGCTGGCACCCAGGACCACCCTGGACAAGGAGCTCAAGGCTGGTAACATCTACTTGATTGACTATGCCATTATGGATGGTGTTCCCACCAATGTAATCAGGGGGAAACCACAGTACATCGCTGCACCTCTGTGTCTACTATATGAGCACCCTGACCAGGGACTCATACCCATTGCCATACAGCTAGGACAGACTCCTGGCTTGGACACCCCCATCTTCCTGCCTAATGACCCCCCCCTGGCCTGGCTATTGGCTAAGATTTGGGTCCGTCACTCAGAGTTCCAGGTGTTCCAGTTGCTGTCACACCTGTTGAGAACGCACCTGTTGGTAGAAGTGTTCTGTGTGGCTACGTTACGTCAACTTCCCGCTGTACACCCTGTATACAAGCTCCTGGCCCCCCACCTGCGCTACACTCTGGAGATCAACTGCAGGGGACGGACTCAGCTCGTCTCCGCTGACGGCATCTTCAAAAGGGTGGTGTCTACAGGAGGGGAGGGCCTGCTCGTCCTGTCCCAGAGAGAGTACAAGGTCCTGACCTACcgctctctccagccctgctgGGACTTCCAACAGCGCGGAGCCACCACGCTCAAAGACTACTTCTACAGGGAGCACAGCCTCATGCTGTGGGACGCCATACACAGTTTTGTCTCAGGGATGATATCTGTGTACTACCAATGTGACAGTGATGTGGTGGAGGACCCTGAGCTACAGACCTGGATAAAGGACATCGCTGAGGAGGGCTTTGTCGATGTCCCCACGTTTGGCTTGTCCAACGAACtcaaaaacaaagcagagctggTTACCTTGCTGAGTGTAGCCATCTTcacgagcacagcacagcacgCAGCCACCAACAATGGACAGTTTGACTGGTGTGCTTGGGTACCCAACACCCCGTGCACCATGCGTCACCCCACGCCAACCGACAAGGATGCTGTTACCATGGAGATGATAATGGACAGCCTGCCTGATGTCAGCCAAACATGTTTGGAGATGGCGATCACATGGCACCTGGGGCGGCCACAACCTGATGCAGTCCCATTGGGTCAGTATCCAGAGCAGTACTTCACTGAGCCACAGGCCCAGGAGGTGATTGACAGGTTCAGAAAGGAACTGAAGGATATAGAGGAACACATCCTGAGCCAGAACCAGGGACTGGAGCTACCTTACCTCTTCCTCCTGCCCAGTCGCATCGAGAACAGCATTACTATATAGATTAGACCCGAATGTCTTATCACCATTACTTTTTTACTAACTGAGGAGCAGGGCCGGACAATCGCATTTGGGGCCCCGGGGCCCTGCTGAGgagcatcccactgggcacagacatcagttcaacttCTAGTTTTgatatacagttccagtcaaaagtttggacacacatactcattcaagggcttttctttactttgactattttctacattg

Function

NR:

description
arachidonate 12-lipoxygenase, 12S-type-like

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0005634 nucleus cellular_component
GO:0005506 iron ion binding molecular_function
GO:0004052 arachidonate 12(S)-lipoxygenase activity molecular_function

KEGG:

id description
K00454 LOX2S; lipoxygenase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021577673.2 True 2648 mRNA 0.51 14 38969383 38986233

Neighbor

gene id symbol gene type direction distance location
LOC110500354 LOC106608903 coding upstream 1506 38956139 ~ 38982550 (+)
arrb2b LOC106608931 coding upstream 30264 38867935 ~ 38939119 (+)
hmgb3a LOC106608930 coding upstream 104853 38857116 ~ 38864530 (+)
LOC110500344 LOC106608928 coding upstream 229675 38726432 ~ 38739708 (+)
LOC110500343 mtm1 coding upstream 248581 38662084 ~ 38720802 (+)
zgc:92664 LOC106608937 coding downstream 17505 39003738 ~ 39022864 (+)
LOC118942927 NA coding downstream 152309 39138542 ~ 39154522 (+)
nat16 LOC106608942 coding downstream 192914 39179147 ~ 39211035 (+)
LOC110500362 LOC106608944 coding downstream 242415 39228648 ~ 39237917 (+)
nat16l LOC106608945 coding downstream 259598 39245831 ~ 39256597 (+)
G1735932 pelp1 non-coding upstream 13982 38943178 ~ 38955401 (+)
G1735820 NA non-coding upstream 299460 38669409 ~ 38669923 (+)
G1735778 NA non-coding upstream 340974 38592329 ~ 38628409 (+)
G1735986 NA non-coding downstream 48276 39034509 ~ 39178178 (+)
G1736042 NA non-coding downstream 117722 39103955 ~ 39105859 (+)
G1736065 NA non-coding downstream 157477 39143710 ~ 39144316 (+)
G1736093 NA non-coding downstream 205209 39191442 ~ 39191854 (+)
LOC110500301 LOC106609063 other upstream 887109 38076983 ~ 38083972 (+)
G1734961 NA other upstream 922877 38045108 ~ 38046506 (+)
G1734960 NA other upstream 924317 38043091 ~ 38045066 (+)
cited1 LOC106609035 other upstream 1206125 37758759 ~ 37765562 (+)
G1736098 NA other downstream 247431 39233664 ~ 39289670 (+)
G1736484 LOC106608963 other downstream 889523 39875756 ~ 39876950 (+)
G1737353 NA other downstream 1076473 40062706 ~ 40063325 (+)
LOC110500409 LOC106599480 other downstream 1415271 40401452 ~ 40404840 (+)

Expression


Co-expression Network