LOC118942927


Basic Information

Item Value
gene id LOC118942927
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 39138542 ~ 39154522 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005038594.1
ttagccaagcaagggaagtttgcaaccccctcagccctcgtttttaattttgtttgcgagtgtacaattatgttcacctCGGGGACTGAAATGCCCCATAATTAAATTCGCAATGATTGTtcatccgctaagaaaagtccACCAAAACTTAAAACCTCAACATCAATATGAaatcaacatacaagtAGAATAACCCTAACCCACCTTATGGTGGCCGAGTGGGCTTGCAGTACGAGGCAGAGGGAGACTCCTCCACCGTCTCCCTACCATGGAACACAGGCACAGGTGTCCATCCAGGAGACCATCTACCAGTTCCTGGGGGGCTGATAGGGACGCAGACACCTGATAGGGACGCAGACACAGACACCTGAACCGACCGACCTCTTCAGGGCAACGTTTTGCATTGAGTGACCCTGGCAGCCAATCAAAGGCGGAAAGAAGGACAGAATGccacatttaaaatgtattatatactgtatttctttGTCGTCAAAATTTGCAAAAATTAGTCTAGCGCTTTTGGAATTTCTGATGCTCCCAGAATGTCTAGCTTTCATTTCAAtgactgttagcaagctggacaaaagtgaagagactataaatgaAGGTCCAATATAATTTCTACAAACTTTTGATTTGGTTTTAGTAATTTCAATGTCGATAGACATCGTTTTGCTgcgacaaaaaaaacaaaaaaaaaaaacagattgtaTAGGCTCTCGGGCCTTGAGTTTGACAATTGTCATTCAACCGGTTTAAAAAAGCTGTAAAATATGTTATACAGTGGTTGCACTTTATAAACTGGTGTACTTTCATGGTAAATTACTACATAGGGATACTAGCTAATGTTGACTTTAAAAACCTATTCCATACTTAAATACCTTTTTTCAATATTGCCTGACAGTTTATGATAAGCAGACCGGAGATAAAGTCACTCTGAGATGTCTTGGATCATCCTTTAAATCAGTGTTTCATCGACCACCGGGAAAAAAACAGACTGGAACAAGATCTGTATTGGAAGGTCTCCTCTTTGGGAGCGACGACTGAATGAAACAGCAAAAACTGTTTTACCAATGATATGATGCAACTTATGCCAGTTTGACAATTAGCAGTACTCATTTTTAACGTTGGTACTAAAGCTAATGAATAATGTTGTAATATCACATGTATATAATAACATGGCCTAACAACGTGTCTGTATACAGAGAACAGATATTGA
>TU1988128
CCTCCCTTTAGTCACTTCTAAGTCATTGTATATACAGCGTAATATGCACCTCAGCTCTTGTTGAATGTCATGTTAAGATAGCGGTTGCCCCTGAGCAATCATGGGTCTCAAGAGAACCCATGCTATGGATGTACTATGGTGTTTTCTACTATTGATGGCAGTTATAGAGAATAACCCTAACCCACCTTATGGTGGCCGAGTGGGCTTGCAGTACGAGGCAGAGGGAGACTCCTCCACCGTCTCCCTACCATGGAACACAGGCACAGGTGTCCATCCAGGAGACCATCTACCAGTTCCTGGGGGGCTGATAGGGACGCAGACACCTGATAGGGACGCAGACACAGACACCTGAACCGACCGACCTCTTCAGGGCAACGTTTTGCATTGAGTGACCCTGGCAGCCAATCAAAGGCGGAAAGAAGGACAGAATGccacatttaaaatgtattatatactgtatttctttGTCGTCAAAATTTGCAAAAATTAGTCTAGCGCTTTTGGAATTTCTGATGCTCCCAGAATGTCTAGCTTTCATTTCAAtgactgttagcaagctggacaaaagtgaagagactataaatgaAGGTCCAATATAATTTCTACAAACTTTTGATTTGGTTTTAGTAATTTCAATGTCGATAGACATCGTTTTGCTgcgacaaaaaaaacaaaaaaaaaaaacagattgtaTAGGCTCTCGGGCCTTGAGTTTGACAATTGTCATTCAACCGGTTTAAAAAAGCTGTAAAATATGTTATACAGTGGTTGCACTTTATAAACTGGTGTACTTTCATGGTAAATTACTACATAGGGATACTAGCTAATGTTGACTTTAAAAACCTATTCCATACTTAAATACCTTTTTTCAATATTGCCTGACAGTTTATGATAAGCAGACCGGAGATAAAGTCACTCTGAGATGTCTTGGATCATCCTTTAAATCAGTGTTTCATCGACCACCGGGAAAAAAACAGACTGGAACAAGATCTGTATTGGAAGGTCTCCTCTTTGGGAGCGACGACTGAATGAAACAGCAAAAACTGTTTTACCAATGATATGATGCAACTTATGCCAGTTTGACAATTAGCAGTACTCATTTTTAACGTTGGTACTAAAGCTAATGAATAATGTTGTAATATCACATGTATATAATAACATGGCCTAACAACGTGTCTGTATACAGAGAACAGATATTGAACACTCAAAACATCTTTGAAATGTGTAATAAAATCAAAGATTTAT
>TU1988129
CCTCCCTTTAGTCACTTCTAAGTCATTGTATATACAGCGTAATATGCACCTCAGCTCTTGTTGAATGTCATGTTAAGATAGCGGTTGCCCCTGAGCAATCATGGGTCTCAAGAGAACCCATGCTATGGATGTACTATGGTGTTTTCTACTATTGATGGCAGTTATAGAGAATAACCCTAACCCACCTTATGGTGGCCGAGTGGGCTTGCAGTACGAGGCAGAGGGAGACTCCTCCACCGTCTCCCTACCATGGAACACAGGCACAGGTGTCCATCCAGGAGACCATCTACCAGTTCCTGGGGGGCTGATAGGGACGCAGACACCTGATAGGGACGCAGACACAGACACCTGAACCGACCGACCTCTTCAGGGCAACGTTTTGCATTGAGTGACCCTGGCAGCCAATCAAAGGCGGAAAGAAGGACAGAATGccacatttaaaatgtattatatactgtatttctttGTCGTCAAAATTTGCAAAAATTAGTCTAGCGCTTTTGGAATTTCTGATGCTCCCAGAATGTCTAGCTTTCATTTCAAtgactgttagcaagctggacaaaagtgaagagactataaatgaAGGTCCAATATAATTTCTACAAACTTTTGATTTGGTTTTAGTAATTTCAATGTCGATAGACATCGTTTTGCTgcgacaaaaaaaacaaaaaaaaaaaacagattgtaTAGGCTCTCGGGCCTTGAGTTTGACAATTGTCATTCAACCGGTTTAAAAAAGCTGTAAAATATGTTATACAGTGGTTGCACTTTATAAACTGGTGTACTTTCATGGTAAATTACTACATAGGGATACTAGCTAATGTTGACTTTAAAAACCTATTCCATACTTAAATACCTTTTTTCAATATTGCCTGACAGTTTATGATAAGCAGACCGGAGATAAAGTCACTCTGAGATGTCTTGGATCATCCTTTAAATCAGTGTTTCATCGACCACCGGGAAAAAAACAGACTGGAACAAGATCTGTATTGGAAGGTCTCCTCTTTGGGAGCGACGACTGAATGAAACAGCAAAAACTGTTTTACCAATGATATGATGCAACTTATGCCAGTTTGACAATTAGCAGTACTCATTTTTAACGTTGGTACTAAAGCTAATGAATAATGTTGTAATATCACATGTATATAATAACATGGCCTAACAACGTGTCTGTATACAGAGAACAGATATTGAACACTCAAAACATCTTTGAAATGTGTAATAAAATCAAAGATTTATTTCCTGACTCATTTTTGTAAACTGCATAATATCAAAGCAACCAAAAATGACAAACCACAATCAAATGAAACATGAATGAAGGTTAAAGTGAGACATTTCTAATTAAAGAACTTAAGTACTGCTGTACTAAT

Function

NR:

description
mucin-2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005038594.1 False 1219 mRNA 0.40 3 39138542 39154346
TU1988128 False 1245 lncRNA 0.39 3 39148396 39154391
TU1988129 True 1376 lncRNA 0.38 3 39148396 39154522
Loading

Neighbor

gene id symbol gene type direction distance location
zgc:92664 LOC106608937 coding upstream 115678 39003738 ~ 39022864 (+)
alox12 LOC106608934 coding upstream 152309 38969383 ~ 38986233 (+)
LOC110500354 LOC106608903 coding upstream 170665 38956139 ~ 38982550 (+)
arrb2b LOC106608931 coding upstream 199423 38867935 ~ 38939119 (+)
hmgb3a LOC106608930 coding upstream 274012 38857116 ~ 38864530 (+)
nat16 LOC106608942 coding downstream 24801 39179147 ~ 39211035 (+)
LOC110500362 LOC106608944 coding downstream 74302 39228648 ~ 39237917 (+)
nat16l LOC106608945 coding downstream 91485 39245831 ~ 39256597 (+)
LOC110500364 LOC106608946 coding downstream 168519 39322865 ~ 39331908 (+)
zanl LOC106608949 coding downstream 265784 39420130 ~ 39453254 (+)
G1736042 NA non-coding upstream 32683 39103955 ~ 39105859 (+)
G1735932 pelp1 non-coding upstream 183141 38943178 ~ 38955401 (+)
G1735820 NA non-coding upstream 468619 38669409 ~ 38669923 (+)
G1735795 NA non-coding upstream 510390 38627784 ~ 38628152 (+)
G1736093 NA non-coding downstream 37096 39191442 ~ 39191854 (+)
G1736133 NA non-coding downstream 141716 39296062 ~ 39302368 (+)
G1736154 ap1s1 non-coding downstream 186292 39340638 ~ 39362957 (+)
G1736209 NA non-coding downstream 296514 39450860 ~ 39451178 (+)
G1736377 NA non-coding downstream 550262 39704608 ~ 39705136 (+)
LOC110500301 LOC106609063 other upstream 1056268 38076983 ~ 38083972 (+)
G1734961 NA other upstream 1092036 38045108 ~ 38046506 (+)
G1734960 NA other upstream 1093476 38043091 ~ 38045066 (+)
cited1 LOC106609035 other upstream 1375284 37758759 ~ 37765562 (+)
G1736098 NA other downstream 79318 39233664 ~ 39289670 (+)
G1736484 LOC106608963 other downstream 721410 39875756 ~ 39876950 (+)
G1737353 NA other downstream 908360 40062706 ~ 40063325 (+)
LOC110500409 LOC106599480 other downstream 1247158 40401452 ~ 40404840 (+)
G1736065 NA non-coding upstream 4080 39143710 ~ 39144316 (+)

Expression

LOC118942927 Expression in all Baseline Samples

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LOC118942927 Expression in each Bioproject

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LOC118942927 Expression in each Sample
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Co-expression Network