LOC110500364 (LOC106608946)


Basic Information

Item Value
gene id LOC110500364
gene name LOC106608946
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 39322865 ~ 39331908 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021577695.2
GTGCTGCCGGTGATAACTCACTGAAACAGAAGCACAGCGAATGAGGCAACAGTAAGAAAACCTGCGGTGCTGTCCGTGGTAATACTCACTGAAACAGACGCACAGCGAATGAGGCAACAGTAGACAAACCAAAAGGGAGAAATAACTTTCTACTTTATACACACTTCCAAACAACACCGAGCTTTATTTGTGTTGAGTAGACATTGGTGTGTTGAGTTAGAGTAACACGTTGAATTAGAGAGATTTGAGGAGTGACAAGGAGGAGAAAGTAGCCTATCTGGTTTCACCGCAAGACACCAGGAGCATCACCTTCCCTCGCCCCCTCTTGTCCTTTCTGTGTGGTCATGATGTGGTCCCACTTCGCCACAAGTGCCCTTATCCTACTGGTTGTCTTGTTGAGACTTACCCTAACCCTCCCGCTCACCGCCTCCGTGGTGACCGAGACACACAGCCCCGGCGACAGCCATGCTCCTTCCCCTCTTGGACTTAGGCCAACCGAGGGAGAGAATGAAGGGAGGAAGGGCAGActtccacagagagagagagcagaagaggaggatgagcttTTTGGAGGCATGGACCCCAAAACATTAGCAGCCGTTCTGCTGGAGGCGATGAATAAGCCACACGGGGAAAGGAGGAACGGTGTGGAGGATGGGCGcaaggaaaaggagagaggaaaagaggagaatgagagagagaggcaggaggaggagaagggagaggaggtgagagccgCATTGGATGAGGAGGGAGCAGACCGAGACAGGGACGGTCGCGAGGAGCTTGAGCTGGTAATGGCAGCCGCTGCGGCGCAGGGcaaggaggagcgagagaggaatgaggaggaggaggaggagaggaagagagcacaggaggaggaggaaagactAACAGAGAAAGTGACTAGCCACACCACCAGCCAGACGATTCCTGGAAAGGAGAAACGACCTCCggcagaaggagaaagaggggaggaggtgggagtGAAGGAAGTGGGGGCCAGAGAAGATGCGCAGCAGGGACCACCCACCTCACAGGAGACCCAgcaagaggaagaagaggagcaacTAAGTCCAGATGAAGTGCAGAACCTACAGAGCATGTTGGAGGAACTGCAGAACTACAACACAGctaacaagagagagagggaggcccaggagcagagagggagagagagcagggcctACAGCCAAGACGACACAGACCAAGCCCTGATCCACAACCAGATAAAACCCAAAGCTAAAGGATACCCCCGAGCCATGTCGAAGAAGCTCAAATGGCAAGAGGAGATGCAGAAAGCCCTGAACATGCCCACTTATAGAGGAGGCAACTTCATGGACGACTTTGACAATCTGGCTCGACCGGCAGctgaggaggatgatgaggaaATGCTGAGCcccgaggaggaagagaggagggcaaaggaggagcaggaggaggtcaGGAGGCAGGCGATGGAAGCTCAGAGGGCCAAAGCCGAGGAGGAGAAGTTGGCGGACATAGCCTCGGACATGCTCCTGCAGTACATGGTCAAACAGGACAAAGGAAAGTACCAGAACAAGAAGACCCTGCTGTCCAACGCAGCGGAGGACAAGCGCTCTGACGAGGAGGTCGTCAGCGAGGACGATGATATTGATCCTCAGACCATTGATAAGCTCATCGAGATCTCCAGTAAGCTCCACCTCCCCGCGGACGACGTCGTTGACATCATCAGCGACgttgagaagaagaagaagaaagacgCTCCTGAGACATTGCCCTGGCAACGACCCCAGCAAAGACCCCTGGTTTACCCAGCAGCCAAAGCCGTCGATGCCCAGCCTTCACACCCCCGATACCCCACCCTGAAGCAGCCTCTCGCGGCCATCAATCCCCTCAAGGCCTGGTTCAAGGACAAATCTTCCATCAAACCCTCAAAACAAGACCTCTGGATCAAACCTCAACAGAAGTCCTTTCGGACTTCCTCCAACTATCCTATAACTACTAACAACAACTATCCCTTCTACCAACAGAAGCCCTATCGAGGCTACTACCCAATTTACTTCCCCCCTCCCAAGCCCAAACCCCTGTTCTATGCCAAGCCTTCCTACATGCTCAACGACCTCCTGTCGAATTCTCTGGACTACGACTTTGATTTCCCCCCCAAGAGGAGGTACCGTCCCTGGGTACAGCCCCGCCCGAGGAAGCCCCCCGCTGCACTCCGGCGGAACCTCTACTACCCCAATTACTCCAACTATCCCAACTACCTCCTCCCCCCACACCCCAGGACATACAACCCCCTACCCGTCCCCGTCCCCATGCCTAAACCTCGCTCGTCCCCACCCAGGGGTCAGGTTCAGCCTCGCCATCGGCATGGTTACTATTACCAAGCGCCCTCAGCACCTTTGGTGACCCGGGACCAAGATTACTATGGGATGCAGGGGATAGGGATGGGGCCGCAGCAGCAAGATAGCAATGAAGACCTGGAGAACTACATTCAACAGGTCTTTATGAAACCCAGGCCTAGGATGTTTCAGtgaaaagagaggaaagagagagagggggcgggaaggagggaggggaaaaggggaggaaaagagaacaatggattttttttttacaccactTACTTTTGATTTCAGGTTTTGCCTTGGTTTTGTCTCTTTAATGTACTGTTAGATTTTTGTCAAAGAGCAACACAAATTCCATGTAGCTTTTTTTTTGTATAGAGGAAAAATGAACTTGCAGATAGAAAAGTGAGGGAGTCAGGATGACACACATCCATTCATTCCTCTTGCTCTTTTCTTTGGAAGATGAAACTGAAGCTGTTGTCCAAAATGACTGAAAGAGGGGCACTAAACCAATCACATAAAGAACTATAGAACATACAGAACCATAGAACACTGACTCTATAGACTCATCTCATCATCCTGGGATTCTGGAAAATATGAGGGAGCGTCGGCATCGTTCAGAAGACCAACATTGAGGGGAaattgcaaatggcaccctattccctatgttgcgCAATACTTTTGTCCAGGgtccatggggctctggtcaaaagtagtgcactatatatatgggatagggtgccatttgggactcagcctgaCTATCATGTTCCAAAATGATCCAAAACTCATACAAGAGACTTACAGTTGTTAACAAATACACACATGTCAATGTTTGGAGCCAAAATGCACAGTCAAGTGTGTTTATATTCCAAAAGACTAGCCATCGCTATTGGAGAAGAGGCCCTAATGGATATAAAGCCTTTACCAATGTGTATCTGTTGTGTTTTATTGTTATCGGTGGTTCCATTGTCACCATTTCAGTTACACGTCGTTGGTTGTTTACAGAAAATGAAGCTTGCAAAAAAAATATCGAATTGGTCCTTTTCAAGAACTCACAGATAACAAACAGTTATCGTCAAGGGCAGAGAAAGTCATTGTTATTGTTACCGATACGCTTGATGATACGGTGCCATACTGTACGCAAATGCAGTCACTATTTATTAATCAAATACATTGTTTGTTTTTTGATTATTTGTTACTTGTCTGTTTTTAATCACTTCTGTTTTGTTATTTCCTGTCGTTATCACAGTGAGTTTGttccaacaacaaaaaactgtaaCATTTTTATGTCAATTGTCCGTCGGCACACTTTTTGATTAACTTATGAATATatgattgtatttatttaatgtaCTTGTAATGTACTTGTAATGTACTTGTAATGTACTTGTGTTTTTTCTACAAAGCAGTGCTAAGATTTACACATTCATACATTCCAAATATTTGTAAGACAAAGTGATTTTAAAGGAAAGAAACTGAAAATActgaaatacagttttatattgcCTTATTATGGTTTCCCCCTCATTTTGCTAAGACTGTTGACTTTGTAAAGGGGGTAGAATTGAGTTAAGCCCTTGTAGAGAAATGGGGTTGTGATTACAATTCCATTCAATCTCAAATTCGATTcacaaattgaaaaaaaaaatgggaaTTTTTCAATGAAACGGACTTGATTTGAAATGGAATCGTCCCTCACATACTCCCGATGAATGAGTGAAATGAAATTAGAATTAGGGAAAAGAAACTGAAAACAGTCCAGGATTTTcactctgttctactgtagagaAACCAATATGTCTCTGTGTTTATGCCTTTAGATGCTGGAAAGGACTGTGATTCAGTATCTCACCACAAACAAAAAAATCATTGTGTTATTGGAAATCAATATCTAATCACCTCCAAATCCTTACTCGTTCAATATTTCCTTGTAAACGAAACCCCAACAAAAAACGTTTTTtcccccgttttctccccaatttcgtggtatccaattgttttagtagctactatcttgtctcatcgctacaactcccgtacgggctcgggagagaca

Function

NR:

description
neurosecretory protein VGF-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021577695.2 True 4392 mRNA 0.47 2 39322865 39331908

Neighbor

gene id symbol gene type direction distance location
nat16l LOC106608945 coding upstream 66268 39245831 ~ 39256597 (+)
LOC110500362 LOC106608944 coding upstream 84948 39228648 ~ 39237917 (+)
nat16 LOC106608942 coding upstream 111830 39179147 ~ 39211035 (+)
LOC118942927 NA coding upstream 168519 39138542 ~ 39154522 (+)
zgc:92664 LOC106608937 coding upstream 300001 39003738 ~ 39022864 (+)
zanl LOC106608949 coding downstream 88222 39420130 ~ 39453254 (+)
trnaw-cca-56 NA coding downstream 238748 39570656 ~ 39570727 (+)
mpdu1b LOC106608952 coding downstream 263259 39595167 ~ 39600315 (+)
acox3 acox3 coding downstream 342064 39673972 ~ 39706202 (+)
LOC110500384 LOC106608960 coding downstream 496414 39828322 ~ 39856505 (+)
G1736133 NA non-coding upstream 20497 39296062 ~ 39302368 (+)
G1736093 NA non-coding upstream 131011 39191442 ~ 39191854 (+)
G1735986 NA non-coding upstream 144687 39034509 ~ 39178178 (+)
G1736154 ap1s1 non-coding downstream 8730 39340638 ~ 39362957 (+)
G1736209 NA non-coding downstream 118952 39450860 ~ 39451178 (+)
G1736377 NA non-coding downstream 372700 39704608 ~ 39705136 (+)
G1736434 NA non-coding downstream 444523 39776431 ~ 39842962 (+)
G1736473 NA non-coding downstream 526711 39858619 ~ 39858919 (+)
G1736098 NA other upstream 33195 39233664 ~ 39289670 (+)
arrb2b LOC106608931 other upstream 397937 38867935 ~ 38939119 (+)
LOC110500301 LOC106609063 other upstream 1240591 38076983 ~ 38083972 (+)
G1734961 NA other upstream 1276359 38045108 ~ 38046506 (+)
G1736484 LOC106608963 other downstream 543848 39875756 ~ 39876950 (+)
G1737353 NA other downstream 730798 40062706 ~ 40063325 (+)
LOC110500409 LOC106599480 other downstream 1069596 40401452 ~ 40404840 (+)
G1737866 LOC103384823 other downstream 1220103 40552011 ~ 40553853 (+)
G1738057 LOC100194703 other downstream 1661247 40955050 ~ 40997320 (+)

Expression


Co-expression Network