trnaw-cca-56


Basic Information

Item Value
gene id trnaw-cca-56
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 39570656 ~ 39570727 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>trnaw-cca-56
GACCTCGTGGCGCAacggtagcgcgtctgactccagatcagaaggttgcgtgttcaaatcacGTCGGGGTCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
trnaw-cca-56 True 72 mRNA 0.58 1 39570656 39570727

Neighbor

gene id symbol gene type direction distance location
zanl LOC106608949 coding upstream 117402 39420130 ~ 39453254 (+)
LOC110500364 LOC106608946 coding upstream 238748 39322865 ~ 39331908 (+)
nat16l LOC106608945 coding upstream 314059 39245831 ~ 39256597 (+)
LOC110500362 LOC106608944 coding upstream 332739 39228648 ~ 39237917 (+)
nat16 LOC106608942 coding upstream 359621 39179147 ~ 39211035 (+)
mpdu1b LOC106608952 coding downstream 24440 39595167 ~ 39600315 (+)
acox3 acox3 coding downstream 103245 39673972 ~ 39706202 (+)
LOC110500384 LOC106608960 coding downstream 257595 39828322 ~ 39856505 (+)
LOC110500831 NA coding downstream 374536 39945263 ~ 39952801 (+)
LOC110500392 LOC106608967 coding downstream 382552 39953279 ~ 39959230 (+)
G1736209 NA non-coding upstream 119478 39450860 ~ 39451178 (+)
G1736154 ap1s1 non-coding upstream 207699 39340638 ~ 39362957 (+)
G1736133 NA non-coding upstream 268288 39296062 ~ 39302368 (+)
G1736093 NA non-coding upstream 378802 39191442 ~ 39191854 (+)
LOC118942927 NA non-coding upstream 416134 39138542 ~ 39154522 (+)
G1736377 NA non-coding downstream 133881 39704608 ~ 39705136 (+)
G1736434 NA non-coding downstream 205704 39776431 ~ 39842962 (+)
G1736473 NA non-coding downstream 287892 39858619 ~ 39858919 (+)
G1737283 NA non-coding downstream 389347 39960074 ~ 39960286 (+)
G1737306 NA non-coding downstream 408009 39978736 ~ 39986609 (+)
G1736098 NA other upstream 280986 39233664 ~ 39289670 (+)
arrb2b LOC106608931 other upstream 645728 38867935 ~ 38939119 (+)
LOC110500301 LOC106609063 other upstream 1488382 38076983 ~ 38083972 (+)
G1734961 NA other upstream 1524150 38045108 ~ 38046506 (+)
G1736484 LOC106608963 other downstream 305029 39875756 ~ 39876950 (+)
G1737353 NA other downstream 491979 40062706 ~ 40063325 (+)
LOC110500409 LOC106599480 other downstream 830777 40401452 ~ 40404840 (+)
G1737866 LOC103384823 other downstream 981284 40552011 ~ 40553853 (+)
G1738057 LOC100194703 other downstream 1422428 40955050 ~ 40997320 (+)

Expression


Co-expression Network