mpdu1b (LOC106608952)


Basic Information

Item Value
gene id mpdu1b
gene name LOC106608952
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 39595167 ~ 39600315 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021577706.2
CTAGCGTGAGGGAACGGTTATTATTTGCACACTGTCTACATCACGTCACAGTTCCACAATGGCGAGCCCTGTTATGGAAGAACTTCCAAAGAATTCTGTGTTGGACCCACTGAAGGGGCTCCTGCTCACTTATTTCATGCCAGAATCATGTTACGACGAGTTTTTCCTCAATTTTAACTTTCTGGATGTGCCATGTCTAAAGATTGTGCTGAGCAAAGGTCTGGGCATTGGAATCATCCTGGGGTCTGTGATGGtaAAGCTGCCCCAGATCCTGAAGCTGATGGGGGCTAAGAGTGCAGATGGTCTAAGCTTCAACTCTGTCTTGCTGGAGCTGCTGGCTATTACCGGCACCATGGCCTATAGCATTGCTAACAGCTTCCCCTTCAGTGCCTGGGGTGAGGCCCTCTTCCTCATGTTACAGACAGTAGCCATCGGGTTCCTCATTATGCATTATGGAGGCAACACAGTCaaagGTGTGCTGTTCCTGGTGGTGTACTTTGGTCTGGTAGCTCTGCTGCTCTCCCCTGTAACGCCAATGCCTGTGGTCATGGCCATGCAGGCATCCAACATGCCTGCTATCATCATTGGCAGGCTTATTCAGGTTGTGACTAACTATCGTAATGGACACACAGGTCAGCTGTCTGCCATCACTGTGTTTATGCTGTTCGCTGGCTCCTTGGCTCGCATATTCACCTCAATAcagGAAACGGGTGACTCCCTGATGGCCCTGACCTATGTCATATCCTCTTCCTGTAACGGCCTTATCGCTGCCCAGCTCCTGTACTACTGGAACAGCAGCCCGGcacagaagaagaagacagaGTAGATAGACGGGTGCACATGAAATTAGTTGCCTCTaaattggcaccctatttccaatatagtgcactacttttgaccaggacccataaggctgtggtcaaaagtagtgcactatattgggaatagcgtgccattttggGATGCAGTAGAGAGTATACAGACAGGGTGCAgctcaaatggccccctattccatatgtagtgcactgctgaCCAGGGCCATGGACTCTAATGGTACACTATGTGAAATTGGGTGTCATTTGAGATTTGCACCAATTCACATCTAGAAATGTATACACTCTGCACTCCCCTACTGTAAGCTTAGCTCTGGACCAAACATTCTATTCCCACCACCCAAACCAAGGAACTCTATACTCTATCTGACTTCAATGATACTGTGACTACAGCCCAGTTAGACTAGCTCACAGAGAAATCATTAGTTTTGCCTCAGTGTTTTAGCTCAGGGAAGGGAAGGCTTGACACGCTTATTTCTCCATCCTGAACGCTGATTCTACTAAACGCCACAGAAGTGCCGATatggtgtagggtgaagttgccgcTTGACGCTGATCCTgagtcagtttagcatttttcccacttatggttaaggttaggattctgggaggggaagctgatcctatatctgtacctaggggaaacttcaacCCAGAGCTGTCAAAACACCCACTACGGTCAGTTGTTTTTGTCGTACTCCTACACGGGTTGTCCTCGGACCATAATCTAGAATGAAAACGCATTCCAGAACACAACCAGGAAGGTAACTATTCTAGCTATAATCAAGGGGTCAAGCAATAGAGGTTTACTGTGAaattctctgtctgtgtgtttaagtTAAATGTTCGAATTTTAAGTTGTTGAAGCTTTGTTGACTGAGTGTAATCTAaagcagcctggtctcagatccttTAATGCTTGTGCCAACTTCATTGCTGTACTTGGTAAACAATGTTTGGCGTGACGAGTTACAAGGATTTGGCATTATTGCACAAACAGGCTGGCACACAGGCTAGATCAAAATAACAACTGAACTAAATGGTTCAAATTATCAGTCCACATGATGTTTGTCTGTGTTTCTTTGTGCATATAGATGCTGTATTTGTTTAATGATAAATCACATATTTTATTGAATTCAATGAATGAGTCCACAATACTAAATAATTCATTCCAATTTGATTCAGAGTAACCTGGGAGCAGAAATTTGGGGTCATTATAGTTTTATGTTGAAGTCCAATTTCTCTGTTTAGTTTTAGTTTACTTGTTGAGATTCAACTTCTCATGTTAAGATGCTGCTTGCGCTTGTATGCGTCAAAAGCGAGTGCTACAGTTCTGAACATGGTAAGAGTTTATTtgaatgcaaaaatgtaataaaatctgttttgtttttgttgtgacTGC

Function

NR:

description
mannose-P-dolichol utilization defect 1 protein-like

GO: NA

KEGG:

id description
K09660 MPDU1; mannose-P-dolichol utilization defect 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021577706.2 True 2235 mRNA 0.44 7 39595167 39600315

Neighbor

gene id symbol gene type direction distance location
trnaw-cca-56 NA coding upstream 24440 39570656 ~ 39570727 (+)
zanl LOC106608949 coding upstream 141913 39420130 ~ 39453254 (+)
LOC110500364 LOC106608946 coding upstream 263259 39322865 ~ 39331908 (+)
nat16l LOC106608945 coding upstream 338570 39245831 ~ 39256597 (+)
LOC110500362 LOC106608944 coding upstream 357250 39228648 ~ 39237917 (+)
acox3 acox3 coding downstream 73657 39673972 ~ 39706202 (+)
LOC110500384 LOC106608960 coding downstream 228007 39828322 ~ 39856505 (+)
LOC110500831 NA coding downstream 344948 39945263 ~ 39952801 (+)
LOC110500392 LOC106608967 coding downstream 352964 39953279 ~ 39959230 (+)
LOC110500393 LOC106608968 coding downstream 372004 39972319 ~ 39997941 (+)
G1736209 NA non-coding upstream 143989 39450860 ~ 39451178 (+)
G1736154 ap1s1 non-coding upstream 232210 39340638 ~ 39362957 (+)
G1736133 NA non-coding upstream 292799 39296062 ~ 39302368 (+)
G1736093 NA non-coding upstream 403313 39191442 ~ 39191854 (+)
LOC118942927 NA non-coding upstream 440645 39138542 ~ 39154522 (+)
G1736377 NA non-coding downstream 104293 39704608 ~ 39705136 (+)
G1736434 NA non-coding downstream 176116 39776431 ~ 39842962 (+)
G1736473 NA non-coding downstream 258304 39858619 ~ 39858919 (+)
G1737283 NA non-coding downstream 359759 39960074 ~ 39960286 (+)
G1737306 NA non-coding downstream 378421 39978736 ~ 39986609 (+)
G1736098 NA other upstream 305497 39233664 ~ 39289670 (+)
nat16 LOC106608942 other upstream 385682 39179147 ~ 39211035 (+)
arrb2b LOC106608931 other upstream 670239 38867935 ~ 38939119 (+)
LOC110500301 LOC106609063 other upstream 1512893 38076983 ~ 38083972 (+)
G1734961 NA other upstream 1548661 38045108 ~ 38046506 (+)
G1736484 LOC106608963 other downstream 275441 39875756 ~ 39876950 (+)
G1737353 NA other downstream 462391 40062706 ~ 40063325 (+)
LOC110500409 LOC106599480 other downstream 801189 40401452 ~ 40404840 (+)
G1737866 LOC103384823 other downstream 951696 40552011 ~ 40553853 (+)
G1738057 LOC100194703 other downstream 1392840 40955050 ~ 40997320 (+)

Expression


Co-expression Network