LOC110500380 (htra3)


Basic Information

Item Value
gene id LOC110500380
gene name htra3
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 39731630 ~ 39745450 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021577716.2
CGTTTTTATTGTCAACGACCTCCTACTTTGCGGAGCTACTTTGGCTTAGTTTATTAATTCGACGATTttaaaaacaagcacacataaaacttgaaaaagACAAATAAAACCATCGaagataacacacaataaagtctgggattTATTTCCATTGTTGTCCTCTTGTGACATGGTGGTTGGTCAAGATCACTTGCGCTTTGGAGGGGCAGAGCCAGACCAGACGCAACGAATGATATTGGATCTTCAAAAAACTGAAAAAACAAAAGGCACAGCACGGCTGTGCTGAGACTCATTGGTGTTCATTGCAAATATAGCGCCAGCCAGTGCATCGGTTAGACGCACAATAACGGCATATTTGGGATCAGTTTCCACTACTTTGGGATAACGTTTCCCATTTAATCTGGATCAACAACGGGCGGCTGCATATGAGTTGAGAAGTTttcagttttaagaaaatcccGGATGTCTTCCCTGCAAGCGTAATTTTATATCGACAGTCTTGTGAAAGAGATGCGTAAAAGTGTGGAGTGTTGCTCGTTGTTCAATCTTCCCAAATTACCGGCGACCGTTTTACCACGAACATGACCGTGTAAATACTTAGCCTAatattatttgttattattttatagTTTTTATTTTCTCATATCTCCACTGCACTTGATCGCAAACGATGCAGGTCCTACTGTTTGCTACGGTTCTTTACTATATCGTGAACTTCGTCGGGGCTGAGCCCAAACCAAAATGCTCAGAGCGGTGCGACGTGAGCACTTGCCCCAGCCCTAGCTGCGCGATGGGGTACGTTCCAGACCGATGCAACTGCTGCCTGGTTTGCGCCCAGGGAGAAAGCGACCCATGCGGGCGTAAAGATGACCTACCCTGTGGTGATGGACTCGAATGCAAGCACCCGGCCGGAAAGCGGCTAGCCAAGGGCTTTTGTCAGTGCAAGTTGGGTCACAAAGTTTGCGGCAGTGACGGCGTTACCTATGGGAACGTGTGTCAGCTGAAGGCGCAGAGTAGGAAGGCTCTGCAGCAAGGGCTGCCTGCCGTCACCTCCGTCCAGAAGGGACCATGCGAAATCAACAATAACAAAGGTACTTCACACCCCACCAGTCCCAGGTACAAGTTTAACTTCATAGCTGACGTGGTTGAGAAGATTGCGCCGGCTGTTGTCCACATTGAACTTTTCCTCAgGCACCCTCTGTTCGGCCGGAAtgtccctctgtccagtgggtcAGGCTTTGTGATGTCAGACACAGGTTTGATAGTGACCAACGCCCATGTAGTCTCCAGCGCCAGGCCTGTGTCGGGCCGTCAGCAGCTCAAGGTCCAGATGCACAATGGTGACGTCTACGAAGCGACCATCAAGGACATCGATAAGAAGTCAGACATCGCCACCATCAAAGTCAACCCACTGaAAAAGCTCCCGGTGCTGTTGCTAGGCCACTCGGCCGACCTTAGACCTGGTGAGTTTGTGGTTGCCATTGGCAGCCCCTTCGCTCTCCAGAATACGGTTACCACAGGGATCGTGAGCACTGCACAGAGAGACGGGAAGGAGCTGGGCATCAGAGACTCTGACATGGACTATATACAGACGGACGCCATCATCAACTATGGAAATTCAGGCGGACCTCTAGTTAACTTGGACGGGGAGGTGATTGGCATCAACACTCTGAAAGTGGCTGCTGGGATCTCCTTCGCCATCCCTTCTGATAGGATCACACGCTTCCTCAAGGAATCAATGGACAAGCAGAGCAAAGAAGTGAGATCATTGAAGAAACGGTTCATTGGAATAAGGATGCTCACCATCAACCCAGCGCTGGTTGAGGAGCTGAAGCAGCAGAACCCAGACTTCCCTGATGTCTCTAGTGGGATCTACGTCCATGAAGTGGTGCCTCACTCTCCTGCACAGAAAGGTGGTATCCGAGACGGTGACATCATCGTGAAGCTGAACGGCCGTCCTCTGCTGACCACAGCTGATCTACAAGGGGCGCTCACGGAGGAGACAGCCCTGCTGCTGGAGGTCAGGAGGGGCAACGACGACCTGCTCTTCAACATCCAGCCTGATGTCATTATGCAGTAACCCAGTAACCATGAAGACATTGACCAGGAGTACTGTATTCAAGATATATTTCTATCGGACCGTTCTGTAAACGTTAGAACGTCACTCATGAACATGCTCCCAGCTGTTCAACATCGAGCCAGACGACGTCTTCATGCAGTAATCACAGCAACCGTGGTGTGGAACCCGTGAGACTGAAAAAGTATactgaccaaacaaaacaaaacaaaaactctGGTTGAGAGCCCTATACACTGATAAAGCTGCCCCTATAGTCACTGACCTAAGATCAGTTTGTATTTGTTTTGGGAGGGTAAAACTGATCCTAACTCGGTGCCTAAAGGGTGACTTTTAACTACTCCGAGCCAAGGGGAGAACGATCAACAAACAAGTCAAGAAACAGAAAACTGTGTTTGTTGGAACCTTGATCTGGAAACAACAGAGACTGACTGACCCTTGCTTGGTAAATCCAGCCAGAAAACTCTCTGGGGTCTGGATGCATTTAGGACTGAATGTTGGAACGCCCAGTGAAATGAAACACTTGATTTTTAGTATTGTTGTATTTGTGTTTTGCATCATCTGTCTTTGTCAAAGCATACCAGCTGTTTTTTGAGACCCACTTACTCCCAATGCAACTGATCATTGGTAAGACAAGTTTAGCATGTAGTTTAATTCAAAGATTTGTCCATTGTTACACTGCTTTTATGGCCTTTTTAAAAAATCTGTTGAACAGAACTTATTTCTGTACATGCGAGTACAGTAGCTATGTGTCCAATGCTTTCCGTTTGAAACCATTCCATAATCAACTGTTAATGTTGTTTTTGGGTCAGTTATACTTTAAAAGAAAGACCAGAATTTGGTCAGAAATGTTCAGTTAGAAGTTGAAAGAAAGACCACATTTTTATTCAACTGGTAAAATGTAAGCAAATGTCTGTTTGAATCTCACTGTTACTGGATTCTTGATGTCTTCTACTATAACCGACCCATtgggaacactttacattaatgTCCTAAGGGTTTATAAAGGGTTTGTAAAGGTGCTATAAGCAGTTTTATAAACACTTTACAACATTGACCTGTGCTTATAGCATGAATAAATAAATTCCCTTTACAGTCAGTTACTTATATCTTAATCATCATGACTTAAGAACAGACTGAATGTTTACAAATCTGGATTCCTTACCAACAGGCTATGTCAATGGGAGTGATTGTTTTAGTTTTTGCTACTTTATGTAATGTGtataaaatcaaataaattgCTGTGTAGGACGTTCTTGCATTAGATCCAGTGA
>XM_021577715.2
GCTCCGCCTCCTGGGGTCGCGTTTTTATTGTCAACGACCTCCTACTTTGCGGAGCTACTTTGGCTTAGTTTATTAATTCGACGATTttaaaaacaagcacacataaaacttgaaaaagACAAATAAAACCATCGaagataacacacaataaagtctgggattTATTTCCATTGTTGTCCTCTTGTGACATGGTGGTTGGTCAAGATCACTTGCGCTTTGGAGGGGCAGAGCCAGACCAGACGCAACGAATGATATTGGATCTTCAAAAAACTGAAAAAACAAAAGGCACAGCACGGCTGTGCTGAGACTCATTGGTGTTCATTGCAAATATAGCGCCAGCCAGTGCATCGGTTAGACGCACAATAACGGCATATTTGGGATCAGTTTCCACTACTTTGGGATAACGTTTCCCATTTAATCTGGATCAACAACGGGCGGCTGCATATGAGTTGAGAAGTTttcagttttaagaaaatcccGGATGTCTTCCCTGCAAGCGTAATTTTATATCGACAGTCTTGTGAAAGAGATGCGTAAAAGTGTGGAGTGTTGCTCGTTGTTCAATCTTCCCAAATTACCGGCGACCGTTTTACCACGAACATGACCGTGTAAATACTTAGCCTAatattatttgttattattttatagTTTTTATTTTCTCATATCTCCACTGCACTTGATCGCAAACGATGCAGGTCCTACTGTTTGCTACGGTTCTTTACTATATCGTGAACTTCGTCGGGGCTGAGCCCAAACCAAAATGCTCAGAGCGGTGCGACGTGAGCACTTGCCCCAGCCCTAGCTGCGCGATGGGGTACGTTCCAGACCGATGCAACTGCTGCCTGGTTTGCGCCCAGGGAGAAAGCGACCCATGCGGGCGTAAAGATGACCTACCCTGTGGTGATGGACTCGAATGCAAGCACCCGGCCGGAAAGCGGCTAGCCAAGGGCTTTTGTCAGTGCAAGTTGGGTCACAAAGTTTGCGGCAGTGACGGCGTTACCTATGGGAACGTGTGTCAGCTGAAGGCGCAGAGTAGGAAGGCTCTGCAGCAAGGGCTGCCTGCCGTCACCTCCGTCCAGAAGGGACCATGCGAAATCAACAATAACAAAGGTACTTCACACCCCACCAGTCCCAGGTACAAGTTTAACTTCATAGCTGACGTGGTTGAGAAGATTGCGCCGGCTGTTGTCCACATTGAACTTTTCCTCAgGCACCCTCTGTTCGGCCGGAAtgtccctctgtccagtgggtcAGGCTTTGTGATGTCAGACACAGGTTTGATAGTGACCAACGCCCATGTAGTCTCCAGCGCCAGGCCTGTGTCGGGCCGTCAGCAGCTCAAGGTCCAGATGCACAATGGTGACGTCTACGAAGCGACCATCAAGGACATCGATAAGAAGTCAGACATCGCCACCATCAAAGTCAACCCACTGaAAAAGCTCCCGGTGCTGTTGCTAGGCCACTCGGCCGACCTTAGACCTGGTGAGTTTGTGGTTGCCATTGGCAGCCCCTTCGCTCTCCAGAATACGGTTACCACAGGGATCGTGAGCACTGCACAGAGAGACGGGAAGGAGCTGGGCATCAGAGACTCTGACATGGACTATATACAGACGGACGCCATCATCAACTATGGAAATTCAGGCGGACCTCTAGTTAACTTGGACGGGGAGGTGATCGGTATCAGTTGTGATCCAGTTCCTATTCGTAACACTCTGTTAAGTTGTTTGTCTGACTGCCACCAGGACGGGGAGGTGATTGGCATCAACACTCTGAAAGTGGCTGCTGGGATCTCCTTCGCCATCCCTTCTGATAGGATCACACGCTTCCTCAAGGAATCAATGGACAAGCAGAGCAAAGAAGTGAGATCATTGAAGAAACGGTTCATTGGAATAAGGATGCTCACCATCAACCCAGCGCTGGTTGAGGAGCTGAAGCAGCAGAACCCAGACTTCCCTGATGTCTCTAGTGGGATCTACGTCCATGAAGTGGTGCCTCACTCTCCTGCACAGAAAGGTGGTATCCGAGACGGTGACATCATCGTGAAGCTGAACGGCCGTCCTCTGCTGACCACAGCTGATCTACAAGGGGCGCTCACGGAGGAGACAGCCCTGCTGCTGGAGGTCAGGAGGGGCAACGACGACCTGCTCTTCAACATCCAGCCTGATGTCATTATGCAGTAACCCAGTAACCATGAAGACATTGACCAGGAGTACTGTATTCAAGATATATTTCTATCGGACCGTTCTGTAAACGTTAGAACGTCACTCATGAACATGCTCCCAGCTGTTCAACATCGAGCCAGACGACGTCTTCATGCAGTAATCACAGCAACCGTGGTGTGGAACCCGTGAGACTGAAAAAGTATactgaccaaacaaaacaaaacaaaaactctGGTTGAGAGCCCTATACACTGATAAAGCTGCCCCTATAGTCACTGACCTAAGATCAGTTTGTATTTGTTTTGGGAGGGTAAAACTGATCCTAACTCGGTGCCTAAAGGGTGACTTTTAACTACTCCGAGCCAAGGGGAGAACGATCAACAAACAAGTCAAGAAACAGAAAACTGTGTTTGTTGGAACCTTGATCTGGAAACAACAGAGACTGACTGACCCTTGCTTGGTAAATCCAGCCAGAAAACTCTCTGGGGTCTGGATGCATTTAGGACTGAATGTTGGAACGCCCAGTGAAATGAAACACTTGATTTTTAGTATTGTTGTATTTGTGTTTTGCATCATCTGTCTTTGTCAAAGCATACCAGCTGTTTTTTGAGACCCACTTACTCCCAATGCAACTGATCATTGGTAAGACAAGTTTAGCATGTAGTTTAATTCAAAGATTTGTCCATTGTTACACTGCTTTTATGGCCTTTTTAAAAAATCTGTTGAACAGAACTTATTTCTGTACATGCGAGTACAGTAGCTATGTGTCCAATGCTTTCCGTTTGAAACCATTCCATAATCAACTGTTAATGTTGTTTTTGGGTCAGTTATACTTTAAAAGAAAGACCAGAATTTGGTCAGAAATGTTCAGTTAGAAGTTGAAAGAAAGACCACATTTTTATTCAACTGGTAAAATGTAAGCAAATGTCTGTTTGAATCTCACTGTTACTGGATTCTTGATGTCTTCTACTATAACCGACCCATtgggaacactttacattaatgTCCTAAGGGTTTATAAAGGGTTTGTAAAGGTGCTATAAGCAGTTTTATAAACACTTTACAACATTGACCTGTGCTTATAGCATGAATAAATAAATTCCCTTTACAGTCAGTTACTTATATCTTAATCATCATGACTTAAGAACAGACTGAATGTTTACAAATCTGGATTCCTTACCAACAGGCTATGTCAATGGGAGTGATTGTTTTAGTTTTTGCTACTTTATGTAATGTGtataaaatcaaataaattgCTGTGTAGGACGTTCTTGCATTAGATCCAGTGA
>XR_005038597.1
TGTCCAGGTTGTGTTGCTACTGACAACAACGTTAATTTCCAAGTCATGCATCTCAAGGTATGATGACAACGTTCATGCTAGATATGGTAAAGAGTAGACCGAAGAGTTATGCGTGGTCAAGAGGGTCCAACGCTCCGCCTCCTGGGGTCGCGTTTTTATTGTCAACGACCTCCTACTTTGCGGAGCTACTTTGGCTTAGTTTATTAATTCGACGATTttaaaaacaagcacacataaaacttgaaaaagACAAATAAAACCATCGaagataacacacaataaagtctgggattTATTTCCATTGTTGTCCTCTTGTGACATGGTGGTTGGTCAAGATCACTTGCGCTTTGGAGGGGCAGAGCCAGACCAGACGCAACGAATGATATTGGATCTTCAAAAAACTGAAAAAACAAAAGGCACAGCACGGCTGTGCTGAGACTCATTGGTGTTCATTGCAAATATAGCGCCAGCCAGTGCATCGGTTAGACGCACAATAACGGCATATTTGGGATCAGTTTCCACTACTTTGGGATAACGTTTCCCATTTAATCTGGATCAACAACGGGCGGCTGCATATGAGTTGAGAAGTTttcagttttaagaaaatcccGGATGTCTTCCCTGCAAGCGTAATTTTATATCGACAGTCTTGTGAAAGAGATGCGTAAAAGTGTGGAGTGTTGCTCGTTGTTCAATCTTCCCAAATTACCGGCGACCGTTTTACCACGAACATGACCGTGTAAATACTTAGCCTAatattatttgttattattttatagTTTTTATTTTCTCATATCTCCACTGCACTTGATCGCAAACGATGCAGGTCCTACTGTTTGCTACGGTTCTTTACTATATCGTGAACTTCGTCGGGGCTGAGCCCAAACCAAAATGCTCAGAGCGGTGCGACGTGAGCACTTGCCCCAGCCCTAGCTGCGCGATGGGGTACGTTCCAGACCGATGCAACTGCTGCCTGGTTTGCGCCCAGGGAGAAAGCGACCCATGCGGGCGTAAAGATGACCTACCCTGTGGTGATGGACTCGAATGCAAGCACCCGGCCGGAAAGCGGCTAGCCAAGGGCTTTTGTCAGTGCAAGTTGGGTCACAAAGTTTGCGGCAGTGACGGCGTTACCTATGGGAACGTGTGTCAGCTGAAGGCGCAGAGTAGGAAGGCTCTGCAGCAAGGGCTGCCTGCCGTCACCTCCGTCCAGAAGGGACCATGCGAAATCAACAATAACAAAGGTACTTCACACCCCACCAGTCCCAGGTACAAGTTTAACTTCATAGCTGACGTGGTTGAGAAGATTGCGCCGGCTGTTGTCCACATTGAACTTTTCCTCAgGCACCCTCTGTTCGGCCGGAAtgtccctctgtccagtgggtcAGGCTTTGTGATGTCAGACACAGGTTTGATAGTGACCAACGCCCATGTAGTCTCCAGCGCCAGGCCTGTGTCGGGCCGTCAGCAGCTCAAGGTCCAGATGCACAATGGTGACGTCTACGAAGCGACCATCAAGGACATCGATAAGAAGTCAGACATCGCCACCATCAAAGTCAACCCACTGaAAAAGCTCCCGGTGCTGTTGCTAGGCCACTCGGCCGACCTTAGACCTGGTGAGTTTGTGGTTGCCATTGGCAGCCCCTTCGCTCTCCAGAATACGGTTACCACAGGGATCGTGAGCACTGCACAGAGAGACGGGAAGGAGCTGGGCATCAGAGACTCTGACATGGACTATATACAGACGGACGCCATCATCAACTATGGAAATTCAGGCGGACCTCTAGTTAACTTGGACGGGGAGGTGATCGGTATCAGTTGTGATCCAGTTCCTATTCGTAACACTCTGTTAAGTTGTTTGTCTGACTGCCACCAGGACGGGGAGGTGATTGGCATCAACACTCTGAAAGTGGCTGCTGGGATCTCCTTCGCCATCCCTTCTGATAGGATCACACGCTTCCTCAAGGAATCAATGGACAAGCAGAGCAAAGGTAGGCCCGCACCTCCCCTCTGATAGGACAACACTCTTCCTCAATGAATCAATGGACAAGCAGAGCAAAGAAGTGAGATCATTGAAGAAACGGTTCATTGGAATAAGGATGCTCACCATCAACCCAGCGCTGGTTGAGGAGCTGAAGCAGCAGAACCCAGACTTCCCTGATGTCTCTAGTGGGATCTACGTCCATGAAGT

Function

symbol description
htra3 Enables endopeptidase activity; identical protein binding activity; and serine-type peptidase activity. Involved in proteolysis. Predicted to be located in extracellular region.

NR:

description
PREDICTED: serine protease HTRA3 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021577716.2 False 3351 mRNA 0.45 9 39731630 39745300
XM_021577715.2 False 3451 mRNA 0.45 9 39731630 39745319
XR_005038597.1 True 2188 mRNA 0.49 8 39733342 39745450
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110500379 LOC106608956 coding downstream 57750 39656563 ~ 39673880 (-)
LOC110500376 LOC106608954 coding downstream 76217 39645731 ~ 39655413 (-)
LOC118943026 NA coding downstream 79576 39651912 ~ 39652054 (-)
LOC118943027 NA coding downstream 81274 39650221 ~ 39650356 (-)
LOC118943025 NA coding downstream 83695 39647689 ~ 39652846 (-)
LOC110500381 sh3tc1 coding upstream 4391 39749841 ~ 39769977 (-)
tdrd7b LOC106608959 coding upstream 35147 39780597 ~ 39811576 (-)
fam113 LOC106608962 coding upstream 111120 39856570 ~ 39872205 (-)
rpgrip1 LOC106608963 coding upstream 126918 39872368 ~ 39883855 (-)
LOC110500390 LOC106608964 coding upstream 142120 39887570 ~ 39891825 (-)
G1737166 NA non-coding downstream 14863 39716167 ~ 39716767 (-)
G1737136 acox3 non-coding downstream 34720 39696420 ~ 39696910 (-)
G1737127 NA non-coding downstream 56409 39674571 ~ 39675221 (-)
G1737072 NA non-coding downstream 88078 39642146 ~ 39643552 (-)
G1737197 NA non-coding upstream 77090 39822540 ~ 39831336 (-)
G1737201 LOC107376939 non-coding upstream 91718 39837168 ~ 39837507 (-)
G1737240 NA non-coding upstream 120581 39866031 ~ 39866454 (-)
G1737243 LOC106608967 non-coding upstream 134447 39879897 ~ 39959260 (-)
G1737540 NA non-coding upstream 252627 39998077 ~ 39998362 (-)
LOC110500374 LOC106609020 other downstream 152590 39571290 ~ 39579548 (-)
LOC110500353 NA other downstream 788560 38934413 ~ 38943112 (-)
G1735742 NA other downstream 1203811 38527292 ~ 38527819 (-)
G1735740 NA other downstream 1204891 38526383 ~ 38526739 (-)
G1735425 NA other downstream 1535258 38195980 ~ 38196372 (-)
G1737209 NA other upstream 32506 39777956 ~ 39778850 (-)
LOC110500404 pea15 other upstream 475030 40220480 ~ 40285714 (-)
G1737718 NA other upstream 525368 40270818 ~ 40379678 (-)
G1738361 NA other upstream 752848 40493727 ~ 40514635 (-)
G1738532 LOC100380853 other upstream 1164404 40909854 ~ 40910618 (-)

Expression

LOC110500380(htra3) Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 8.
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LOC110500380(htra3) Expression in each Bioproject

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LOC110500380(htra3) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 400.
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Co-expression Network