Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110500390 |
| gene name | LOC106608964 |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048585.1 |
| NCBI id | CM023239.2 |
| chromosome length | 64935962 |
| location | 39887570 ~ 39891825 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| E3 ubiquitin-protein ligase TRIM39-like |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_021577735.2 | False | 2981 | mRNA | 0.44 | 7 | 39887570 | 39891689 |
| XM_021577734.2 | True | 2503 | mRNA | 0.46 | 8 | 39887572 | 39891825 |
39,882,000
39,883,000
39,884,000
39,885,000
39,886,000
39,887,000
39,888,000
39,888,000
39,889,000
39,890,000
39,891,000
39,892,000
39,893,000
39,894,000
NC_048585.1
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| rpgrip1 | LOC106608963 | coding | downstream | 3715 | 39872368 ~ 39883855 (-) |
| fam113 | LOC106608962 | coding | downstream | 15365 | 39856570 ~ 39872205 (-) |
| tdrd7b | LOC106608959 | coding | downstream | 75994 | 39780597 ~ 39811576 (-) |
| LOC110500381 | sh3tc1 | coding | downstream | 117593 | 39749841 ~ 39769977 (-) |
| LOC110500380 | htra3 | coding | downstream | 142120 | 39731630 ~ 39745450 (-) |
| LOC110500391 | LOC106608965 | coding | upstream | 29904 | 39921729 ~ 39931768 (-) |
| LOC110500402 | LOC106608975 | coding | upstream | 310245 | 40202070 ~ 40210631 (-) |
| LOC110500404 | pea15 | coding | upstream | 337183 | 40220480 ~ 40285714 (-) |
| LOC110500406 | LOC106609022 | coding | upstream | 468176 | 40360001 ~ 40362245 (-) |
| LOC110500407 | LOC106608979 | coding | upstream | 493546 | 40385371 ~ 40393305 (-) |
| G1737240 | NA | non-coding | downstream | 21116 | 39866031 ~ 39866454 (-) |
| G1737201 | LOC107376939 | non-coding | downstream | 50063 | 39837168 ~ 39837507 (-) |
| G1737197 | NA | non-coding | downstream | 56234 | 39822540 ~ 39831336 (-) |
| G1737166 | NA | non-coding | downstream | 170803 | 39716167 ~ 39716767 (-) |
| G1737136 | acox3 | non-coding | downstream | 190660 | 39696420 ~ 39696910 (-) |
| G1737540 | NA | non-coding | upstream | 106252 | 39998077 ~ 39998362 (-) |
| G1737541 | NA | non-coding | upstream | 107038 | 39998863 ~ 39999101 (-) |
| G1737542 | NA | non-coding | upstream | 107717 | 39999542 ~ 39999762 (-) |
| G1737544 | NA | non-coding | upstream | 109590 | 40001415 ~ 40001642 (-) |
| G1737545 | NA | non-coding | upstream | 109933 | 40001758 ~ 40002033 (-) |
| G1737209 | NA | other | downstream | 108720 | 39777956 ~ 39778850 (-) |
| LOC110500374 | LOC106609020 | other | downstream | 308530 | 39571290 ~ 39579548 (-) |
| LOC110500353 | NA | other | downstream | 944500 | 38934413 ~ 38943112 (-) |
| G1735742 | NA | other | downstream | 1359751 | 38527292 ~ 38527819 (-) |
| G1735740 | NA | other | downstream | 1360831 | 38526383 ~ 38526739 (-) |
| G1737718 | NA | other | upstream | 378993 | 40270818 ~ 40379678 (-) |
| G1738361 | NA | other | upstream | 606473 | 40493727 ~ 40514635 (-) |
| G1738532 | LOC100380853 | other | upstream | 1018029 | 40909854 ~ 40910618 (-) |
| G1738673 | NA | other | upstream | 1270295 | 41162120 ~ 41162803 (-) |
