LOC110500392 (LOC106608967)


Basic Information

Item Value
gene id LOC110500392
gene name LOC106608967
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 39953279 ~ 39959230 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021577738.2
aggaaggagagaaagggaagagaggggggagaggtgtgagagtgggtgagtgagtgtgtgagagagaggtggggagggggagagaaagtgtgagtgagagaaaaagaaagggagagagagagggagagggagtcggtgaaaatagagagaaaagagacagagaaaggggaatCTGCCTCTTGGGACAGAGTAACTTCCACGTCGATACAGGAAATATACTAATCGTAAAAGAGTCAAGGTTGGCCTGTGAAAAACCACCTGACCAACTCCACTGAGACTTGTATTACAAATCTTCTAAAACAGGTCGGGAACCTGGACAAACTTGGCCGTACCTGCAGGAGGTTTGGGTCGTGGCCCAAAGGTGGGTTTCAAGTGATCGGGCATACAACATCCACCATTCAGATTCAGTGGGTTTGGATCAATTGACCATCTGGGATTCAACCTTTCAGAGCCAACTGAAGATTCCGGAAGGATTTAAACTGTGGTCTAGCTGATTACCGTGTGGTTTAGACAAGACTGAAAAGACAGACATTGGTTTACTGAAATTTGTCTAGTATTCACAAATGATTGTTTCTTTCTACTGAAACTGTGTGGGAAACTGACATTTCCAACTGTGTCAAAATTGAAAAACCAACATCCAAAGAACACCCAAGACCTTACAACCATTTGAGACAATATGCAACGCCTTCCTCTTCCTTGTTCATCTTTGCCCCACCCCATAATAACACTTAACCACGCCCTGTTCCTTGGACTAATTTTAATCCTCCAATGGGGTCCCCTGGGGGCCAGAGCTCAGAATGACACTGAGCCAATCGTGTTGGAGGGGAAGTGTCTGGTGGTTTGTGACTCCACCCCGTCGTCGGAACCGTCGGGTAACGCGTTGGGGATGTCGGTGCGGTCAGGGGCCGGTCGAGTGGCGTTCTCCGCTGTCCGGAACACTAACCACGAACCCTCTGAGATGAGCAACCGTACCATGACCATCTACTTTGACCAGATCCTGGTGAATGTGGGCAGCCATTTTGACCCAGCACGCAGCATCTTTGTGGCTCCCAGAAAAGGAGTCTTCAGTTTCTGCTTCCATGTGGTCAAAGTATACAACCGACAGACAATACAGgtgagtcTGGTATTGAACGGACACCCGGTGATTTCAGCATTCGCCGGGGACCAGGACGTGACCAGGGAAGCAGCCACCAACGCTgggttggttaccatggagagaggagacaaggcTTATCTCAAACTGGAGAGAGGGAACCTGATGGGGGGATGGAAATACTCCACCTTCTCTGGGTTTCTGGTGTTTCCTTtgtagagagtgaaagagggagggagagtaaaagagaaaaagagagagggtcaggggAAAGGCAAGCAAGGTGACACAGGGTAGACATCAAGTAAGGACACAGCTAGGGTTAGGAGGACGAGTGTGTATGTATGAGAGCTACAACTCGCTTTGTATCTGGAAAATCCTGAATGCTACGATTTTTGAATGCACTTTTAAATACACTGCTCCATTATTTAAATGATACTGTAGTGTGTCCAGTTTATGCTTGAATATTCATGTAATATGTGTTGGCTTTTGTTGTCTGCATGCAAATAATTGTACGTGCTAATAAAAAGGTTTGGTCATACAGTAAA
>XM_021577739.2
agtgagagaaaaagaaagggagagagagagggagagggagtcggtgaaaatagagagaaaagagacagagaaaggggaatCTGCCTCTTGGGACAGAGTAACTTCCACGTCGATACAGGAAATATACTAATCGTAAAAGGTCGGGAACCTGGACAAACTTGGCCGTACCTGCAGGAGGTTTGGGTCGTGGCCCAAAGGTGGGTTTCAAGTGATCGGGCATACAACATCCACCATTCAGATTCAGTGGGTTTGGATCAATTGACCATCTGGGATTCAACCTTTCAGAGCCAACTGAAGATTCCGGAAGGATTTAAACTGTGGTCTAGCTGATTACCGTGTGGTTTAGACAAGACTGAAAAGACAGACATTGGTTTACTGAAATTTGTCTAGTATTCACAAATGATTGTTTCTTTCTACTGAAACTGTGTGGGAAACTGACATTTCCAACTGTGTCAAAATTGAAAAACCAACATCCAAAGAACACCCAAGACCTTACAACCATTTGAGACAATATGCAACGCCTTCCTCTTCCTTGTTCATCTTTGCCCCACCCCATAATAACACTTAACCACGCCCTGTTCCTTGGACTAATTTTAATCCTCCAATGGGGTCCCCTGGGGGCCAGAGCTCAGAATGACACTGAGCCAATCGTGTTGGAGGGGAAGTGTCTGGTGGTTTGTGACTCCACCCCGTCGTCGGAACCGTCGGGTAACGCGTTGGGGATGTCGGTGCGGTCAGGGGCCGGTCGAGTGGCGTTCTCCGCTGTCCGGAACACTAACCACGAACCCTCTGAGATGAGCAACCGTACCATGACCATCTACTTTGACCAGATCCTGGTGAATGTGGGCAGCCATTTTGACCCAGCACGCAGCATCTTTGTGGCTCCCAGAAAAGGAGTCTTCAGTTTCTGCTTCCATGTGGTCAAAGTATACAACCGACAGACAATACAGgtgagtcTGGTATTGAACGGACACCCGGTGATTTCAGCATTCGCCGGGGACCAGGACGTGACCAGGGAAGCAGCCACCAACGCTgggttggttaccatggagagaggagacaaggcTTATCTCAAACTGGAGAGAGGGAACCTGATGGGGGGATGGAAATACTCCACCTTCTCTGGGTTTCTGGTGTTTCCTTtgtagagagtgaaagagggagggagagtaaaagagaaaaagagagagggtcaggggAAAGGCAAGCAAGGTGACACAGGGTAGACATCAAGTAAGGACACAGCTAGGGTTAGGAGGACGAGTGTGTATGTATGAGAGCTACAACTCGCTTTGTATCTGGAAAATCCTGAATGCTACGATTTTTGAATGCACTTTTAAATACACTGCTCCATTATTTAAATGATACTGTAGTGTGTCCAGTTTATGCTTGAATATTCATGTAATATGTGTTGGCTTTTGTTGTCTGCATGCAAATAATTGTACGTGCTAATAAAAAGGTTTGGTCATACAGTAAA

Function

NR:

description
cerebellin-1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021577738.2 False 1641 mRNA 0.47 4 39953279 39959230
XM_021577739.2 True 1477 mRNA 0.47 4 39953371 39959230

Neighbor

gene id symbol gene type direction distance location
LOC110500831 NA coding upstream 478 39945263 ~ 39952801 (+)
LOC110500384 LOC106608960 coding upstream 96774 39828322 ~ 39856505 (+)
acox3 acox3 coding upstream 247077 39673972 ~ 39706202 (+)
mpdu1b LOC106608952 coding upstream 352964 39595167 ~ 39600315 (+)
trnaw-cca-56 NA coding upstream 382552 39570656 ~ 39570727 (+)
LOC110500393 LOC106608968 coding downstream 13089 39972319 ~ 39997941 (+)
LOC110500394 LOC106608969 coding downstream 43668 40002898 ~ 40050645 (+)
tmm85 emc4 coding downstream 94651 40053881 ~ 40060698 (+)
LOC110500395 plcg coding downstream 126956 40086186 ~ 40102011 (+)
LOC110500396 NA coding downstream 153746 40112976 ~ 40116217 (+)
G1736473 NA non-coding upstream 94360 39858619 ~ 39858919 (+)
G1736434 NA non-coding upstream 110317 39776431 ~ 39842962 (+)
G1736377 NA non-coding upstream 248143 39704608 ~ 39705136 (+)
G1736209 NA non-coding upstream 502101 39450860 ~ 39451178 (+)
G1736154 ap1s1 non-coding upstream 590322 39340638 ~ 39362957 (+)
G1737283 NA non-coding downstream 844 39960074 ~ 39960286 (+)
G1737306 NA non-coding downstream 19506 39978736 ~ 39986609 (+)
G1737310 NA non-coding downstream 40185 39999415 ~ 39999762 (+)
G1737344 NA non-coding downstream 92219 40051449 ~ 40051766 (+)
G1737345 NA non-coding downstream 93536 40052766 ~ 40053023 (+)
G1736484 LOC106608963 other upstream 76329 39875756 ~ 39876950 (+)
G1736098 NA other upstream 663609 39233664 ~ 39289670 (+)
nat16 LOC106608942 other upstream 743794 39179147 ~ 39211035 (+)
arrb2b LOC106608931 other upstream 1028351 38867935 ~ 38939119 (+)
LOC110500301 LOC106609063 other upstream 1871005 38076983 ~ 38083972 (+)
G1737353 NA other downstream 103476 40062706 ~ 40063325 (+)
LOC110500409 LOC106599480 other downstream 442274 40401452 ~ 40404840 (+)
G1737866 LOC103384823 other downstream 592781 40552011 ~ 40553853 (+)
G1738057 LOC100194703 other downstream 1033925 40955050 ~ 40997320 (+)
G1738119 NA other downstream 1065480 41024710 ~ 41029136 (+)

Expression


Co-expression Network