LOC110500393 (LOC106608968)


Basic Information

Item Value
gene id LOC110500393
gene name LOC106608968
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 39972319 ~ 39997941 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005038599.1
ATGTGACTGGCAAGAGATAGGAGTTGAGTTGGCTTTATGAATGTCGCAGATACTCTAGCATTTACGTTGTTGTGTCTATTGTTTCGTTTTGAAGACCACACAAGTTCAGACAGAAACTCAAATGTTGTTCAATTGACACTTTATCTCGTTTTATTTTACCAACGGCTACTGTCGGTCTGGCACATCGTTTTTTGATCTTACGTGAGTTCTGACACAACCCCCATTCCCATGGCCTCTGCCCTGAGCCATCTCTCTCCAATGTCtggaatagagagagaaggatggagtgatggaggaggagaggaccggGTGGAGGATGAGTTTGCGTGTTCCGGCGCGCTACGCGGAGCCCTACTGTCCTTCCACCCCTCCCTGGAGAGGATATTTGGGGTGTCCTTTATGAtcgggagagaggaggatgctgTGTTGCCACATGATGGACAAATCTGGCTTAAACTAAGAGGAGGAAGGAACGACGTTGTGGCTGCCAAATTGTTTGTTAAGGGAGTTGTGAACCAGGAGGCCCCGCAGGAAGTTCCGTATCCAGGGGTCCTTCACTGTGTGTTCTGTGGAGCACGGGGGCTGTTCATGGACTGCCTGATCAGAAACACCTCTGCTCGCATAGTGGTGGTTTCCCCAGGCTTCCTGCTCATCTCAGGTCTGGCAGAACCAGTGGTCAGGGCCTACTCCCTGATCACAGACCTTGTGGAGCGCTCCAAGGGCACCCAGGGACGACTCAGCGAGCCTAGGGACAGGGAAGCAGGCGAGACCCTGGATTCTCGTCGGGCCTTCAAGTCCCTGGTGGAGAGATGGGATGACAAGCACACTCTGGACCTGCTAGTGCTACCGGGAGCAGTGAAGGAGACTTTACTGGATCTGGTGAGGGAATCTGGGCTGGGATCTAACCCTGGTCCCGGGGGCTTGAACCCGGGTCATGGGGGTTCAAACCCAAGTCATGGGTGTTTAAATCCTGGTCCAGGGCTGGGCTCAAACCCCATTCCAGGGCTGGGCTTGAACCTTGGTCTTGGGGGGTCTAGAGACAGAGTGGGTCTAATGGACACTGATACACAGAGACTATGGGACAGCCAATTCGAATTAGAGGCACTAACACAGGAAGTACAGGGGATTTCAATGACCAAATCAACGACCAAACCTTCCGAACATTCCTACCACAACCAAGACCCTGGTCTACGGAATATTGGACTGTTTTCTCAACAGACGTTCACTACCGCAACTGTAAAAGTTACAGAGGGAAGCGGATATGGAACACAAGGAGGGATAGGGATTGGGAACGAAGCAGCCCCCCAAGATCCCATCTTCCACTCTTTCCCCCAAAACGAAGACATTCGTGGTCGAGCCGAGGGGTCGGAGGGGGCAAAAGAGGTACAAGGGCGTTCCCCACAGGAGGTAAAGGAGGAGCGACacctggaagaggaggaggagatagagacagaggagggagaagggaacaTGTTGTCAGTAGGGAGCAAGGAGGAGTTTGGCCTGCTTCTGAAGTTCTTCACGGCTATGGGCTATGCGGAAGACGTGGTACTGAGGGTCCTagcccagaccagacccagagaAGCTTCCCAGATCCTGGACCTGGTGCAACAAGAGCAGGACCGGACCAGACTGGCCATGAACAGCCTTGTGGAGCTAGCgcatagagaggtggaggagaggggaagcgAGGGGGAGGAGAGCGGAGGTGAAGAAGTGACAGGAAAGAGAAGCGGTATAGATAAAagagtggagatggagggaggcgtgggagaaggggtgagggCTAGAGAAGAgcaaagagaggagaaggaaagagggggggggAGTGCAGGATTGTCTGATGATTTGTCCAAGGATTCAACAGAGGTAGAcagggggagaggtgaggggggcaGGGAGAGTGATGAAGGGAACAGtaagggaggagaggtggggaacGAGGATGATTTTGTACTGGGGGTGCTGAAGAGGGCTGCGGCCAACTGTGGGTACACAGAGGAGAAGGTAACagaagtatacagtatgttacctgAACTGTCCATACGTCAGCTACTCCTGGAGCTACAGAGAGAGGGCACCAGAGAGACAGAAGCCAAATCCCAGGACAGGGTACGTGACGAACCAAGAGAGGTGAATGAGGTTGTCTCAGAGGTACGGAAAAAGAAGTGCAGAAAAGAGGaaacggagaaggagaggggtaaagagaggaAGGCACCGGCACAACCATTCACAACTACTGAAAACCGAGGAGTAGAAAGGAAGAGTGCCAAAGGAATGAGTGAAAGGAAGGCGGATGAGGTAGGAGGAGTGAAGGTGCCAAACCGAACCGTTGATGGCccagttagggttgaaccggatCTGGCTCAGTGGAATGCTGTGATGAACCAGGTTCCGTTCCCGACCCATGGTCTCCAGAAGAACCCCACACAGACACGACAGCAACCCGGCCAGACACACCCTCCCCGTCGAGCCAGCCCCCCTTTAGTCAGAGGGCCTCCCCAGCCCACCTACCCCATCACACTACCTCCACAACCCACCAACCTTCCCTTATTTCCCCATCAACTTGTTTACCCTCTCACCCAGCCACATCAGACCACCTTAGACTCCGCCCTCACCGTGAATAACTCCTCAGCAACCAGAGTGAAGGAGAAACGGGGTTTCCTTACCCTAGCAACAGAGGTTCCAGAAAGAAAGGGTCTCCCTGCCCCGGCTGTTGAAAGATGGGGTCTCCCGCCCATGGCAGCAGGGTCTTTAGTGACCGGGCAGCAGCGCTTCCTGGAAGGACTACAGACGCCATTTGACCTCAAGCTGACTGACCAACCAGGAGACCCAGGGCTCAGGATGGTGGTCATCGACGGGAGCAATGTTGCCATGAGTCACGGTCTGGGTAATTTCTTCTCGTGTCGAGGAATCGCCCTGGCCGTGCAACACTTCTGGAACCGCGGCCATCGCAGAATCAGCACCTTCCTGCCCCAGTGGAGGCAGAAGAGAGACCCCCGGGTCAAAGAGCAGCACTACCTTACTGAGCTCCAGAACCTGGGTCTCCTGTCCTACACCCCctccagagaggtccaggggaAGAGGATAAACTCATACGATGACAGGTTCatgctgcagctggcccagaagaCAGATGGCGTGATCGTGACAAATGACAACCTTAGAGACCTGCTGGATGAGTCCCATGAATGGAGAGACATCATCAAGAAAAGaCTTTCCCCATCAAGTTTCATACATTGTGTCTTTGCATTATCCGACTCCTCCAGTACACGTTTGTAGGTGATCACTTCATGGTGCCTGATGACCCGCTGGGCCGAGAAGGACCCCATCTGGATGACTTCCTACGCTCACTGCACAGggctccTGTCTCAGGCAGTCACTCATTTGCGGGCATTGCCTCCACCCCCTTCCCCCAAGCTCCCAGGGCCCAGACAGAGGTCCTGAAGTTCAGGGACAGAACACCTGGTGTAGCTGTAGAGCCAGAGTCCAGGCAGGCCCG
>XM_036957810.1
TGTGACTGGCAAGAGATAGGAGTTGAGTTGGCTTTATGAATGTCGCAGATACTCTAGCATTTACGTTGTTGTGTCTATTGTTTCGTTTTGAAGACCACACAAGTTCAGACAGAAACTCAAATGTTGTTCAATTGACACTTTATCTCGTTTTATTTTACCAACGGCTACTGTCGGTCTGGCACATCGTTTTTTGATCTTACGTGAGTTCTGACACAACCCCCATTCCCATGGCCTCTGCCCTGAGCCATCTCTCTCCAATGTCtggaatagagagagaaggatggagtgatggaggaggagaggaccggGTGGAGGATGAGTTTGCGTGTTCCGGCGCGCTACGCGGAGCCCTACTGTCCTTCCACCCCTCCCTGGAGAGGATATTTGGGGTGTCCTTTATGAtcgggagagaggaggatgctgTGTTGCCACATGATGGACAAATCTGGCTTAAACTAAGAGGAGGAAGGAACGACGTTGTGGCTGCCAAATTGTTTGTTAAGGGAGTTGTGAACCAGGAGGCCCCGCAGGAAGTTCCGTATCCAGGGGTCCTTCACTGTGTGTTCTGTGGAGCACGGGGGCTGTTCATGGACTGCCTGATCAGAAACACCTCTGCTCGCATAGTGGTGGTTTCCCCAGGCTTCCTGCTCATCTCAGGTCTGGCAGAACCAGTGGTCAGGGCCTACTCCCTGATCACAGACCTTGTGGAGCGCTCCAAGGGCACCCAGGGACGACTCAGCGAGCCTAGGGACAGGGAAGCAGGCGAGACCCTGGATTCTCGTCGGGCCTTCAAGTCCCTGGTGGAGAGATGGGATGACAAGCACACTCTGGACCTGCTAGTGCTACCGGGAGCAGTGAAGGAGACTTTACTGGATCTGGTGAGGGAATCTGGGCTGGGATCTAACCCTGGTCCCGGGGGCTTGAACCCGGGTCATGGGGGTTCAAACCCAAGTCATGGGTGTTTAAATCCTGGTCCAGGGCTGGGCTCAAACCCCATTCCAGGGCTGGGCTTGAACCTTGGTCTTGGGGGGTCTAGAGACAGAGTGGGTCTAATGGACACTGATACACAGAGACTATGGGACAGCCAATTCGAATTAGAGGCACTAACACAGGAAGTACAGGGGATTTCAATGACCAAATCAACGACCAAACCTTCCGAACATTCCTACCACAACCAAGACCCTGGTCTACGGAATATTGGACTGTTTTCTCAACAGACGTTCACTACCGCAACTGTAAAAGTTACAGAGGGAAGCGGATATGGAACACAAGGAGGGATAGGGATTGGGAACGAAGCAGCCCCCCAAGATCCCATCTTCCACTCTTTCCCCCAAAACGAAGACATTCGTGGTCGAGCCGAGGGGTCGGAGGGGGCAAAAGAGGTACAAGGGCGTTCCCCACAGGAGGTAAAGGAGGAGCGACacctggaagaggaggaggagatagagacagaggagggagaagggaacaTGTTGTCAGTAGGGAGCAAGGAGGAGTTTGGCCTGCTTCTGAAGTTCTTCACGGCTATGGGCTATGCGGAAGACGTGGTACTGAGGGTCCTagcccagaccagacccagagaAGCTTCCCAGATCCTGGACCTGGTGCAACAAGAGCAGGACCGGACCAGACTGGCCATGAACAGCCTTGTGGAGCTAGCgcatagagaggtggaggagaggggaagcgAGGGGGAGGAGAGCGGAGGTGAAGAAGTGACAGGAAAGAGAAGCGGTATAGATAAAagagtggagatggagggaggcgtgggagaaggggtgagggCTAGAGAAGAgcaaagagaggagaaggaaagagggggggggAGTGCAGGATTGTCTGATGATTTGTCCAAGGATTCAACAGAGGTAGAcagggggagaggtgaggggggcaGGGAGAGTGATGAAGGGAACAGtaagggaggagaggtggggaacGAGGATGATTTTGTACTGGGGGTGCTGAAGAGGGCTGCGGCCAACTGTGGGTACACAGAGGAGAAGGTAACagaagtatacagtatgttacctgAACTGTCCATACGTCAGCTACTCCTGGAGCTACAGAGAGAGGGCACCAGAGAGACAGAAGCCAAATCCCAGGACAGGGTACGTGACGAACCAAGAGAGGTGAATGAGGTTGTCTCAGAGGTACGGAAAAAGAAGTGCAGAAAAGAGGaaacggagaaggagaggggtaaagagaggaAGGCACCGGCACAACCATTCACAACTACTGAAAACCGAGGAGTAGAAAGGAAGAGTGCCAAAGGAATGAGTGAAAGGAAGGCGGATGAGGTAGGAGGAGTGAAGGTGCCAAACCGAACCGTTGATGGCccagttagggttgaaccggatCTGGCTCAGTGGAATGCTGTGATGAACCAGGTTCCGTTCCCGACCCATGGTCTCCAGAAGAACCCCACACAGACACGACAGCAACCCGGCCAGACACACCCTCCCCGTCGAGCCAGCCCCCCTTTAGTCAGAGGGCCTCCCCAGCCCACCTACCCCATCACACTACCTCCACAACCCACCAACCTTCCCTTATTTCCCCATCAACTTGTTTACCCTCTCACCCAGCCACATCAGACCACCTTAGACTCCGCCCTCACCGTGAATAACTCCTCAGCAACCAGAGTGAAGGAGAAACGGGGTTTCCTTACCCTAGCAACAGAGGTTCCAGAAAGAAAGGGTCTCCCTGCCCCGGCTGTTGAAAGATGGGGTCTCCCGCCCATGGCAGCAGGGTCTTTAGTGACCGGGCAGCAGCGCTTCCTGGAAGGACTACAGACGCCATTTGACCTCAAGCTGACTGACCAACCAGGAGACCCAGGGCTCAGGATGGTGGTCATCGACGGGAGCAATGTTGCCATGAGTCACGGTCTGGGTAATTTCTTCTCGTGTCGAGGAATCGCCCTGGCCGTGCAACACTTCTGGAACCGCGGCCATCGCAGAATCAGCACCTTCCTGCCCCAGTGGAGGCAGAAGAGAGACCCCCGGGTCAAAGAGCAGCACTACCTTACTGAGCTCCAGAACCTGGGTCTCCTGTCCTACACCCCctccagagaggtccaggggaAGAGGATAAACTCATACGATGACAGGTTCatgctgcagctggcccagaagaCAGATGGCGTGATCGTGACAAATGACAACCTTAGAGACCTGCTGGATGAGTCCCATGAATGGAGAGACATCATCAAGAAAAGACTCCTCCAGTACACGTTTGTAGGTGATCACTTCATGGTGCCTGATGACCCGCTGGGCCGAGAAGGACCCCATCTGGATGACTTCCTACGCTCACTGCACAGggctccTGTCTCAGGCAGTCACTCATTTGCGGGCATTGCCTCCACCCCCTTCCCCCAAGCTCCCAGGGCCCAGACAGAGGTCCTGAAGTTCAGGGACAGAACACCTGGTGTAGCTGTAGAGCCAGAGTCCAGGCAGGCCCGCGACAGAGGGAAAAGGAAGGGGCAGGCTAAGGCTGGACACGGTAGCCCTGGAATGGACCTTGTTCCAGGGATGGGCCTTGGCCTGGATATGGAGAGGAGTGCAGCGGAGACCTCCAGACTTAGGGAGAGCTTATCCCAGGTGTTCCCAGGACAAGACAGCATTGTTACTCTGGTGCTGCAGTGTAACCCTACAGTGACCGACATCAATTCACTGTCACACTTTATGCTGCAGCAACAGATAGAGAGTGAGCAGGGGGGTGTAGACTGAGTGATGGGGGGAGGacgcttgtttgtgtgtgtgcgttgtgcgtgcgtgtgtttgaggTGGTATTCCAGAAAAATAAGACTAATGTTCGAAGACCAATaactttctttcttcctttctattCAGTCTAGTCCATCGTGTGCATATTGATGTAGTAATGTATATTATTTAAGTGTTTGAATGATAGGTTTAGTTAAAAGACATACAGATCTTCAAATGATGTTTCTTAATAGATTTTTATCCAGTTAATGTTGGAAACAGGAGTTAAATACTGCAAAACCATTTTTAAAACATAATTCGTAcccttacatttttattttatttttttgaatcaCTTCTGGCCACTGTTGGATTTTGTGTTAGGGATGAGTAGTGTTGCTGAATTCAGTGTACAATGTTATCTATTCAACATGGAATTATGAAGTTGATGATGCTCAACTTCCAATGAATGATTTCAAACTCAGAAGTGTTCAATAGTATAACTTTGTTAATGTTATTACATGAACTGTAGTTTAAAGAGTAGGACGATTGTTTATTTTTATACTGTGTGTTCATACCATAAATGCCGTTTGAAATAGGAATAATATAATTGTAAGAAGAGTTAGAAAATGCATATAAACCATAACAAGAATTAACAAATTGAACAATCATTAGATGGTAATATTGAAAAAATATAATCAATCAAATCTTATTAATCAATCAATGAATTAACCAATTACACATGTTCTCCTTGTGGGGACTGTTACATTGAATGTAACCCACCGAATGTAAATTCAAACACATGTTTGTCATGTTAAGACAGTTGTTTACACTTAGAAATAACAAGAAAATTAAGTACATTGAATCAAAAACATGGAAGGTGTTCCACAGGGGTTGTTTCTTGGTCCTGTACTTTTTACTGTTTACATTAACAAAATTGActtgtctgtaaaaaaaaattgtaacctGCACTTGTATGCCTAAAGTACTGTTGTTTATGCTATTGTTGACCAAGCACGGTTGACCAAGCTCTGTCTGAACTACAGTCTGCCTTCATTGTATTACAGAAAAACTTTATTGACCTGAAATTAGTATTGAATACAGGTAAAAGTATATGTAGTTCTCTAGAGCACATAAACATAGCTCTGTGTTAAGCATATGTACTTTAGATGGTGTCAACATTGATCGTGTCCCTGCTTCCGAGTATCTGTATAGATGAAAAgctgtcttttaaaaagcatattcATGAGTTAGTTAAGAAGCTGAGAATAAAAATGAGCTTCTTCTATAGAAATAGGTCCTGTCTCTCGATAAATAGAGAGTCAggacctggggcggcagggtagactagtggttagagtgttggaatagtaaccgaaaggtttcatgttcaaatccccgagctgacaaggtacaaatctgtcttctGTTCTGTTCAAATCTGTCTTCTGTTCTGGaaaatctgttctgcccctgaacaggcagttaacccattgttcctaggccgtcattgaaagtaagaatttgttcgtaactgaccgTAAAGGTtcaaaaaataaatttaaaaatgcAGATTATTCAGTCAACATTCCTATAGGTCCTAGACTACGGCGACATCATCTATATGAAAGCAGCTGCTACTTCATTAAAGCCATTAGATGCCGTTTGTCATAGCTCATTGCGCTTTGTTACGTGCGACAATTGTAATGCTCATCActctgcattctctaccagaaagttggttggcccttTTTGATACATTGCTTTGTTTTCATTTATAAAGCACTTTTACAAAAAGTCCCACTTTACCTAACGTCATTACTGAACCTTTGACATACGAGTTACCACACCTGGTTAACTCTGGAAATGTATTTGTTCTCTactgagttaggtaaatcagcttttagttttcatgcaccttatttgtggaacgatcttcaaaatgttcttaaaTGTGTTGTTTTGGTGCCTCTGtggcaattcagaaagctgattttAGGACctttattactgatgaatgtgttatTTGTTTTATGACCGTGTAGTTTCTTTCCttctgcttgcattttgtatttatattgatgtgtgtattttctgtaatttatGTCATTCAGGGCTCataaaataaaggttgaataaatggT

Function

NR:

description
NEDD4-binding protein 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005038599.1 False 3502 mRNA 0.54 10 39972319 39995553
XM_036957810.1 True 5845 mRNA 0.47 9 39972320 39997941

Neighbor

gene id symbol gene type direction distance location
LOC110500392 LOC106608967 coding upstream 13089 39953279 ~ 39959230 (+)
LOC110500831 NA coding upstream 19518 39945263 ~ 39952801 (+)
LOC110500384 LOC106608960 coding upstream 115814 39828322 ~ 39856505 (+)
acox3 acox3 coding upstream 266117 39673972 ~ 39706202 (+)
mpdu1b LOC106608952 coding upstream 372004 39595167 ~ 39600315 (+)
LOC110500394 LOC106608969 coding downstream 4957 40002898 ~ 40050645 (+)
tmm85 emc4 coding downstream 55940 40053881 ~ 40060698 (+)
LOC110500395 plcg coding downstream 88245 40086186 ~ 40102011 (+)
LOC110500396 NA coding downstream 115035 40112976 ~ 40116217 (+)
LOC110500397 LOC106608972 coding downstream 120350 40118291 ~ 40133485 (+)
G1737283 NA non-coding upstream 12033 39960074 ~ 39960286 (+)
G1736473 NA non-coding upstream 113400 39858619 ~ 39858919 (+)
G1736434 NA non-coding upstream 129357 39776431 ~ 39842962 (+)
G1736377 NA non-coding upstream 267183 39704608 ~ 39705136 (+)
G1736209 NA non-coding upstream 521141 39450860 ~ 39451178 (+)
G1737310 NA non-coding downstream 1474 39999415 ~ 39999762 (+)
G1737344 NA non-coding downstream 53508 40051449 ~ 40051766 (+)
G1737345 NA non-coding downstream 54825 40052766 ~ 40053023 (+)
G1737351 NA non-coding downstream 63723 40061664 ~ 40061904 (+)
G1737370 NA non-coding downstream 79692 40077633 ~ 40078011 (+)
G1736484 LOC106608963 other upstream 95369 39875756 ~ 39876950 (+)
G1736098 NA other upstream 682649 39233664 ~ 39289670 (+)
nat16 LOC106608942 other upstream 762834 39179147 ~ 39211035 (+)
arrb2b LOC106608931 other upstream 1047391 38867935 ~ 38939119 (+)
LOC110500301 LOC106609063 other upstream 1890045 38076983 ~ 38083972 (+)
G1737353 NA other downstream 64765 40062706 ~ 40063325 (+)
LOC110500409 LOC106599480 other downstream 403563 40401452 ~ 40404840 (+)
G1737866 LOC103384823 other downstream 554070 40552011 ~ 40553853 (+)
G1738057 LOC100194703 other downstream 995214 40955050 ~ 40997320 (+)
G1738119 NA other downstream 1026769 41024710 ~ 41029136 (+)

Expression


Co-expression Network