LOC110500394 (LOC106608969)


Basic Information

Item Value
gene id LOC110500394
gene name LOC106608969
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 40002898 ~ 40050645 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021577744.2
agagagagggagagaaagagagcgagACAAGAGACCAGATAAGGATCAAGATCAAGATATAgagTCGCCTTTCCCTGACAACAAGGACATAGAGATAAAGCACCAAAGTACCATGCAGGACGACCCTGAGGGATACTTGGTGATTGGGGGAAACAGAACGGGAGACATCCACAGGACTGGTAGTGGGTTTGCTGGTGGGGGAGGTatgggagacaggggaggagacaggggagatgggCAAGACACAAGCATGGAGCTGAAGGATTTGACCAGCAGCACAACAGACAATGAACATCTGATTGCAGAAGAAGACGAGGACGGTGACATCATAACGCAAAGGAATGACATCACAGCAAAAATGAATGACATCAGGACTCAATGTGATGACTTCGGAGATGAGGTCAACGGTGATTCCGAGAGCCAATCAGCGCACAGTGAGCCTCGGGTCTACATAGAGGTGGGTGTGGCTAAGGTGGAGCTAGCCTCGGGACCACTCAAGGCCCAATCGTCTTTCCAAGAATCTCCGGAATTCCCGTCCACTGTGAGCACAGGTAACCATGGCACTGACATTAAAACAGACACTTTGATGAATGACAGCACAAAATCCAGCAATGACTCTGATAATGACAGCGCTAAAACGACCACAGACACTTATGACAACTTAGATGATAGCGGCAAAGTCAACAGGGAAGATTCTTCGGACAAAAAGAGTACTGATGCTTTTAAATTAAAAACAAACCCACACAATCACAACTCTGATCTGGCCATGATGGACTCCACAACAACCCTCTGCAGACGTAACCACGACAACTACACAACCCCCGACATCCCGTCCGACGACACATCCACCTCCAGATCGGAAACTTCAGTCCCTCTCAACCAATCGGCCCCGGCGCCCGACATCACATGGGACGACACCCCGAACGTCAGGGAGGGGGGTGAAGGCGACGGTAGACCGCCCTCACAGAGGAGTGTAGCGGAGGGGGTGTGCTGCTGCTACAGAGCAGTACACAAGGCCTTCATAAGGTGCCTAGAGGAGACACCAGCCATGCTCCCTGGACTGCTGCTGGCCATGGGCTTCTGTGTGGCTATCATCATCCTTATACCAACTACCGGAAGGCTgaaagagAACATCAGTGTCCATGTAGGGGCCCTGTCCGTGGTCTGTGTGGTGCTGTGTTTGAGCACAGCCCTGCTGGTGGCCCTGCCCTGGCTGGCCGTGGTGAGGCGGTGTGGAGGAGCGCTGTCACTTTGCCTCTGGGGGGCCCTGTATGTCACAGCTATAGTCTTCACCTTCACCGGAGGGCCCGTCACCGCATGGGAACAGGTAGcgttcttcctcttcctgtctctgtgtgtgtacacgGTGCTGCCCCTGTCCCTAGCCTGGGCTCTGATGGTGGGCATAGGGACCAGTGTgtcacacatcatcatcatcagtgtcTACGTTCCCGTCACCAGGCCTAACACACCAAACCTGGCAGTGCAgCTGGTGGCCAAtgctgtgttgtttttgtgtgtgaaCTGTGTGGGAGTGTTTCACCTGTGGCTGACTGAGCATGCCCACAGGAAGTCCAGTAAGAAGAAAGAGAGGTTCAGCGCCATGCGCTCCCAGAGGGACATGCAAAAACACCAGCAGGAGCACCTCCTCCTGTCCGTGTTGCCACGATATATCGCCATGGAGCTGAAGACGGAGATCATCAAACGACTGtcagagaataaagagaaaggacagaactTTCACAGTCTGTACATCCGGCAACACAAAGATGTCAGTATTCTGTATGCTGACATTGTGGGGTTTACTAAGCTGGCCAGTACCTGTTCTcctgaggagctggtgggagTCCTCAATAAGCTCTTCGGCAGGTTCGATGACATTGCCAAGaagaaCGAGTGTTTGCGTATAAAGATCCTGGGTGATTGTTACTATTGCGTGTCGGGTCTGCCAGACCCCATCCCGGCCCACGCCAGGAACTGTGTTCAGATGGGACTCAACATGTGCACGGCTATCAATAAACTACGGGAGGCTACTGGTGTGGAGATCAGTATGAGAGTGGGTGTGCACTCCGGCAACGTTCTCTGTGGCGTGATTGGTCTACAGAAGTGGCAGTACGACGTCTGGTCACATGACGTGACTCTGGCCAACCATATGGAGTCTGGGGGCATGCCAGGGCGTGTCCACATCACAGAGGAGACACTGGGACACTTAGCTGGGGTGTACCAAATGGAGGACACTGACGGGGGAAGCCGGGATGCTCTGCTAAAGGGGAGGAAAACCTACCTGGTGATCGACCCCCATAAGGAAGACACCACCTCTAAGAGGAAGGAAAAGATAAACATCCTGACGGTCAGTGGTCATAAGCAGCGAGCCTCAGTGAGGATGTCTCAGTACCTGCAGTCCTGGCAGACCATCTGTCCATTCTCTGACCTCAGCAACCCTGAGGCCACACCCACCCAGCTGCCAATCAACCCGACCTGCGCCAGCACGAATCAATCACAGCCATCCGCAgatagaCCACCTACTCAGACCGATTCCAGCAGTACCAGTCAGGTCCTGGACGACGGCATAAGAGGGTCGTTAGATACTATTGACGGCGCAGGGCGGAGAGAAAAAAAGCTGAACTGCTTCACGCTGTTATTCAATGACCTAAAGCTGGAAAAACAGtttCGTCTCTCAGAGGTCAAAGGTCTACACCAGTCAGTAGGCTGCATGGCTCTCATCTTCGTGTCTCTGTTTACTGTCCAAATGCTCGTCTCCCAGAAaaactTTCACATGGCTGTGTCGTATGGCGTCACCTTCCCTGTTCTAGTGTTGCTTCTCTCTGTGGTCTGCACGGGACACCTCAagAGATGGCGCTCTAAAATCCCTCTCAGTCTACAGTGGGTGACGTCGCTGTCACAGGGAGTGGCCACAAGGCCGGCGGCACGTTTACTGCTGGTCTGCCTTTGTCTACTCATCACCTTGCTTATGGCCATACTGAACTTTTTCTTTCTACCTGGAGACAACTGTGCCTCCAACTCGTACAACACATCACAACTACAGAACCTCAACCTGTACACCGTCCCTtaTTACCTGTACTGCTGCCTGCTGGCCATGCTAGGTGTGGTGGTGTTTGTGAGGACGTGCATGTCCGTCAAGGTGTTGCTCCTCACACTGGCTGTAgtagtctacctgtctctcttcctctacgTCTACGCACCTCGCTCAGACTGTTACATGGCCCTGCTCTACAATGATACAAAGCCTGGAGTCCTAAAGGAGCCTAAGATCATGGCTGGAGTTTGGCTGTTCATCTTCTATTTTACATGCCTGATACTGGCACGACAGGACGAGTTGGGCTGTCGCGTGGAGTTCCTACTGCAGCAGTGTTTCAGAACTGAGAGGGTTGAGATGGAGACCATGGAGAATGTTAACAAACTACTACTGAAGAATGTCCTGCCTCTTCATGTAGCATCTAAATTCATGGGCAAGACCATACGCAACCAGGACCTGTACAGCCAAtcatgtgactgtgtgtgtgtgatgttcgCCTCGGTACCCCAGTTTAAGGAGTTCTACAGCGAGAGCAGTGTGAACCGAGATGGACTGGAGTGTTTACGTTTCCTCAATGAGATCATCTCAGACTTTGACGAGcttCTCTCAAAGCCAAAGTTCTGTTCTGTGGAGAAGATTAAGACTATTGGCAGCACCTACATGGCAgctgctggtctgaccaatcctGCTATAGGGGACGAGCGAAAGGACTGTGATGTGTCCTACAGCCATGTGCGCAGCATGGTAGAGTTTGCCATCGCTCTGAAGAACAACTTGGAGTCCATCAACCAACACTCCTTCAACAGCTTTAAGCTACGCATCGGGATAAACCATGGTCCAGTGATTGCGGGGGTGATCGGAGCCCACAAACCACAGTATGATATCTGGGGGAACTCTGTGAACGTGGCCAGTAGGATGGACAGCACCGGAGTACTAGACAAGatccaggtGACAGAGGAAACAGCGCAGGTGGTGAAGACCTTTGGCTTCAGTGTGACCAAGAGAGGAGTCATCACCGTCAAGGGCAAGGGAGAACTTACAACCTACTTCATCAACACCGACTGACCAATCATCTTCTCTCTTCTGACCTCTCCAACCAATCGTCGTCACCCATCCAGCCACACATCAAACTCTGACCTTCAGTCGTCCTTATTTATTCTCATGCAGTAATGCTGTGAACGGGGATGCTGCATTAGGAGGAAGGAGGTGCTGTCTTTTGGAGGAATATGTTAAACCAATTACAGATGTCATTATAACGTACTGTATTGAACTTTTGATCGTGTAATTTCAGATCAATGTTTttcattttgttttttaaaagagATTGATGTATTTTGTCTATTCTGAATGACTTTATAAGCACGCCTGGGCATACAGTATATGAATGTACATAGAAATAAACTAAGATGTGGAAGGTTGTGCTTCTGTGTACGCTACCAAATACCAAATTGCATTGATGTTTTTGTAAGCTCATGAAAATGTGTGTATTTCCTTTTACTCATAACGTTTCAGGAACCTGTGAAGCACTGGACGTGTAGAAATATGTCGTATTTAAACAATTGTTTCGACGTATGATAGTTTGGTGAAGCAAGATGACGTGAATTCAATATTAAACTATATTTTGGAATTTTGA

Function

NR:

description
adenylate cyclase type 4-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021577744.2 True 4670 mRNA 0.50 28 40002898 40050645

Neighbor

gene id symbol gene type direction distance location
LOC110500393 LOC106608968 coding upstream 4957 39972319 ~ 39997941 (+)
LOC110500392 LOC106608967 coding upstream 43668 39953279 ~ 39959230 (+)
LOC110500831 NA coding upstream 50097 39945263 ~ 39952801 (+)
LOC110500384 LOC106608960 coding upstream 146393 39828322 ~ 39856505 (+)
acox3 acox3 coding upstream 296696 39673972 ~ 39706202 (+)
tmm85 emc4 coding downstream 3236 40053881 ~ 40060698 (+)
LOC110500395 plcg coding downstream 35541 40086186 ~ 40102011 (+)
LOC110500396 NA coding downstream 62331 40112976 ~ 40116217 (+)
LOC110500397 LOC106608972 coding downstream 67646 40118291 ~ 40133485 (+)
LOC110500398 LOC106608973 coding downstream 86981 40137626 ~ 40158575 (+)
G1737310 NA non-coding upstream 3136 39999415 ~ 39999762 (+)
G1737306 NA non-coding upstream 16289 39978736 ~ 39986609 (+)
G1737283 NA non-coding upstream 42612 39960074 ~ 39960286 (+)
G1736473 NA non-coding upstream 143979 39858619 ~ 39858919 (+)
G1736434 NA non-coding upstream 159936 39776431 ~ 39842962 (+)
G1737344 NA non-coding downstream 804 40051449 ~ 40051766 (+)
G1737345 NA non-coding downstream 2121 40052766 ~ 40053023 (+)
G1737351 NA non-coding downstream 11019 40061664 ~ 40061904 (+)
G1737370 NA non-coding downstream 26988 40077633 ~ 40078011 (+)
G1737372 NA non-coding downstream 28701 40079346 ~ 40079585 (+)
G1736484 LOC106608963 other upstream 125948 39875756 ~ 39876950 (+)
G1736098 NA other upstream 713228 39233664 ~ 39289670 (+)
nat16 LOC106608942 other upstream 793413 39179147 ~ 39211035 (+)
arrb2b LOC106608931 other upstream 1077970 38867935 ~ 38939119 (+)
LOC110500301 LOC106609063 other upstream 1920624 38076983 ~ 38083972 (+)
G1737353 NA other downstream 12061 40062706 ~ 40063325 (+)
LOC110500409 LOC106599480 other downstream 350859 40401452 ~ 40404840 (+)
G1737866 LOC103384823 other downstream 501366 40552011 ~ 40553853 (+)
G1738057 LOC100194703 other downstream 942510 40955050 ~ 40997320 (+)
G1738119 NA other downstream 974065 41024710 ~ 41029136 (+)

Expression


Co-expression Network