LOC110500409 (LOC106599480)


Basic Information

Item Value
gene id LOC110500409
gene name LOC106599480
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 40401452 ~ 40404840 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002470100.2
TTGCATCACTGCTGCGTAACATTTTGCGCCCCTAGGCAACtacactgatgcaggtaccttttgcAAATGGTCGCATGCGATTGGACACATGGAGGAGAGAATCATTTTCGCAGTATCCTCAAAACCATGTACTTTTGACACAACTTCTGACAGCTACAGGGACATAAACACAACAAAAATGCTGATTGGAGACAAGTGTCCACGATAGTAGGATTGCCAGGTCAGTTTAGTAGTAAGCTTGTGCTAGATGTGGCTagttagcgttagctagctagctaacctagccaatgaggtgtgtgtgttaaagAAATAGTCAAATAAATTATGCTAGTTACTACCCCTGATAAGTACCAAATAATCATGTTTGAAAGAGTGTGTATGCTATATAAATAGTAATAGAAATGGTCGATACTACTGTACCCctgataatttggtcagataaccctgtgtgtgtgtgtctatgtgtacagTAGGTGACATGTCCATGATAGCTATCTAATAACTATAGTTATGCTAGGTAATGGTTTGGCTTATCATGTTCATGTCTATGTAGAAGAAGACTGtaggaggaagtggagaggacTCAGGGAcaggtatcagagagagagaagggcagagaaagagaagaggtctGGGTCAGCAGCTTCAGGCCAGCAGCCTTGGCGCTTCTGCCACATTCTTTCTTTTCTGGATCCATTTATTGTGCCTAGGGCAATGAGTGGCAATTTTACAGCCAGACCCTCTACTACGTCATCCACAAGTGTTGTTGCCACCGGCGCATCAAGACCCTCAACGTCACCTACAAATGCGACCATCACCTCCACGAGTATGACCACTACCGGTGCAGCCATGGAAGACGATGAAATGGAGGAAGCACCTCTGGATCTAGGACCACCTGAGATAATTATGAACCTCACGGAAGTGACCACTGAGGACCTCGTTGAACAGGATGTGGccgtggagagagacagaaactaaGAGAAACAACGTCACACCAGGCGTCATCGGAGGTACCAGCCCCCAGATCCACTCAACTCATTTCAGCAGAGGCTCTCCTCCAAGACGTCGAGAGGGATGCAGCCCAACCTGATGCTCACAGGAAGGAGGATGAAGAGACCCTCTTTGCCATGAGCCAGGTGCCAACACTGAAGAGGCTGCCTCAGCAAAGAAAAGCAGCAGTCAAGGTTAAAATGTATCAGCTGCTTTTCGAAGCCGAGTTCAATGAAATGGAGTCGATTTAGCCGACCAGCTCacaggaaggacaggaagaggagtTGTCTGGTTGTTGTTTTGACCTCCCTCATTGTACCTTTCTTTTCACACACGTCAGTTCTGTTTAAATTCAGTCAATACATAAAGTAATTTGTTTATAAAGTCTTAGGATAGCTTTCATTATTAGTGTTGCATAGATTTCTGAATTGAAACTCATACGTAGTTTTCACAGATGCTCTTGGTCTCTTACGAGACTAAAggtcaatatatttatttcatttaaaaccACTTGAAAACCAGGGTGTTGAAACATTTTGTGAAGTTATGTTCCATCGACTGGTCCGTGACGTCCAGGGGCCATTTGTTTGTTTAGCTGTCTTATGGCTACATATTATTCCCTTtttctcagagacagagacacacacacacctcttcgtACCTCAGATCTCCAgtgccctgccctctctctctttatggccATGTCTGAAGTTCCCCTACTAAGTCTAGGCTTTATGAGTAGTCCCTGTATcggtctgcagttgtgccaaaaaTACATGCTCTTGCTGTTCTCTTACAGATTACAGGCTACACATTCatttaaaacaaataataataatttacacGCACGTACACACCTCTTTCagtagttttatttttttttaaacatttttacaaCACACTGTTGTTCTTGTCATGTTCTTTCCTGTACTTGAATACTTATTCAATTATAATGTTTTCATAGTCAGTTGTTTATTAATATCTAATTTAGACTTAATCTGCTTATTTCTTCCCAACACCTTTGCTGATCTAAGACAAGATGAAAGTAAAAGCACATTCTCTTCCTAATTAGTTTTTTTACCACCTGTATTTTGTCAGGCCAGTGAACATGGTGGTAAACTGTACTATTTGTATGGACCCTAGGTTACCCTTTCCCTTTGTTATCATACTAACTGTATGTCGTATAACCTTAATTAGTGCTCCCGCTCACCTGGTGTACCATGCCAGGTGTGTATAATACTGACGTTAATGGGAGAGGGACGGGGTTAAGGTGTGGTCTTTACTCCCAAATTTCACTTAAATATGGCATCCAAATGAATAGAGACAATGATACATAAAGTCATCTGGGGGGAAAAATGCAATTTTATGGACAACGGTGGATGGTTCTTAAAATAACCTTTGTGTTATGGGGCTCTTAAATTACCTCCGCAGGTATTTGTGGAGAATACGTGGCCTTCACGCAGGCTTCGACATTTGAGGGGCTGAGACCAAGCACTCTCCGATACATTCTCCATCGGGCTGCCAGAATCCCAGAGGCGCATTCAACAACTAACCCTGGACAGTTGTTTGTTAAAGATCCTTACAGGCTTTGGCAATGGCAGCTGACGTCCAGCGTAGGGCCTCATGAGGTTGGGTCTTAAAGGGAAGGCCTCATCGCCGACGAAGACGTGGGGAACAGGTCCCAGGTCTTCAGCCCCAGGGAGTGATGCAGGTGGTGGAATATCCAGGGTGCCATCCTGAAGTGCCTGGCCAAAGGCAGAGTCCCGGAGGGTCCCGCCATCACTTCCCTTGCCTTGTAGAATTGGGAACCTGAGCACGGTGGAGCCTGGATTACTACATGTTTCCCGTCAAATGGAGCCAAGACAGTTGGGGAAATTCCACCTCTCTAGGAACTCGGCAGCGATGGCCCTCCAGTCTTCCTCCTTGGGGACA
>TU1989855
ggtaccttttgcAAATGGTCGCATGCGATTGGACACATGGAGGAGAGAATCATTTTCGCAGTATCCTCAAAACCATGTACTTTTGACACAACTTCTGACAGCTACAGGGACATAAACACAACAAAAATGCTGATTGGAGACAAGTGTCCACGATAGTAGGATTGCCAGAAGAAGACTGtaggaggaagtggagaggacTCAGGGAcaggtatcagagagagagaagggcagagaaagagaagaggtctGGGTCAGCAGCTTCAGGCCAGCAGCCTTGGCGCTTCTGCCACATTCTTTCTTTTCTGGATCCATTTATTGTGCCTAGGGCAATGAGTGGCAATTTTACAGCCAGACCCTCTACTACGTCATCCACAAGTGTTGTTGCCACCGGCGCATCAAGACCCTCAACGTCACCTACAAATGCGACCATCACCTCCACGAGTATGACCACTACCGGTGCAGCCATGGAAGACGATGAAATGGAGGAAGCACCTCTGGATCTAGGACCACCTGAGATAATTATGAACCTCACGGAAGTGACCACTGAGGACCTCGTTGAACAGGATGTGGccgtggagagagacagaaactaaGAGAAACAACGTCACACCAGGCGTCATCGGAGGTACCAGCCCCCAGATCCACTCAACTCATTTCAGCAGAGGCTCTCCTCCAAGACGTCGAGAGGGATGCAGCCCAACCTGATGCTCACAGGAAGGAGGATGAAGAGACCCTCTTTGCCATGAGCCAGGTGCCAACACTGAAGAGGCTGCCTCAGCAAAGAAAAGCAGCAGTCAAGGTTAAAATGTATCAGCTGCTTTTCGAAGCCGAGTTCAATGAAATGGAGTCGATTTAGCCGACCAGCTCacaggaaggacaggaagaggagtTGTCTGGTTGTTGTTTTGACCTCCCTCATTGTACCTTTCTTTTCACACACGTCAGTTCTGTTTAAATTCAGTCAATACATAAAGTAATTTGTTTATAAAGTCTTAGGATAGCTTTCATTATTAGTGTTGCATAGATTTCTGAATTGAAACTCATACGTAGTTTTCACAGATGCTCTTGGTCTCTTACGAGACTAAAggtcaatatatttatttcatttaaaaccACTTGAAAACCAGGGTGTTGAAACATTTTGTGAAGTTATGTTCCATCGACTGGTCCGTGACGTCCAGGGGCCATTTGTTTGTTTAGCTGTCTTATGGCTACATATTATTCCCTTtttctcagagacagagacacacacacacctcttcgtACCTCAGATCTCCAgtgccctgccctctctctctttatggccATGTCTGAAGTTCCCCTACTAAGTCTAGGCTTTATGAGTAGTCCCTGTATcggtctgcagttgtgccaaaaaTACATGCTCTTGCTGTTCTCTTACAGATTACAGGCTACACATTCatttaaaacaaataataataatttacacGCACGTACACACCT
>TU1989856
ggtaccttttgcAAATGGTCGCATGCGATTGGACACATGGAGGAGAGAATCATTTTCGCAGTATCCTCAAAACCATGTACTTTTGACACAACTTCTGACAGCTACAGGGACATAAACACAACAAAAATGCTGATTGGAGACAAGTGTCCACGATAGTAGGATTGCCAGGGCAATGAGTGGCAATTTTACAGCCAGACCCTCTACTACGTCATCCACAAGTGTTGTTGCCACCGGCGCATCAAGACCCTCAACGTCACCTACAAATGCGACCATCACCTCCACGAGTATGACCACTACCGGTGCAGCCATGGAAGACGATGAAATGGAGGAAGCACCTCTGGATCTAGGACCACCTGAGATAATTATGAACCTCACGGAAGTGACCACTGAGGACCTCGTTGAACAGGATGTGGccgtggagagagacagaaactaaGAGAAACAACGTCACACCAGGCGTCATCGGAGGTACCAGCCCCCAGATCCACTCAACTCATTTCAGCAGAGGCTCTCCTCCAAGACGTCGAGAGGGATGCAGCCCAACCTGATGCTCACAGGAAGGAGGATGAAGAGACCCTCTTTGCCATGAGCCAGGTGCCAACACTGAAGAGGCTGCCTCAGCAAAGAAAAGCAGCAGTCAAGGTTAAAATGTATCAGCTGCTTTTCGAAGCCGAGTTCAATGAAATGGAGTCGATTTAGCCGACCAGCTCacaggaaggacaggaagaggagtTGTCTGGTTGTTGTTTTGACCTCCCTCATTGTACCTTTCTTTTCACACACGTCAGTTCTGTTTAAATTCAGTCAATACATAAAGTAATTTGTTTATAAAGTCTTAGGATAGCTTTCATTATTAGTGTTGCATAGATTTCTGAATTGAAACTCATACGTAGTTTTCACAGATGCTCTTGGTCTCTTACGAGACTAAAggtcaatatatttatttcatttaaaaccACTTGAAAACCAGGGTGTTGAAACATTTTGTGAAGTTATGTTCCATCGACTGGTCCGTGACGTCCAGGGGCCATTTGTTTGTTTAGCTGTCTTATGGCTACATATTATTCCCTTtttctcagagacagagacacacacacacctcttcgtACCTCAGATCTCCAgtgccctgccctctctctctttatggccATGTCTGAAGTTCCCCTACTAAGTCTAGGCTTTATGAGTAGTCCCTGTATcggtctgcagttgtgccaaaaaTACATGCTCTTGCTGTTCTCTTACAGATTACAGGCTACACATTCatttaaaacaaataataataatttacacGCACGTACACACCT
>TU1989857
ggtaccttttgcAAATGGTCGCATGCGATTGGACACATGGAGGAGAGAATCATTTTCGCAGTATCCTCAAAACCATGTACTTTTGACACAACTTCTGACAGCTACAGGGACATAAACACAACAAAAATGCTGATTGGAGACAAGTGTCCACGATAGTAGGATTGCCAGAAGAAGACTGtaggaggaagtggagaggacTCAGGGAcaggtatcagagagagagaagggcagagaaagagaagaggtctGGGTCAGCAGCTTCAGGCCAGCAGCCTTGGCGCTTCTGCCACATTCTTTCTTTTCTGGATCCATTTATTGTGCCTAGGGCAATGAGTGGCAATTTTACAGCCAGACCCTCTACTACGTCATCCACAAGTGTTGTTGCCACCGGCGCATCAAGACCCTCAACGTCACCTACAAATGCGACCATCACCTCCACGAGTATGACCACTACCGGTGCAGCCATGGAAGACGATGAAATGGAGGAAGCACCTCTGGATCTAGGACCACCTGAGATAATTATGAACCTCACGGAAGTGACCACTGAGGACCTCGTTGAACAGGATGTGGccgtggagagagacagaaactaaGAGAAACAACGTCACACCAGGCGTCATCGGAGGTACCAGCCCCCAGATCCACTCAACTCATTTCAGCAGAGGCTCTCCTCCAAGACGTCGAGAGGGATGCAGCCCAACCTGATGCTCACAGGAAGGAGGATGAAGAGACCCTCTTTGCCATGAGCCAGGTGCCAACACTGAAGAGGCTGCCTCAGCAAAGAAAAGCAGCAGTCAAGGTTAAAATGTATCAGCTGCTTTTCGAAGCCGAGTTCAATGCTCacaggaaggacaggaagaggagtTGTCTGGTTGTTGTTTTGACCTCCCTCATTGTACCTTTCTTTTCACACACGTCAGTTCTGTTTAAATTCAGTCAATACATAAAGTAATTTGTTTATAAAGTCTTAGGATAGCTTTCATTATTAGTGTTGCATAGATTTCTGAATTGAAACTCATACGTAGTTTTCACAGATGCTCTTGGTCTCTTACGAGACTAAAggtcaatatatttatttcatttaaaaccACTTGAAAACCAGGGTGTTGAAACATTTTGTGAAGTTATGTTCCATCGACTGGTCCGTGACGTCCAGGGGCCATTTGTTTGTTTAGCTGTCTTATGGCTACATATTATTCCCTTtttctcagagacagagacacacacacacctcttcgtACCTCAGATCTCCAgtgccctgccctctctctctttatggccATGTCTGAAGTTCCCCTACTAAGTCTAGGCTTTATGAGTAGTCCCTGTATcggtctgcagttgtgccaaaaaTACATGCTCTTGCTGTTCTCTTACAGATTACAGGCTACACATTCatttaaaacaaataataataatttacacGCACGTACACACCT

Function

NR:

description
PREDICTED: uncharacterized protein LOC106604991

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002470100.2 False 2922 mRNA 0.44 3 40401452 40404840
TU1989855 False 1464 lncRNA 0.46 3 40401504 40403685
TU1989856 False 1307 lncRNA 0.45 3 40401504 40403685
TU1989857 True 1439 TUCP 0.46 3 40401504 40403685

Neighbor

gene id symbol gene type direction distance location
LOC110500405 LOC100194596 coding upstream 48563 40322170 ~ 40352889 (+)
LOC118942929 NA coding upstream 144407 40255990 ~ 40257045 (+)
LOC110500400 LOC106608974 coding upstream 206978 40166092 ~ 40194474 (+)
LOC110500398 LOC106608973 coding upstream 242877 40137626 ~ 40158575 (+)
LOC110500397 LOC106608972 coding upstream 269585 40118291 ~ 40133485 (+)
LOC110500418 NA coding downstream 389609 40794449 ~ 40837182 (+)
LOC110500419 LOC106608987 coding downstream 442152 40846992 ~ 40855143 (+)
LOC110500424 LOC106608992 coding downstream 645349 41050189 ~ 41058764 (+)
LOC110500425 LOC106608993 coding downstream 703606 41108446 ~ 41125934 (+)
LOC110500427 LOC106608994 coding downstream 725986 41130826 ~ 41183998 (+)
G1737519 LOC106608979 non-coding upstream 13215 40386954 ~ 40388237 (+)
G1737449 NA non-coding upstream 21786 40270818 ~ 40379666 (+)
G1737422 NA non-coding upstream 172137 40220359 ~ 40229315 (+)
G1737377 NA non-coding upstream 247031 40153063 ~ 40154421 (+)
G1737789 LOC106608978 non-coding downstream 30478 40435318 ~ 40437210 (+)
G1737815 NA non-coding downstream 56514 40461354 ~ 40461650 (+)
G1737816 NA non-coding downstream 57513 40462353 ~ 40468149 (+)
G1737821 NA non-coding downstream 69763 40474603 ~ 40474831 (+)
G1737825 NA non-coding downstream 73637 40478477 ~ 40478687 (+)
G1737353 NA other upstream 338127 40062706 ~ 40063325 (+)
G1736484 LOC106608963 other upstream 524502 39875756 ~ 39876950 (+)
G1736098 NA other upstream 1111782 39233664 ~ 39289670 (+)
nat16 LOC106608942 other upstream 1191967 39179147 ~ 39211035 (+)
arrb2b LOC106608931 other upstream 1476524 38867935 ~ 38939119 (+)
G1737866 LOC103384823 other downstream 147171 40552011 ~ 40553853 (+)
G1738057 LOC100194703 other downstream 588315 40955050 ~ 40997320 (+)
G1738119 NA other downstream 619870 41024710 ~ 41029136 (+)
G1739103 NA other downstream 1483971 41888811 ~ 41897856 (+)
cxcl8c cxcl8c other downstream 1880216 42285056 ~ 42288500 (+)

Expression


Co-expression Network