prkd4 (LOC106608995)


Basic Information

Item Value
gene id prkd4
gene name LOC106608995
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 41203290 ~ 41215989 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021577808.2
CACATGAGGAAATCAAATCCACCAGTGTGCTTCTGAAGAAAAGGTTGAGAACAGTAGCCACTTCATTTGTCAATGTGTCTTTTGAACGAGGACAGGAGACCGGACTGCTAAGATGGAGCGTTCCGAGCCTGGAAGGTGTCAACTAGACTGCATGGACTCTGAAATATCAAGTTCTCTCTCCAGGATGTCAGTGGCCCGGTCCAGCCCGGGTACCCCTGATCGACCTTCCCACCCCGCGGCCCCCGGGCCCCTCCAGGCACCTCTCGGCCCTGCCTTGGTCCAGTTCCAGCTAGGCCTCTTCAGGGAGGTGGTATGGGTGCCTAGAGGGCAGCTCAGCTTTCACCACGCCAAGAGACTGGCGGCAGAGATCATAGAACGCAAGGCTCCAGACTGCAGTGTGGTGGGTGTAGGGGAGAAGGTCCTCCTGTTTAGACACCAGCCTGGCTCAGAACACCTCCTCCACAGACTCACAGACCAGGATCCACTGCTGGACGGTGACCTCATAGAGGTCATCCTCTCAGGATCAGCTGCTGTGACGGAGATGAAGATCCGCCCACACACCCTGGCTGTCCAATCATATCGCACCCCCACCTTCTGTCACCACTGTGGTGAGATGCTGTGGGGACTGATACGTCAAGGGTTAAAATGTGAAGGTTGTGGGTTAGACTTCCATAAGCGCTGTGCGCTGCAGTTGCCTAGTGACTGTAGCCGCGCACGGCGTCGTGTGTGTGGCCCCAGCCTGTCCCTGTTCCCCCCTGGCAGGCCCCGGACGCACTCCCTCTCCACACCTGCAGGAGGCAGTCTAGAGGAGATCAGCATGTCCAAGCCCAGGTCCAGACCCCCGTCATGGACAGATCACCCGGTGTGGCTGGGGGTGGGCCAGGGAAAGGATGGTGAGACGGGCAGGGCCAGGGTGCCCCACACCTTccacatccacagctacaccaaGCCTACCGTGTGCCAGCACTGCCGCCACCTCCTCAAAGGCCTTTTCCGCCAAGGCCTGCAATGCGCTGacTGTAAGCTGAACTGCCATCGTCGCTGTGAGAGCTCCCTGGTCCCCGCGGACTgtcctggagagaggaggaacaccAATGGGGAAGGAGACTCAGTGTCCAGTCTCGGCTACAAGAACGACacagaggatgatgaggaggataTGAGCTTGAGTTTAACATCACTAGAAGACGATGACGACGAGCCGTCTACCGAGGTTCCATTTGCTGAGAACAAGGAAGTGGGACATCAGCCATCAATCATtccatGTTTCAGTAGTTATATTCCTCTAATGCGGGTCGTCCAGTCAGTCCGTCACACTAAAAGACAGGCCAGTGGAGTACTGAGAGAGGGTTGGCTACTGCATCACACCAACACTGACACACTGAGGAAACGTCATTACTGGATATTGGACTGGAAGAGTATCACTCTCTACCAGAACGAGATCAACACCAAGTACTACAAGgaGATTCCTCTATCTGAGGTGCTGCAGGTACGAGGCCCCGCCCAGTTGTCTGTCCCCTTGTTGCCCGGCAACAGTGCCCACTCCTTCGAAGTGGTGACGGGCACGCTGGTGTACTGTGTGTCGGCGGGCCGGGACGGACAGGCCTGGGAGACCGCCGTACGCCAGGCTCTGATGCCCGTGCTGAACAGTGGGCAGGTGGACAAACGGGGACAAGACCATGAACCCCAGAGTGGAAAAAACCCGgaTGTCAGCTCAGTGTATCAGATCTTCACTGATGAGGTGCTGGGTTCAGGACAGTTTGGAGTGGTGTATGGAGGCACCCACAGACAGTCTGGTCAGCCAGTGGCCGTCAAGGTCATCGACAAAACCCGTTTCCCTACCAAACAGGAGAGACAGTTGAGGAACGAGCAGGCAATTCTACAGaatCTGTCCCACCTCGGTATAGTTCTACTGGAGGGCATGTTTGAGACCATGGAGCACGTATTCATTGTCATGGAGAAGCTCCATGGAGATATGCTGGAGATGATTCTGTCCAATGAGAAGGGCCGACTGCCAGAGCGCACCACACGTTTCTTGGTTACACAGattctAGAGGCCCTGCGCTACCTGCACTTCAAACACATCGCTCATTGTGACCTGAAACCTGAGAATGTACTGCTGGCCTCCCCAGACTCTTTCcctcagGTAAAGCTGTGTGACTTTGGTTTTGCCCGCATCATCGGTGAGAAGTCGTTCCGCCGGTCGGTGGTGGGCACACCAGCCTACCTGGCACCCGAGGTCATCAGTAGCCATGGTTACAACCGCTCGCTGGACATGTGGGCGGTGGGTGTGGTCCTGTACGTCAGCCTGAGCGGAACGTTCCCCTTCAACGAGGACGAGGACATCAGACAACAGATCACCAACGCTTCCTTCATGTACCCCCGCCTGCCCTGGTCTAACATCTCACTAGAGGGACTTCCAGTTGTGGTGTGACCTGAGGGAGTTTGAGAAGAGAATGGGCTGTAGGTACCTGACCCACGAGGGGGACGACGACCGCTGGAGATGCCACGCCTTGGACAGGGGCCTGGTCTTCCCCTCTCACCTCACCTGGACCCCCGGGCACGATG
>XM_021577806.2
CACATGAGGAAATCAAATCCACCAGTGTGCTTCTGAAGAAAAGGTTGAGAACAGTAGCCACTTCATTTGTCAATGTGTCTTTTGAACGAGGACAGGAGACCGGACTGCTAAGATGGAGCGTTCCGAGCCTGGAAGGTGTCAACTAGACTGCATGGACTCTGAAATATCAAGTTCTCTCTCCAGGATGTCAGTGGCCCGGTCCAGCCCGGGTACCCCTGATCGACCTTCCCACCCCGCGGCCCCCGGGCCCCTCCAGGCACCTCTCGGCCCTGCCTTGGTCCAGTTCCAGCTAGGCCTCTTCAGGGAGGTGGTATGGGTGCCTAGAGGGCAGCTCAGCTTTCACCACGCCAAGAGACTGGCGGCAGAGATCATAGAACGCAAGGCTCCAGACTGCAGTGTGGTGGGTGTAGGGGAGAAGGTCCTCCTGTTTAGACACCAGCCTGGCTCAGAACACCTCCTCCACAGACTCACAGACCAGGATCCACTGCTGGACGGTGACCTCATAGAGGTCATCCTCTCAGGATCAGCTGCTGTGACGGAGATGAAGATCCGCCCACACACCCTGGCTGTCCAATCATATCGCACCCCCACCTTCTGTCACCACTGTGGTGAGATGCTGTGGGGACTGATACGTCAAGGGTTAAAATGTGAAGGTTGTGGGTTAGACTTCCATAAGCGCTGTGCGCTGCAGTTGCCTAGTGACTGTAGCCGCGCACGGCGTCGTGTGTGTGGCCCCAGCCTGTCCCTGTTCCCCCCTGGCAGGCCCCGGACGCACTCCCTCTCCACACCTGCAGGAGGCAGTCTAGAGGAGATCAGCATGTCCAAGCCCAGGTCCAGACCCCCGTCATGGACAGATCACCCGGTGTGGCTGGGGGTGGGCCAGGGAAAGGATGGTGAGACGGGCAGGGCCAGGGTGCCCCACACCTTccacatccacagctacaccaaGCCTACCGTGTGCCAGCACTGCCGCCACCTCCTCAAAGGCCTTTTCCGCCAAGGCCTGCAATGCGCTGacTGTAAGCTGAACTGCCATCGTCGCTGTGAGAGCTCCCTGGTCCCCGCGGACTgtcctggagagaggaggaacaccAATGGGGAAGGAGACTCAGTGTCCAGTCTCGGCTACAAGAACGACacagaggatgatgaggaggataTGAGCTTGAGTTTAACATCACTAGAAGACGATGACGACGAGCCGTCTACCGAGGTTCCATTTGCTGAGAACAAGGAAGTGGGACATCAGCCATCAATCATtccatGTTTCAGTAGTTATATTCCTCTAATGCGGGTCGTCCAGTCAGTCCGTCACACTAAAAGACAGGCCAGTGGAGTACTGAGAGAGGGTTGGCTACTGCATCACACCAACACTGACACACTGAGGAAACGTCATTACTGGATATTGGACTGGAAGAGTATCACTCTCTACCAGAACGAGATCAACACCAAGTACTACAAGgaGATTCCTCTATCTGAGGTGCTGCAGGTACGAGGCCCCGCCCAGTTGTCTGTCCCCTTGTTGCCCGGCAACAGTGCCCACTCCTTCGAAGTGGTGACGGGCACGCTGGTGTACTGTGTGTCGGCGGGCCGGGACGGACAGGCCTGGGAGACCGCCGTACGCCAGGCTCTGATGCCCGTGCTGAACAGTGGGCAGGTGGACAAACGGGGACAAGACCATGAACCCCAGAGTGGAAAAAACCCGgaTGTCAGCTCAGTGTATCAGATCTTCACTGATGAGGTGCTGGGTTCAGGACAGTTTGGAGTGGTGTATGGAGGCACCCACAGACAGTCTGGTCAGCCAGTGGCCGTCAAGGTCATCGACAAAACCCGTTTCCCTACCAAACAGGAGAGACAGTTGAGGAACGAGCAGGCAATTCTACAGaatCTGTCCCACCTCGGTATAGTTCTACTGGAGGGCATGTTTGAGACCATGGAGCACGTATTCATTGTCATGGAGAAGCTCCATGGAGATATGCTGGAGATGATTCTGTCCAATGAGAAGGGCCGACTGCCAGAGCGCACCACACGTTTCTTGGTTACACAGattctAGAGGCCCTGCGCTACCTGCACTTCAAACACATCGCTCATTGTGACCTGAAACCTGAGAATGTACTGCTGGCCTCCCCAGACTCTTTCcctcagGTAAAGCTGTGTGACTTTGGTTTTGCCCGCATCATCGGTGAGAAGTCGTTCCGCCGGTCGGTGGTGGGCACACCAGCCTACCTGGCACCCGAGGTCATCAGTAGCCATGGTTACAACCGCTCGCTGGACATGTGGGCGGTGGGTGTGGTCCTGTACGTCAGCCTGAGCGGAACGTTCCCCTTCAACGAGGACGAGGACATCAGACAACAGATCACCAACGCTTCCTTCATGTACCCCCGCCTGCCCTGGTCTAACATCTCACTAGAGGcggTGAGTCTTATCAACAACCTGCTCCAGGTTGCAGTAAGGTGTAGGTTCAGTGTGGGAAAAGCACTGGGACACCCCTGGTTACAGGACTTCCAGTTGTGGTGTGACCTGAGGGAGTTTGAGAAGAGAATGGGCTGTAGGTACCTGACCCACGAGGGGGACGACGACCGCTGGAGATGCCACGCCTTGGACAGGGGCCTGGTCTTCCCCTCTCACCTCACCTGGACCCCCGGGCACGATGACAGCCTGTGACCCTAGGCCCAAATGTCAAAGGTGAAGGGTCGGACAAGATGGCTTCtggactactggtgtgtttcagtGGTGTTCACCATAAACAACTGTCTGGATGCTGTTAGTGCTGTTATAGCAGTCTCGTAGAAAAAGATCACTGGAAGAGATGACGACTCCGGATTCGTGGACTTTATGGTGCCCTAGTGGTGCCAGCTCTTGTAGTGGTTATTTTTTAATAAATCATAATATTAAGA
>XM_021577809.2
GGTCCAGTTCCAGCTAGGCCTCTTCAGGGAGGTGGTATGGGTGCCTAGAGGGCAGCTCAGCTTTCACCACGCCAAGAGACTGGCGGCAGAGATCATAGAACGCAAGGATCAGCTGCTGTGACGGAGATGAAGATCCGCCCACACACCCTGGCTGTCCAATCATATCGCACCCCCACCTTCTGTCACCACTGTGGTGAGATGCTGTGGGGACTGATACGTCAAGGGTTAAAATGTGAAGGTTGTGGGTTAGACTTCCATAAGCGCTGTGCGCTGCAGTTGCCTAGTGACTGTAGCCGCGCACGGCGTCGTGTGTGTGGCCCCAGCCTGTCCCTGTTCCCCCCTGGCAGGCCCCGGACGCACTCCCTCTCCACACCTGCAGGAGGCAGTCTAGAGGAGATCAGCATGTCCAAGCCCAGGTCCAGACCCCCGTCATGGACAGATCACCCGGTGTGGCTGGGGGTGGGCCAGGGAAAGGATGGTGAGACGGGCAGGGCCAGGGTGCCCCACACCTTccacatccacagctacaccaaGCCTACCGTGTGCCAGCACTGCCGCCACCTCCTCAAAGGCCTTTTCCGCCAAGGCCTGCAATGCGCTGacTGTAAGCTGAACTGCCATCGTCGCTGTGAGAGCTCCCTGGTCCCCGCGGACTgtcctggagagaggaggaacaccAATGGGGAAGGAGACTCAGTGTCCAGTCTCGGCTACAAGAACGACacagaggatgatgaggaggataTGAGCTTGAGTTTAACATCACTAGAAGACGATGACGACGAGCCGTCTACCGAGGTTCCATTTGCTGAGAACAAGGAAGTGGGACATCAGCCATCAATCATtccatGTTTCAGTAGTTATATTCCTCTAATGCGGGTCGTCCAGTCAGTCCGTCACACTAAAAGACAGGCCAGTGGAGTACTGAGAGAGGGTTGGCTACTGCATCACACCAACACTGACACACTGAGGAAACGTCATTACTGGATATTGGACTGGAAGAGTATCACTCTCTACCAGAACGAGATCAACACCAAGTACTACAAGgaGATTCCTCTATCTGAGGTGCTGCAGGTACGAGGCCCCGCCCAGTTGTCTGTCCCCTTGTTGCCCGGCAACAGTGCCCACTCCTTCGAAGTGGTGACGGGCACGCTGGTGTACTGTGTGTCGGCGGGCCGGGACGGACAGGCCTGGGAGACCGCCGTACGCCAGGCTCTGATGCCCGTGCTGAACAGTGGGCAGGTGGACAAACGGGGACAAGACCATGAACCCCAGAGTGGAAAAAACCCGgaTGTCAGCTCAGTGTATCAGATCTTCACTGATGAGGTGCTGGGTTCAGGACAGTTTGGAGTGGTGTATGGAGGCACCCACAGACAGTCTGGTCAGCCAGTGGCCGTCAAGGTCATCGACAAAACCCGTTTCCCTACCAAACAGGAGAGACAGTTGAGGAACGAGCAGGCAATTCTACAGaatCTGTCCCACCTCGGTATAGTTCTACTGGAGGGCATGTTTGAGACCATGGAGCACGTATTCATTGTCATGGAGAAGCTCCATGGAGATATGCTGGAGATGATTCTGTCCAATGAGAAGGGCCGACTGCCAGAGCGCACCACACGTTTCTTGGTTACACAGattctAGAGGCCCTGCGCTACCTGCACTTCAAACACATCGCTCATTGTGACCTGAAACCTGAGAATGTACTGCTGGCCTCCCCAGACTCTTTCcctcagGTAAAGCTGTGTGACTTTGGTTTTGCCCGCATCATCGGTGAGAAGTCGTTCCGCCGGTCGGTGGTGGGCACACCAGCCTACCTGGCACCCGAGGTCATCAGTAGCCATGGTTACAACCGCTCGCTGGACATGTGGGCGGTGGGTGTGGTCCTGTACGTCAGCCTGAGCGGAACGTTCCCCTTCAACGAGGACGAGGACATCAGACAACAGATCACCAACGCTTCCTTCATGTACCCCCGCCTGCCCTGGTCTAACATCTCACTAGAGGcggTGAGTCTTATCAACAACCTGCTCCAGGTTGCAGTAAGGTGTAGGTTCAGTGTGGGAAAAGCACTGGGACACCCCTGGTTACAGGACTTCCAGTTGTGGTGTGACCTGAGGGAGTTTGAGAAGAGAATGGGCTGTAGGTACCTGACCCACGAGGGGGACGACGACCGCTGGAGATGCCACGCCTTGGACAGGGGCCTGGTCTTCCCCTCTCACCTCACCTGGACCCCCGGGCACGATGACAGCCTGTGACCCTAGGCCCAAATGTCAAAGGTGAAGGGTCGGACAAGATGGCTTCtggactactggtgtgtttcagtGGTGTTCACCATAAACAACTGTCTGGATGCTGTTAGTGCTGTTATAGCAGTCTCGTAGAAAAAGATCACTGGAAGAGATGACGACTCCGGATTCGTGGACTTTATGGTGCCCTAGTGGTGCCAGCTCTTGTAGTGGTTATTTTTTAATAAATCATAATATTAAGA
>TU1990607
TGGGGAGCAGAAACCAATGAATCAGCATTCAAATATTTTATTTCCTTATCCCTGGGCTAACGTTTTATCTGTGTGGAGGTAGAATCAGTCTCTCATTacgttgttctctctctctcgctttctctctctctcgcgctctctctctctcgctctctagcggTGAGTCTTATCAACAACCTGCTCCAGGTTGCAGTAAGGTGTAGGTTCAGTGTGGGAAAAGCACTGGGACACCCCTGGTTACAGGACTTCCAGTTGTGGTGTGACCTGAGGGAGTTTGAGAAGAGAATGGGCTGTAGGTACCTGACCCACGAGGGGGACGACGACCGCTGGAGATGCCACGCCTTGGACAGGGGCCTGGTCTTCCCCTCTCACCTCACCTGGACCCCCGGGCACGATGACAGCCT

Function

NR:

description
serine/threonine-protein kinase D3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021577808.2 False 2568 mRNA 0.57 18 41203290 41215745
XM_021577806.2 False 2898 mRNA 0.55 19 41203290 41215989
XM_021577809.2 False 2483 mRNA 0.55 17 41203875 41215989
TU1990607 True 404 lncRNA 0.53 2 41212394 41215752

Neighbor

gene id symbol gene type direction distance location
LOC110500431 LOC106608996 coding upstream 2169 41184269 ~ 41201121 (+)
LOC110500427 LOC106608994 coding upstream 19292 41130826 ~ 41183998 (+)
LOC110500425 LOC106608993 coding upstream 77356 41108446 ~ 41125934 (+)
LOC110500424 LOC106608992 coding upstream 144526 41050189 ~ 41058764 (+)
LOC110500419 LOC106608987 coding upstream 348147 40846992 ~ 40855143 (+)
LOC110500837 LOC106608998 coding downstream 8783 41224772 ~ 41247133 (+)
LOC110500434 LOC106609000 coding downstream 41334 41257323 ~ 41266367 (+)
LOC110500843 LOC106609004 coding downstream 368819 41584808 ~ 41601466 (+)
LOC110500443 LOC106608913 coding downstream 393261 41609250 ~ 41615747 (+)
LOC110500439 LOC106609016 coding downstream 427018 41643007 ~ 41672302 (+)
G1738185 NA non-coding upstream 29971 41173034 ~ 41173319 (+)
G1738182 NA non-coding upstream 35335 41167676 ~ 41167955 (+)
G1738174 NA non-coding upstream 51592 41151458 ~ 41151698 (+)
G1738173 NA non-coding upstream 52426 41150645 ~ 41150864 (+)
G1738172 NA non-coding upstream 54759 41148322 ~ 41148531 (+)
G1738265 zg57 non-coding downstream 134501 41350490 ~ 41351424 (+)
G1738291 NA non-coding downstream 174358 41390347 ~ 41525819 (+)
G1738303 NA non-coding downstream 257274 41473263 ~ 41480556 (+)
G1738824 NA non-coding downstream 311680 41527669 ~ 41535345 (+)
G1738829 NA non-coding downstream 322503 41538492 ~ 41538694 (+)
G1738119 NA other upstream 174154 41024710 ~ 41029136 (+)
G1738057 LOC100194703 other upstream 205970 40955050 ~ 40997320 (+)
G1737866 LOC103384823 other upstream 649437 40552011 ~ 40553853 (+)
LOC110500409 LOC106599480 other upstream 799605 40401452 ~ 40404840 (+)
G1737353 NA other upstream 1139965 40062706 ~ 40063325 (+)
G1739103 NA other downstream 672822 41888811 ~ 41897856 (+)
cxcl8c cxcl8c other downstream 1069067 42285056 ~ 42288500 (+)
si:dkey-185m8.2 LOC106608874 other downstream 1138588 42354556 ~ 42370239 (+)
G1739440 vax2 other downstream 1285360 42501349 ~ 42502357 (+)
G1740312 r1441 other downstream 2039664 43255653 ~ 43327738 (+)

Expression


Co-expression Network