LOC110500843 (LOC106609004)


Basic Information

Item Value
gene id LOC110500843
gene name LOC106609004
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 41584808 ~ 41601466 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110500843
ATGACCATCCCTGTAGTATCCAAGTCAGATGAAGGCTTCTATAAGTATGAATCTAATGAAGGAGAATTACCAGAGAgctgggtgacagtgagagGTGTAGGTGTTCCTCTGATCATCAACAAGAGAGTGGGGAACTCCGTGGAGCTGCAGGCAGGCTTAGAGACGGGACATTTAAAATCCTTGGAGTGGAAGTATATGGGAAAGGATATTGCAGAATTCAATTCAGAAGTTGTATATTCCCCTGCATCCCAGTTTGAGGGGAGACTAAAGATGAACACCCAAAACTTCAGTTTAACAGTCAGAGAACTGACACTGCAAGACTGATGGGATTTTCTACTTACAGTTGAAGGGGACAAAGGTCAGATTGGCAGTAAGACCATCACTCTGAAGGTCCACGGTAGGCTAGCCTATATCCAGACAGACATCAAGCTATTGGCCAACCACTCCTGTACGGTACGGCTGGTGTGTAACGTGTCCTGCTACCCCAACATTACCTACACCTGGGAAAGAGACAATGAGATCTACGGGGATGGCCAGCAgattcacttctctctctcaccagcaGAGAGAAACATCAATGTGAAGTGCAACGCCCCCAAACTAGTCAGTTGGAAAACTGCCTCTGCGACAGTAAAGTGTAGAAATGGCACAACCACCCCAGAATATGTGACAGGACTGGTGTGGTAAACCATCTACATTGGAATATCAGTAGGAGGCGCTGTGGTGCTGATCCTCACTGTAGCTGTGGCAGTGTGCTACTGCAGGGGCCGAAGTAACACAGACGCAGGAACTGTCCGGGTCCGGAAGACTTGCCAGAGGCTTAGAATGGAGCGTAACTCCTGGACCCTCTACATCAGTCCTAGTAGGCGGTTGTGGGTCTGGTTGTTGCTGGTGTTCTACTGGCCATTCTCCTGgcCCCACCAGCTCCAGAGCACCAACCTGGAAACCCAACAGGACCAAGGATCTACCCAGGGACGGGCTCTTGATGCTGAGAATACACATCTGCAGCATGGTGGCGCTAACATCTATGATACAATCACTCCCTCGGACAGTAATCACAGTGaaatGCCAGCTGATCCAAAAGAAAATCCAGTCTATTCTGAGATCAAGACAGGGAAGACCACAGCAGCAACTGGACCTGTTGATATGGCCAATGCTGAGGTTGACCTTAAACAGAAGGCCAAAGCCAGGAAGAAGAAAGAAACATCAACCCCACCCGAGGAAGATTCAGTCTATTCTCAATTGAAGCCAGGTACAGCCTCAGCAGCAGTAGGAAACAcatgctccaaaaccaccaccaTCAGACTGATCAACACAGTGACAGACCCCAAACACACCCACGTCTCATCATCTAACTCTCAAGCTGAGTGA

Function

NR:

description
LOW QUALITY PROTEIN: natural killer cell receptor 2B4-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110500843 True 1371 mRNA 0.49 12 41584808 41601466

Neighbor

gene id symbol gene type direction distance location
LOC110500434 LOC106609000 coding upstream 318441 41257323 ~ 41266367 (+)
LOC110500837 LOC106608998 coding upstream 337675 41224772 ~ 41247133 (+)
prkd4 LOC106608995 coding upstream 368819 41203290 ~ 41215989 (+)
LOC110500431 LOC106608996 coding upstream 383687 41184269 ~ 41201121 (+)
LOC110500427 LOC106608994 coding upstream 400810 41130826 ~ 41183998 (+)
LOC110500443 LOC106608913 coding downstream 7784 41609250 ~ 41615747 (+)
LOC110500439 LOC106609016 coding downstream 41541 41643007 ~ 41672302 (+)
LOC110500440 LOC106609014 coding downstream 74780 41676246 ~ 41688377 (+)
LOC110500441 LOC106609015 coding downstream 86979 41688445 ~ 41693821 (+)
LOC110500937 LOC106609011 coding downstream 148059 41749525 ~ 41755052 (+)
G1738831 NA non-coding upstream 43666 41540893 ~ 41541142 (+)
G1738829 NA non-coding upstream 46114 41538492 ~ 41538694 (+)
G1738824 NA non-coding upstream 49463 41527669 ~ 41535345 (+)
G1738291 NA non-coding upstream 58989 41390347 ~ 41525819 (+)
G1738303 NA non-coding upstream 104252 41473263 ~ 41480556 (+)
G1738892 NA non-coding downstream 118937 41720403 ~ 41720637 (+)
G1738893 NA non-coding downstream 120214 41721680 ~ 41722008 (+)
G1738924 NA non-coding downstream 167317 41768783 ~ 41769071 (+)
G1738925 LOC100380853 non-coding downstream 168035 41769501 ~ 41769847 (+)
G1739070 NA non-coding downstream 177361 41778827 ~ 41787548 (+)
G1738119 NA other upstream 555672 41024710 ~ 41029136 (+)
G1738057 LOC100194703 other upstream 587488 40955050 ~ 40997320 (+)
G1737866 LOC103384823 other upstream 1030955 40552011 ~ 40553853 (+)
LOC110500409 LOC106599480 other upstream 1181123 40401452 ~ 40404840 (+)
G1737353 NA other upstream 1521483 40062706 ~ 40063325 (+)
G1739103 NA other downstream 287345 41888811 ~ 41897856 (+)
cxcl8c cxcl8c other downstream 683590 42285056 ~ 42288500 (+)
si:dkey-185m8.2 LOC106608874 other downstream 753111 42354556 ~ 42370239 (+)
G1739440 vax2 other downstream 899883 42501349 ~ 42502357 (+)
G1740312 r1441 other downstream 1654187 43255653 ~ 43327738 (+)

Expression


Co-expression Network