LOC110500441 (LOC106609015)


Basic Information

Item Value
gene id LOC110500441
gene name LOC106609015
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 41688445 ~ 41693821 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021577819.2
AATTTATACTGTAGATTAATAGATTTGTCAGAAAATTCATGCTGAATGTACAATTCAAAGGAATAGTGTGGAATAACCTTTTATACTTGTGACTTTGACAAACTGTTTTTTGACACGTTTGTTAACAAAACGGAAGCCTAACCACAAATGACAGGATGTAGCCTCTGCATCAACTTGTCACTAGAAGGTGGAACAGTATCCATTTTGAAGGTCACATTTCAATATGGCATGTGTTGTTCTCGCTCTTCTTACAATCTTACCAGTGGTGATGGGAGATACCACTGGTTACCTGGGAGATTCGGTCACCTTGTCTTCTGGAGCCAACTCATCCTGGATCTTGAGCAAGATAGAGTGGTATATATTCAGCAACAACACCTGGATTGCAACGTACAGGAAAGAACCACACATTCTCAAAACAGACCGTTTCTGGCAGTTTCAGGGTCGTCTAAGACTCAACATCTCGTCCGGGGACTTAGAGATAAGAGATGTGAGGATAGGGGATGCCCTGGTTTACTCTGTTCTCCTGAAAGACTATAAGGGAGAGCAGCATAGCGTATCTGTCCAGCTCACTGTGAGAGAGCGTCTCAGCAAGCCCAGCGTCCGTAAGGTCTTCAGCATGTTGAAGCACAGCCATTGTGTGATGGCTCTTCAGTGCTCCTCTTCAGTGAAGGACACCCACCTCTCCTGGGAACCAGAGGCTGCGTTTGAGGATGCCTTCTGGAAGGGGAATCCCAACACCAACGTCTCTGTCGTCTGGACGTCTTACAGCCCCAACAGAAATGCCACCTTCACCTGTACTGCCAGCAATGGGCTCTCTAAAGCCTCCAGGGTTGTGACGGAGAGATGCCAAGaGCCCGACATGGTGGGAGAGACCCGCTTCCCTGGAATAGTTTTTCTAATGTTGCTCTTAGGAATTGTGTTTGGATGTGTTTTAACATATATTTGTTTTAGAGTTGAGTTAAAAGTATTCCCCGTACCAACTTTGTAAACTTTGTTTTCATGTGCATGATGCCTTGCttaaaattgatgtaaaaaatgaaaTTCGCTGCAGCTGATTTGCTTGGTCCTTTCTTGCTGCAGCTTTCTGCGGAGTAATTGACACAGGTTTTTTAACTGACAATTATCTTGGGTGTTATCCCCAGGGTTTGGAAGGCGGCCCGTGTTCTCCCTCTCCACAAAGGTGGTGAGATACCAAAcccggtctcagggatggctaactctggagATCCCTTCGATCTCCAATGAGTTAGGTAAATCTGATTTGAGTTATCTTGAACTTTACTTGTGGAAAGATCTCCAAGGCTTTCTAAAGTTGGGTGAATTGGGGCCTCTAGGGGCAATTCAAAAGGCTAATTGAGGACCTTTATACTGAAGAATGTATTTGTTTTCTATGACTGTTTAGCTTTTTGTATATTGATGTGCTTATGAACTGTATATTGATGTGCTTATGaactgtatattgatgtgtatacagGGTTCATCTTTAAAATAGACCTTGGTCTTAGCATGACTCCCTGTTCAAATAAAGCtgaattattattta
>XM_021577820.2
AATTTATACTGTAGATTAATAGATTTGTCAGAAAATTCATGCTGAATGTACAATTCAAAGGAATAGTGTGGAATAACCTTTTATACTTGTGACTTTGACAAACTGTTTTTTGACACGTTTGTTAACAAAACGGAAGCCTAACCACAAATGACAGGATGTAGCCTCTGCATCAACTTGTCACTAGAAGGTGGAACAGTATCCATTTTGAAGGTCACATTTCAATATGGCATGTGTTGTTCTCGCTCTTCTTACAATCTTACCAGTGGTGATGGGAGATACCACTGGTTACCTGGGAGATTCGGTCACCTTGTCTTCTGGAGCCAACTCATCCTGGATCTTGAGCAAGATAGAGTGGTATATATTCAGCAACAACACCTGGATTGCAACGTACAGGAAAGAACCACACATTCTCAAAACAGACCGTTTCTGGCAGTTTCAGGGTCGTCTAAGACTCAACATCTCGTCCGGGGACTTAGAGATAAGAGATGTGAGGATAGGGGATGCCCTGGTTTACTCTGTTCTCCTGAAAGACTATAAGGGAGAGCAGCATAGCGTATCTGTCCAGCTCACTGTGAGAGAGCGTCTCAGCAAGCCCAGCGTCCGTAAGGTCTTCAGCATGTTGAAGCACAGCCATTGTGTGATGGCTCTTCAGTGCTCCTCTTCAGTGAAGGACACCCACCTCTCCTGGGAACCAGAGGCTGCGTTTGAGGATGCCTTCTGGAAGGGGAATCCCAACACCAACGTCTCTGTCGTCTGGACGTCTTACAGCCCCAACAGAAATGCCACCTTCACCTGTACTGCCAGCAATGGGCTCTCTAAAGCCTCCAGGGTTGTGACGGAGAGATGCCAAGaCTTCATATCCGGTTTAAGTCGtaGCCCGACATGGTGGGAGAGACCCGCTTCCCTGGAATAGTTTTTCTAATGTTGCTCTTAGGAATTGTGTTTGGATGTGTTTTAACATATATTTGTTTTAGAGTTGAGTTAAAAGTATTCCCCGTACCAACTTTGTAAACTTTGTTTTCATGTGCATGATGCCTTGCttaaaattgatgtaaaaaatgaaaTTCGCTGCAGCTGATTTGCTTGGTCCTTTCTTGCTGCAGCTTTCTGCGGAGTAATTGACACAGGTTTTTTAACTGACAATTATCTTGGGTGTTATCCCCAGGGTTTGGAAGGCGGCCCGTGTTCTCCCTCTCCACAAAGGTGGTGAGATACCAAAcccggtctcagggatggctaactctggagATCCCTTCGATCTCCAATGAGTTAGGTAAATCTGATTTGAGTTATCTTGAACTTTACTTGTGGAAAGATCTCCAAGGCTTTCTAAAGTTGGGTGAATTGGGGCCTCTAGGGGCAATTCAAAAGGCTAATTGAGGACCTTTATACTGAAGAATGTATTTGTTTTCTATGACTGTTTAGCTTTTTGTATATTGATGTGCTTATGAACTGTATATTGATGTGCTTATGaactgtatattgatgtgtatacagGGTTCATCTTTAAAATAGACCTTGGTCTTAGCATGACTCCCTGTTCAAATAAAGCtgaattattattta
>XR_005038605.1
TTTATACTGTAGATTAATAGATTTGTCAGAAAATTCATGCTGAATGTACAATTCAAAGGAATAGTGTGGAATAACCTTTTATACTTGTGACTTTGACAAACTGTTTTTTGACACGTTTGTTAACAAAACGGAAGCCTAACCACAAATGACAGGATGTAGCCTCTGCATCAACTTGTCACTAGAAGGTGGAACAGTATCCATTTTGAAGGTCACATTTCAATATGGCATGTGTTGTTCTCGCTCTTCTTACAATCTTACCAGTGGTGATGGGAGATACCACTGGTTACCTGGGAGATTCGGTCACCTTGTCTTCTGGAGCCAACTCATCCTGGATCTTGAGCAAGATAGAGTGGTATATATTCAGCAACAACACCTGGATTGCAACGTACAGGAAAGAACCACACATTCTCAAAACAGACCGTTTCTGGCAGTTTCAGGGTCGTCTAAGACTCAACATCTCGTCCGGGGACTTAGAGATAAGAGATGTGAGGATAGGGGATGCCCTGGTTTACTCTGTTCTCCTGAAAGACTATAAGGGAGAGCAGCATAGCGTATCTGTCCAGCTCACTGTGAGAGAGCGTCTCAGCAAGCCCAGCGTCCGTAAGGTCTTCAGCATGTTGAAGCACAGCCATTGTGTGATGGCTCTTCAGTGCTCCTCTTCAGTGAAGGACACCCACCTCTCCTGGGAACCAGAGGCTGCGTTTGAGGATGCCTTCTGGAAGGGGAATCCCAACACCAACGTCTCTGTCGTCTGGACGTCTTACAGCCCCAACAGAAATGCCACCTTCACCTGTACTGCCAGCAATGGGCTCTCTAAAGCCTCCAGGGTTGTGACGGAGAGATGCCAAGGTACGGTCACTTCTAGGGCCAGGATTCTTTCCCCGGGAACACATGATCTGACCAGAAAAACAGTGGTGATTTCATCATTCTATGGGCAGGGAGTTCTTACGCTGGTCAAGCTTGCTGTTGTGTTTGAGAACAGTATTTGTCTTACAGTGAGGTATTTGGACAATGACACattttggttgtttcagattattttgtgccctatagaaatgaatggtaaataatgtattgtatcattttggagtcacttttattgtaaaaaaaaaagaaaaaagtagTGGGTGTGGTCAATGGCACAGTTTTAGAGGCTCTCCTCATGGCCGCATATACAAATGTTTTCCATTTtatagctaatttcctgcaattatacacattttgccatggcttacgCCGTGTCCTAATGCTATCTGAGTGACTTAAACATTAAAACAAAATCAATGGGTGCCCCATGCCATGACATTTTTGGAATTTCAGATTTTCAGATTTTTCTTATTTTGGTGATAGTTCTCAAAGatgatgttatttaaaaacattttgccccattatcttttctacagaCTTCATATCCGGTTTAAGTCGtaGCCCGACATGGTGGGAGAGACCCGCTTCCCTGGAATAGTTTTTCTAATGTTGCT
>XM_021577818.2
TTTATACTGTAGATTAATAGATTTGTCAGAAAATTCATGCTGAATGTACAATTCAAAGGAATAGTGTGGAATAACCTTTTATACTTGTGACTTTGACAAACTGTTTTTTGACACGTTTGTTAACAAAACGGAAGCCTAACCACAAATGACAGGATGTAGCCTCTGCATCAACTTGTCACTAGAAGGTGGAACAGTATCCATTTTGAAGGTCACATTTCAATATGGCATGTGTTGTTCTCGCTCTTCTTACAATCTTACCAGTGGTGATGGGAGATACCACTGGTTACCTGGGAGATTCGGTCACCTTGTCTTCTGGAGCCAACTCATCCTGGATCTTGAGCAAGATAGAGTGGTATATATTCAGCAACAACACCTGGATTGCAACGTACAGGAAAGAACCACACATTCTCAAAACAGACCGTTTCTGGCAGTTTCAGGGTCGTCTAAGACTCAACATCTCGTCCGGGGACTTAGAGATAAGAGATGTGAGGATAGGGGATGCCCTGGTTTACTCTGTTCTCCTGAAAGACTATAAGGGAGAGCAGCATAGCGTATCTGTCCAGCTCACTGTGAGAGAGCGTCTCAGCAAGCCCAGCGTCCGTAAGGTCTTCAGCATGTTGAAGCACAGCCATTGTGTGATGGCTCTTCAGTGCTCCTCTTCAGTGAAGGACACCCACCTCTCCTGGGAACCAGAGGCTGCGTTTGAGGATGCCTTCTGGAAGGGGAATCCCAACACCAACGTCTCTGTCGTCTGGACGTCTTACAGCCCCAACAGAAATGCCACCTTCACCTGTACTGCCAGCAATGGGCTCTCTAAAGCCTCCAGGGTTGTGACGGAGAGATGCCAAGGTACGGTCACTTCTAGGGCCAGGATTCTTTCCCCGGGAACACATGATCTGACCAGAAAAACAGTGGTGATTTCATCATTCTATGGGCAGGGAGTTCTTACGCTGGTCAAGCTTGCTGTTGTGTTTGAGAACAGTATTTGTCTTACAGTGAGGTATTTGGACAATGACACattttggttgtttcagattattttgtgccctatagaaatgaatggtaaataatgtattgtatcattttggagtcacttttattgtaaaaaaaaaagaaaaaagtagTGGGTGTGGTCAATGGCACAGTTTTAGAGGCTCTCCTCATGGCCGCATATACAAATGTTTTCCATTTtatagctaatttcctgcaattatacacattttgccatggcttacgCCGTGTCCTAATGCTATCTGAGTGACTTAAACATTAAAACAAAATCAATGGGTGCCCCATGCCATGACATTTTTGGAATTTCAGATTTTCAGATTTTTCTTATTTTGGTGATAGTTCTCAAAGatgatgttatttaaaaacattttgccccattatcttttctacagaCTTCATATCCGGTTTAAGTCGtgtaagtttacactgaaaaagcttgatgtagtcattgcatgctaggaatatgggtcCAAATACTAATCTTTTGACTACTTTACAACAACACAATTGTCACTTTCCAAATAtttttggacctgactgtatttctattctctccctgtctcctcagaGCCCGACATGGTGGGAGAGACCCGCTTCCCTGGAATAGTTTTTCTAATGTTGCTCTTAGGAATTGTGTTTGGATGTGTTTTAACATATATTTGTTTTAGAGTTGAGTTAAAAGTATTCCCCGTACCAACTTTGTAAACTTTGTTTTCATGTGCATGATGCCTTGCttaaaattgatgtaaaaaatgaaaTTCGCTGCAGCTGATTTGCTTGGTCCTTTCTTGCTGCAGCTTTCTGCGGAGTAATTGACACAGGTTTTTTAACTGACAATTATCTTGGGTGTTATCCCCAGGGTTTGGAAGGCGGCCCGTGTTCTCCCTCTCCACAAAGGTGGTGAGATACCAAAcccggtctcagggatggctaactctggagATCCCTTCGATCTCCAATGAGTTAGGTAAATCTGATTTGAGTTATCTTGAACTTTACTTGTGGAAAGATCTCCAAGGCTTTCTAAAGTTGGGTGAATTGGGGCCTCTAGGGGCAATTCAAAAGGCTAATTGAGGACCTTTATACTGAAGAATGTATTTGTTTTCTATGACTGTTTAGCTTTTTGTATATTGATGTGCTTATGAACTGTATATTGATGTGCTTATGaactgtatattgatgtgtatacagGGTTCATCTTTAAAATAGACCTTGGTCTTAGCATGACTCCCTGTTCAAATAAAGCtgaattattattta

Function

NR:

description
uncharacterized protein LOC110500441 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021577819.2 False 1543 mRNA 0.43 4 41688445 41693821
XM_021577820.2 False 1566 mRNA 0.43 5 41688445 41693821
XR_005038605.1 False 1481 mRNA 0.43 4 41688447 41693184
XM_021577818.2 True 2271 mRNA 0.41 3 41688447 41693821

Neighbor

gene id symbol gene type direction distance location
LOC110500440 LOC106609014 coding upstream 68 41676246 ~ 41688377 (+)
LOC110500439 LOC106609016 coding upstream 16143 41643007 ~ 41672302 (+)
LOC110500443 LOC106608913 coding upstream 72698 41609250 ~ 41615747 (+)
LOC110500843 LOC106609004 coding upstream 86979 41584808 ~ 41601466 (+)
LOC110500434 LOC106609000 coding upstream 422078 41257323 ~ 41266367 (+)
LOC110500937 LOC106609011 coding downstream 55704 41749525 ~ 41755052 (+)
trnan-guu-128 NA coding downstream 85046 41778867 ~ 41778940 (+)
trnan-guu-129 NA coding downstream 87387 41781208 ~ 41781281 (+)
trnan-guu-130 NA coding downstream 88560 41782381 ~ 41782454 (+)
trnan-guu-131 NA coding downstream 89732 41783553 ~ 41783626 (+)
G1738831 NA non-coding upstream 147303 41540893 ~ 41541142 (+)
G1738829 NA non-coding upstream 149751 41538492 ~ 41538694 (+)
G1738824 NA non-coding upstream 153100 41527669 ~ 41535345 (+)
G1738291 NA non-coding upstream 162626 41390347 ~ 41525819 (+)
G1738892 NA non-coding downstream 26582 41720403 ~ 41720637 (+)
G1738893 NA non-coding downstream 27859 41721680 ~ 41722008 (+)
G1738924 NA non-coding downstream 74962 41768783 ~ 41769071 (+)
G1738925 LOC100380853 non-coding downstream 75680 41769501 ~ 41769847 (+)
G1739070 NA non-coding downstream 85006 41778827 ~ 41787548 (+)
G1738119 NA other upstream 659309 41024710 ~ 41029136 (+)
G1738057 LOC100194703 other upstream 691125 40955050 ~ 40997320 (+)
G1737866 LOC103384823 other upstream 1134592 40552011 ~ 40553853 (+)
LOC110500409 LOC106599480 other upstream 1284760 40401452 ~ 40404840 (+)
G1737353 NA other upstream 1625120 40062706 ~ 40063325 (+)
G1739103 NA other downstream 194990 41888811 ~ 41897856 (+)
cxcl8c cxcl8c other downstream 591235 42285056 ~ 42288500 (+)
si:dkey-185m8.2 LOC106608874 other downstream 660756 42354556 ~ 42370239 (+)
G1739440 vax2 other downstream 807528 42501349 ~ 42502357 (+)
G1740312 r1441 other downstream 1561832 43255653 ~ 43327738 (+)

Expression


Co-expression Network