LOC110500937 (LOC106609011)


Basic Information

Item Value
gene id LOC110500937
gene name LOC106609011
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 41749525 ~ 41755052 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021578441.2
CTGATCAACACAGTGACAGACCCCAAACACACCCACGTCTCATCGTCTAACTCTCAAGCTGAGTGAAGGGGTATTTTCAGAGAGCAACTAGAGAATGTGACTTCCTTTTCAGCTAACATACAATCATAATTTTATAGAACAGCAGCCGTCATCAAAAGGACGTCTCTGCTCTTTCTCTACACTACTATTCCTTCTCTGTGTGTATCGGTTAGTCAACCGCTAGCTACCAGTGACAGTGATAGATAAGTACATACAGCCAGAGGAAACAGTCAAAGCCTTAAAGAGATGTCTGGTGgtcccttctcctccttctccaaacaggGAATACTGCTTCTCCTACTCTCCAACCTCCACTATGTTGTGGGTGTTCCTCTGATCATCAACAAGAGAGTGGGGGACTCCGTGGAGCTGCTGGCAGGCTTAGAGACAGAACATATAAAATCCTTGGTGTGGAAGTTTATGGGAAAGGATATTGCAGAATTCAATTCAGAGGTTGTATATTCACCTGCATCCCAGTTTGAGGGGAGACTAAAGATGAACGCCAAAAACTACAGTTTAACAGTCAGAGAACTGACACTGCAAGACTCAGGTGATTTTCTACTTACAGGTGAAGAGGACAAAGGTCAGATTGGCAGTAAGACCATCACTCTGAAGGTCCACGAGTCTATATCCAAGGTGGTGATCCACACAGACATCAAGCTATTGGCCAACCACTCCTGTACGGTACGGCTGGTGTGCAACGTGTCCTCCGACCCCAACATTACCTACACCtgggagagagacaatgagatCTACGGGGACGCCCAGCAgattcacttctctctctcaccagaaGAGAGAGACATCAGTGTAAAGTGCAACGCCTccaacctagtcagttggaaaacTGCTTTTGAGATGGCAAAGTGTAGTAATGACACAACCACCCCAGGACTGACATGGTATACCATCTACATCGGAATATCAGTAGGAGGCGCTGTGGTGCTGATCCTCACTGTAGCTGTGGCGGTGTGGTATTGCAGGGGACGAAGTAACACAGCAGATCTACCTGACAACACAATATATGCTGATGTTATGATCAACACAAGAAGTAGAGATACAAGATCAAACAGTCATGTAAACCCAATATCCTTCTATGAAACTGTCAATGATCTGGTTATCCCAAGATTGAACAAGCCGCAGACTCTGTATGATAAGATCGCGTTTGGACGCCCAGAAGGACCCCAGTCTCCCTACCAGAATGTACTGTGAGCTGAACAGGATGTGGTCATAGGTTGGGCCTCCCATAGATATGGAACCCTCTGCATGCTCTGCATCTTACACGTGTACTTTCTGTAGATAGGCCTAGACTTTACTGTCTATTTGCTTACTTTAACTTCTTTCTCCTTTTGATGATTctcatatatacagtatgtcataaGGCCTTATGCCTTTCTTTGAAGGCCTAGTTACaattacagtgcattgcgaaagtatttgtcccccttgaactttgcgaccttttgccacatttcaggct

Function

NR:

description
SLAM family member 8-like

GO: NA

KEGG:

id description
K16853 SLAMF8, CD353; SLAM family member 8

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021578441.2 True 1519 mRNA 0.45 7 41749525 41755052

Neighbor

gene id symbol gene type direction distance location
LOC110500441 LOC106609015 coding upstream 55704 41688445 ~ 41693821 (+)
LOC110500440 LOC106609014 coding upstream 61148 41676246 ~ 41688377 (+)
LOC110500439 LOC106609016 coding upstream 77223 41643007 ~ 41672302 (+)
LOC110500443 LOC106608913 coding upstream 133778 41609250 ~ 41615747 (+)
LOC110500843 LOC106609004 coding upstream 148059 41584808 ~ 41601466 (+)
trnan-guu-128 NA coding downstream 23815 41778867 ~ 41778940 (+)
trnan-guu-129 NA coding downstream 26156 41781208 ~ 41781281 (+)
trnan-guu-130 NA coding downstream 27329 41782381 ~ 41782454 (+)
trnan-guu-131 NA coding downstream 28501 41783553 ~ 41783626 (+)
trnan-guu-132 NA coding downstream 29675 41784727 ~ 41784800 (+)
G1738893 NA non-coding upstream 27517 41721680 ~ 41722008 (+)
G1738892 NA non-coding upstream 28888 41720403 ~ 41720637 (+)
G1738831 NA non-coding upstream 208383 41540893 ~ 41541142 (+)
G1738829 NA non-coding upstream 210831 41538492 ~ 41538694 (+)
G1738824 NA non-coding upstream 214180 41527669 ~ 41535345 (+)
G1738924 NA non-coding downstream 13731 41768783 ~ 41769071 (+)
G1738925 LOC100380853 non-coding downstream 14449 41769501 ~ 41769847 (+)
G1739070 NA non-coding downstream 23775 41778827 ~ 41787548 (+)
G1739078 NA non-coding downstream 43871 41798923 ~ 41799152 (+)
G1739115 NA non-coding downstream 165547 41920599 ~ 41926648 (+)
G1738119 NA other upstream 720389 41024710 ~ 41029136 (+)
G1738057 LOC100194703 other upstream 752205 40955050 ~ 40997320 (+)
G1737866 LOC103384823 other upstream 1195672 40552011 ~ 40553853 (+)
LOC110500409 LOC106599480 other upstream 1345840 40401452 ~ 40404840 (+)
G1737353 NA other upstream 1686200 40062706 ~ 40063325 (+)
G1739103 NA other downstream 133759 41888811 ~ 41897856 (+)
cxcl8c cxcl8c other downstream 530004 42285056 ~ 42288500 (+)
si:dkey-185m8.2 LOC106608874 other downstream 599525 42354556 ~ 42370239 (+)
G1739440 vax2 other downstream 746297 42501349 ~ 42502357 (+)
G1740312 r1441 other downstream 1500601 43255653 ~ 43327738 (+)

Expression


Co-expression Network