XLOC_036288 (bgna)


Basic Information

Item Value
gene id XLOC_036288
gene name bgna
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 14104496 ~ 14126646 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00070924
tttttttcccctttttttgcAAGCTGTCCTGTATTTTGAATTGCAGGTACTTCTCAGTGCTATGCGACTGCTGGCAGCCGAGGACATAATAGACAGTAATCAAAAACAATGATCAAACCTTAAAATCTGCTTGCCATCAGAAACCTCAAACGGAAGAATTCATCTCCAGATATATCTCACACAGCAGATTAAAAAGTAGCAGCCATGTTGTCAGTCTGTGTGGCGTTTCTGTTTCTCTGCACTGCCCACCTACCAATATACTCCAGTGCTCTTCCCTTCGAGCAGAAAGGATTCTGGGACTTTGGCAAAGATATCGATGTGAAagagctgatgatgatgatggaccAGGAAGAAGGGTCTGCCGTGGAGCCATATAAACCTGAACATCCCACATGTCCATTCGGCTGTCGGTGCGAGCTCAGAGTCGTACAGTGCTCAGATTTAGGTTTAGGTTATGTGCCATATGATATTCCTGCAGACACACTGCTGTTGGACCTGCAGAGCAATAGGATCACAGAGATTAGGGAGGGAGACTTTAAGGGACTCTCCAACCTCTATGCCCTGGTCTTAAGATATAACCAGATCTCCAAAATTCATCCAAAGGCATTCCTCCCTTTGAAACGTTTGCAGAAGTTATACATTTCACACAACCTTCTGACATCCATGCCCAAAAACCTGCCTTCATCTCTAGTGGAGCTGCGGATCCATGACAATCGCATCAAGAAAGTGCCGGCATTTAGCTTCTCAGGCCTTCACAACATGCATGTCATTGagATGGGTCGTAATCCACTCCAGAACAGTGGTTTTGAACCCGGAGCATTTATGGGTCTTAAACTGAACTACTTGCGTATTTCCGAAGCAAAACTCACTGGGGTTCCCAAAGACCTTCCCGGCAGTCTTCATGAACTTCATTTGGACAATAATCAGATTCAAGCCATTGAGCTGGTGGATCTCAGCCAGTACACCCAGCTGCAAAGGCTGGGACTTGGCAGTAACCAGATTCGCCACATTGAGCACGGTGCTTTATCTTACCTCACCAACCTGAGAGAGCTGCACCTCGACAACAACCGCCTACCCAGTGTGCCCAGTGGTTTGTCTCATATGAAGTATCTGCAGGTTGTTTACCTTCATTCAAACAACATCACCAATGTTGGGGAGGATGACTTCTGCCCTACAGGATTCGGGCTGAAGAAGGTCTTCTACAACGGCATCAGTCTGTTTGACAACCCAATCAGGTACTGGGAGGTGCAGCCCTCTACGTTCCGCTGCGTCAGTGACCAGATGGCCGTACAGTTTGGCAACCACAAGAAATAAACCACTAACAAAACCAATCCAAGAGGAGAACAAGACAAAAATGAGCCCATAATTTGTGTAAATCGTCAAGATATTTGAGCGAATAAGATGTACAGAGGCATAAATCAGAAGAAACGTGGACTTCATTTAAACAAAGGTGGTTGTATAACCACTGGTGTATTCAAAACTATTGATGTGTGTGTAATTCCCTgctaacattaatgaatatgtACTCCACAAGAAGTGCCTTTTTTGATCAGTTTAGTTGACTTGAAATATCTAACAGCTTCATTTGCTTAGTTTCGATTGATTGCGTCTTTAACTAATGAGATAAATTCTCAGTTTGTCATTCTGGCTGGCTGATTGTCCCTCATTCATTATTGTAATACTGTAATAAAGTGGATTTATTACGTGGATCACAAAACA
>TCONS_00070925
GCAGATTAAAAAGTAGCAGCCATGTTGTCAGTCTGTGTGGCGTTTCTGTTTCTCTGCACTGCCCACCTACCAATATACTCCAGTGCTCTTCCCTTCGAGCAGAAAGGATTCTGGGACTTTGGCAAAGATATCGATGTGAAagagctgatgatgatgatggaccAGGAAGAAGGGTCTGCCGTGGAGCCATATAAACCTGAACATCCCACATGTCCATTCGGCTGTCGGTGCGAGCTCAGAGTCGTACAGTGCTCAGATTTAGGTTTAGGTTATGTGCCATATGATATTCCTGCAGACACACTGCTGTTGGACCTGCAGAGCAATAGGATCACAGAGATTAGGGAGGGAGACTTTAAGGGACTCTCCAACCTCTATGCCCTGGTCTTAAGATATAACCAGATCTCCAAAATTCATCCAAAGGCATTCCTCCCTTTGAAACGTTTGCAGAAGTTATACATTTCACACAACCTTCTGACATCCATGCCCAAAAACCTGCCTTCATCTCTAGTGGAGCTGCGGATCCATGACAATCGCATCAAGAAAGTGCCGGCATTTAGCTTCTCAGGCCTTCACAACATGCATGTCATTGagATGGGTCGTAATCCACTCCAGAACAGTGGTTTTGAACCCGGAGCATTTATGGGTCTTAAACTGAACTACTTGCGTATTTCCGAAGCAAAACTCACTGGGGTTCCCAAAGACCTTCCCGGCAGTCTTCATGAACTTCATTTGGACAATAATCAGATTCAAGCCATTGAGCTGGTGGATCTCAGCCAGTACACCCAGCTGCAAAGGCTGGGACTTGGCAGTAACCAGATTCGCCACATTGAGCACGGTGCTTTATCTTACCTCACCAACCTGAGAGAGCTGCACCTCGACAACAACCGCCTACCCAGTGTGCCCAGTGGTTTGTCTCATATGAAGTATCTGCAGGTTGTTTACCTTCATTCAAACAACATCACCAATGTTGGGGAGGATGACTTCTGCCCTACAGGATTCGGGCTGAAGAAGGTCTTCTACAACGGCATCAGTCTGTTTGACAACCCAATCAGGTACTGGGAGGTGCAGCCCTCTACGTTCCGCTGCGTCAGTGACCAGATGGCCGTACAGTTTGGCAACCACAAGAAATAA

Function

symbol description
bgna Predicted to be located in extracellular region. Predicted to be active in extracellular space. Is expressed in cleithrum. Human ortholog(s) of this gene implicated in Meester-Loeys syndrome and X-linked spondyloepimetaphyseal dysplasia. Orthologous to human BGN (biglycan).

GO:

id name namespace
GO:0005576 extracellular region cellular_component
GO:0005615 extracellular space cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-040704-74 Predicted to be located in extracellular region. Predicted to be active in extracellular space. Is expressed in cleithrum. Human ortholog(s) of this gene implicated in Meester-Loeys syndrome and X-linked spondyloepimetaphyseal dysplasia. Orthologous to human BGN (biglycan).

Ensembl:

ensembl_id ENSDARG00000017884

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00070924 False 1719 mRNA 0.44 8 14104496 14126646
TCONS_00070925 True 1131 mRNA 0.48 7 14104901 14121634

Neighbor

gene id symbol gene type direction distance location
XLOC_036287 si:ch211-229n2.6 coding downstream 179 14096167 ~ 14104317 (-)
XLOC_036286 BX248385.1 coding downstream 9980 14092794 ~ 14094516 (-)
XLOC_036285 si:ch211-229n2.7 coding downstream 12610 14085894 ~ 14091886 (-)
XLOC_036284 dedd coding downstream 23962 14058185 ~ 14080534 (-)
XLOC_036283 atp2b3a coding downstream 52147 14003232 ~ 14052349 (-)
XLOC_036289 si:dkey-6n6.1 coding upstream 3599 14130245 ~ 14151051 (-)
XLOC_036290 rhoaa coding upstream 43921 14170567 ~ 14184423 (-)
XLOC_036291 def6a coding upstream 58649 14185295 ~ 14209852 (-)
XLOC_036292 sin3b coding upstream 85100 14211746 ~ 14239023 (-)
XLOC_036293 xpr1a coding upstream 117830 14244476 ~ 14375890 (-)
XLOC_036279 CT025854.2 non-coding downstream 226651 13877728 ~ 13877845 (-)
XLOC_036277 NA non-coding downstream 387919 13714942 ~ 13716577 (-)
XLOC_036263 NA non-coding downstream 798448 13302679 ~ 13306048 (-)
XLOC_036261 BX119975.1 non-coding downstream 865404 13238973 ~ 13239092 (-)
XLOC_036294 BX294388.2 non-coding upstream 287707 14414353 ~ 14452438 (-)
XLOC_036296 NA non-coding upstream 348123 14474769 ~ 14482457 (-)
XLOC_036297 NA non-coding upstream 364647 14491293 ~ 14495346 (-)
XLOC_036300 NA non-coding upstream 656568 14783214 ~ 14790721 (-)
XLOC_036301 NA non-coding upstream 951390 15078036 ~ 15081665 (-)

Expression


Co-expression Network