LOC110500845 (LOC106608891)


Basic Information

Item Value
gene id LOC110500845
gene name LOC106608891
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 41942621 ~ 41975186 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021578376.2
AAAAGACATGACCGTCTCGTTTGTGCGCACGAGGGGTCTCAAAGCATTGATGACATACAGCGGGAGAGAAGCATCCGCCGGACAGAGGGGCAATCAAATGTAAAACGAACGATTCCATCCTGCAGCGTTTCCATAGCACTAGCCTCCTATACAGTTATTTTGATGTTTCTATCACGAATGAATCGATGACGAAGAAGAATAAGAAGGAAAGGGAAGATTGGAGGAGATTCGCTTCTCTCATAACGGGGTACCGGTGAAAGAGGGGCAGTAGCCTACCTATTAGTCAAAAACGTCAAACGAGAATAGCCGCACCATCATCAATCGCGTCTGTTTGTCGTGAGATGACAAAGTGAAGTGGCGGATCATGTCTCAGAAGAAGATATTTCTGGTCTTTGTGGCAATCAGTACCGTCAGCCTACTGCTGCACCATGGGGGCCATTTCAgctgGACGATGGAAGCCTTTCACCTCGGCTGTCCGTCACTACGCACccacctgtcctcctctctcaaGCCCAAACACACCAACGTGGCCTTCCTCAAGACGCACAAGACGGCCAGCACCACCATGCAGAATCTGCTCTTCCGCTTCGCAGAGCGCAACAACCTGACAGTAGCGCTCCCTGTGCAGGCCTGCGGACACCAGTTCTGCTACCCGCGCACCTTCAACGCCCACCTCGTCCACCCGCACACACTGCCACCCAACGTGGTCACCAGCCACATGCGCTTCAACCGTGCCGAGATGCAGCGCCTCATGCCTAATGATACCATCTACGTGACCATACTTCGAGAACCAGGGTCCATGTTTGAATCGTTGTTCAGTTACTATAACCAGTACTGTCAGAGTTTTAAGAGAGTTCCCAATGGGTCCCTGGAGGCATTTCTGGACGAGCCGTGGCGGTACTACCGTCCGGACGAAAAGGACTCCATGTACGCCCGTAACACGCTGACCTTTGACCTAGGTGGGGACAAGGACCGTCCGGCGGCAGACGCAACAGCGTACGCCCGGGCCTTTGTGGccgagacagaacgcgtcttctccCTGGTGATGATCGCCGAGTACTTTGACGAGTCGCTAGTCCTCCTCCGTCACCTTCTCTCCTGGGATCTGGAAGACGTGCTCTACGTCAAGCTGAACATGCGAATGTCCGGCTCCAAGCACAGCCTCTCGCCAGGCCTCCCCTTCAAGATCCGCGCCTGGAACGCCTTGGATGCACGCCTCTATGATCACTTCAACGCCTCCCTGTGGCGCCAGCTGACTGCCCTGGGCCCGGCGTGCGTGGCCAGGGAGGTGCGGTTGCTCCGCAGGGCCCAGGAAAGGCTTGTGAGGGGCTGCTTTGGAGGACGGCTTCCCCAGCTCCGCTCTGCTGCCCAGATCAAGAACAAGGAGCTGCGGCCGTGGCAGCCCAGTGCAAAGGTGGACATCGTGGGCTACGACCTGCCGACCAACACCAACGCCACGTGGCCCGGAAGTCTGGCCCACGAGCTGTGTCTGAAGCTCATCATGCCAGAGGTCCAGTACACCAGGGTCCTGCTTCGATCGCAGTCGCTACGCTACAGACGCAGCTACCCGCTCCGCTCCCCTCAGCCCCAGCCGCAGCAGCCCGTACGGTCGGTCCTGCCACGCCACCAACAGGTGGGGATACAGCAGATACACCGGGAGGCCCTTCCTCCAGGACTTGGTCCCGCCTCTAGCCCCACAGCCACCTCTCAACCTGCAGGGACCCAGAGCAGGGCCACCAGGGTGGGGCTAAGGCCCTCGGGCCCCCAGAGGCAGACGCCATAACTTAAGACTGCAGCACCAGCCTTGAATATAGACAGACTGAATACAGCCAGACTAAATAcaggcatgcagacagacagacagactgtcctCCAGACTTCAGCCATTTGTCCCCAGGGACTGTATCAGGGGGTTCTggaggagatagggagagggggggacaCCCCCAGATTGGGGCTGGAGATTGGGGTAGGACCCCATCATTATGGGCACAGGCAGAGCACTCTCATTAATTACAAACTCTGTATGGAACAATAAAGAACTGTTACTCTCGctttatctctctcactctctaatgccacccccaccccctcccaaACCTTGAGAAGATCTTGATGATGACAGTGAGAGGGTCAGCGCTCCGGGTCCGTGTCCAACCCTCTAAGCCTTCTCCAGAGAGGAAAACCATCCAGTCCTGGGCCTCTCACCCAATGACTTTACCCCCTCCCACTGAGTGTTAGGCCCCAGGACAGGTCAAATGTCAAAAGTTAGGCCAGTGGTCCTTAGACtgaccccccgccccccccccacacacacacacactcgcagccCTTACACcaactctctccctcctgcccacCCTGCTTTAGAAcatttctctctgcttctccgaccccagctcatctctctctcccctccaccagCAACTGAACTAGACCATGGCGGCTGCTGCTGACAAATGGGATGTTTTTAGATAtgggaattgtgtgtgtgtgtgaaagcgtTTTTCctatgtattttatttatctgGGGCGTTATCGCAATAAAGTTTTATGTAAAGGTAGGGATCTTATAaccacaagacacacacacacaccggactcaACCCGTTGTTGGTTCTGCAAGCCTGCTAAAAGACATGATGAGTGAGAGCTACAGTGTTTGAATATTTAATTATGTATTCTTAATGAGGCTCTCTTTGGAGAGACCTTCCACttgggttacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacagcaatgtgGAACTTGCCAAAGCAGCTTACTTATCCGAAGCAAAGCATAAGGAGGAAATAACTACGAAACTGGGGGAAAGCAGTAGAAGAAGAGAGAGTCTGGGTCCTGTTCATTTGGACACACTgtggaaaacattttaaaacattttgcaatgggaaTTCGAAAAATATGTGTTTCTTCTTCGACAACTCCATATACTATTTATTCCCTTCCTGTTTCAGTCCTTGGTCtcccatttggtgcctaatgaacatggccCTGGTGTGGTGGCTGTCATGTGGAGGTGTTTTGCCACTCGTTTCATTATGTGGTACATTTTTTATGCAGTTGGTTGTTCATGTTTAACCTAAATGGTATGCTTCGACCTGGGTGTCcttgacggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttgtgtttctgagtatatattatttattctcttcatcactggaaaaaaACAGTCTGTTTATGTTTACCTTCAATGTATATTTCCGATTTTGGAACAGGACATTGTATTGTGGACCAAATCACTAATGGCAATACACACTGTGCTGTACATGGCATGTTCTGATGAATAAAATGTAAATTTCTACATAGGCCAACCACAAAAGCTACTCAGACAGCACCAAGTGTAATCACTGAGGCATGAATTTTATTGTGTTTTAAGTGCTTCATAATGCTCTagtgtgcatcccaaataacagcctattccctacattgtgtattatttgtagtgcactatgtagggaatagggtgccatttcagttCTAGTCTAGTGGAAAGAGGACAGGGTAGAAAGATAACTTTCCGAAGAGCCCTTGACCCGTGAAATCCTCCATGTTTGACTGCTGTTCATTTTTTAAAGTGCTCTTTGATTGTACTTTATTtttcatcccaaatgtcaccctttaaatagggaataggttgccatttgggacacaaggtATCAAATCTAGGCTGGTTTCTCGGTTTTTAGAAACATAACTAACACAGAATGGTGGTTGTGTCACCTACAAGTCAGTGTTAGCAAGCCTTTTTAGGAATGCtagaattaagcaataaggcccgagggggtgtggtatatggccaatataccatggctaagggctgttctaaagcacgatgcaacgcggagtgcctggacacagcccttagccgtggtatattggccata

Function

NR:

description
galactose-3-O-sulfotransferase 3-like

GO: NA

KEGG:

id description
K09676 GAL3ST3; galactose-3-O-sulfotransferase 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021578376.2 True 4087 mRNA 0.51 3 41942621 41975186

Neighbor

gene id symbol gene type direction distance location
trnan-guu-197 NA coding upstream 62787 41879761 ~ 41879834 (+)
trnan-guu-196 NA coding upstream 65477 41877071 ~ 41877144 (+)
trnan-guu-195 NA coding upstream 66644 41875904 ~ 41875977 (+)
trnan-guu-194 NA coding upstream 70873 41871675 ~ 41871748 (+)
trnan-guu-193 NA coding upstream 72034 41870514 ~ 41870587 (+)
LOC110500448 LOC106608889 coding downstream 31129 42006315 ~ 42052638 (+)
trnas-gcu-263 NA coding downstream 113483 42088669 ~ 42088750 (+)
trnas-gcu-264 NA coding downstream 115454 42090640 ~ 42090721 (+)
LOC110500450 clcn3 coding downstream 144086 42119272 ~ 42185004 (+)
LOC118942801 NA coding downstream 145205 42120391 ~ 42132326 (+)
G1739131 NA non-coding upstream 5245 41935433 ~ 41937376 (+)
G1739115 NA non-coding upstream 15973 41920599 ~ 41926648 (+)
G1739078 NA non-coding upstream 143469 41798923 ~ 41799152 (+)
G1739070 NA non-coding upstream 155073 41778827 ~ 41787548 (+)
G1738925 LOC100380853 non-coding upstream 172774 41769501 ~ 41769847 (+)
G1739093 NA non-coding downstream 138130 42113316 ~ 42120480 (+)
G1739245 NA non-coding downstream 147204 42122390 ~ 42123986 (+)
G1739084 NA non-coding downstream 167167 42142353 ~ 42143265 (+)
G1739286 LOC106608879 non-coding downstream 252928 42228114 ~ 42228789 (+)
G1739288 NA non-coding downstream 253929 42229115 ~ 42229351 (+)
G1739103 NA other upstream 44765 41888811 ~ 41897856 (+)
G1738119 NA other upstream 913485 41024710 ~ 41029136 (+)
G1738057 LOC100194703 other upstream 945301 40955050 ~ 40997320 (+)
G1737866 LOC103384823 other upstream 1388768 40552011 ~ 40553853 (+)
LOC110500409 LOC106599480 other upstream 1538936 40401452 ~ 40404840 (+)
cxcl8c cxcl8c other downstream 309870 42285056 ~ 42288500 (+)
si:dkey-185m8.2 LOC106608874 other downstream 379391 42354556 ~ 42370239 (+)
G1739440 vax2 other downstream 526163 42501349 ~ 42502357 (+)
G1740312 r1441 other downstream 1280467 43255653 ~ 43327738 (+)
LOC110500499 ubil other downstream 1292028 43267057 ~ 43268143 (+)

Expression


Co-expression Network