LOC110500448 (LOC106608889)


Basic Information

Item Value
gene id LOC110500448
gene name LOC106608889
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 42006315 ~ 42052638 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036957880.1
ACACAATCACTACAGAACTTCTCACGCTATGATACAACGGCGCATTCCCGAAAAGACCATTCACAGCATGGCACTCACTGAAAGAGAGACTTTCGCCAAAGGGCAAATGTTGCGGTTATCTGTATCCCCAAATCCCATGGATTTTTAACTGAACAGGAAAAAACACCCAACGAACATCAAGTTAAGCATCTTAAGAAGAATATAAAAAATAGGATAGCAGAGATGCAGGGGGACCTGGGCACCCAGAGGAGTTTCAGTGTGTTGGACcgcctcctccacacacaccctaTCTGGCTGCAGCTGTCAATCAACGCTGACTCCGCCCTCTACATCTTGCTCAGAGAACCTGTCGGGACGTTCCTGGTGCGTAAATGCAGCTCCAGCCAGAGGAAGATGTTGTGTGTCCGAGTGACAGCTGACAGGGCAGCGTCCTCCATCAAGGAGTGTCTCATATGTGAGGAGGACTCAACCTTCGCCCTGGAGAGCTCCGCCCTCAGCTTCCCAGACCTCTGCCGATTGGTGGCCTTCTACTGCATCAGCAGAGATGTGCTGCCTTTCCCTTTGGAGCTTCCAGAAGCCATTGCTCAGGCCTCTTCCCACAGAAAGCTGGAGGCCATCTCTCATATGGGATTAGAGTTCTGGTGTCCCCTGTCTGACACCCAGAATGGACCAGGGGACCGGCAGGCTCCACCCACCATCATTAAGGCCCCACCCAGCACCACCAAGACTCCACCCATCAGTGCCACCCAGGTCAAGGCAGGTCTGTCCCAGGACCTGTGTTACCTGCTGTCCTGCGGCAGACAGGAGTCTCTCTGCTTCATCAACCCACTCTTCCTACAGGTGGAGcagcagcagcaacagcagccaACCCAGGTGGCGTCACACAAACGCCACCGCTTCAAACGCAGTATGAGGGTCCGTGTCTCCACCGAGAGCTCCATGACTCTGTCTGGTGGTGGGGGGGCTGGGTCGTTCCCTTCCTCAGTTCCAGAAGAACCCCAGGACCAGGAGAGGCTCCAGCCCACCCCCCTCCAGCCCAGTCCCAACCCACACAGGAAGATCCATCCTGGGGCTGGCGTCCTGAGGAGGACCCCTGCACTGTCCCCGACGTCGGCAGAAGATGAGGATCTCGTGCCAATAAATGTACCGCCACCGGTAAAGGCTCCAACAGAACAGGTGGTGGAGGTAGAAGAGGACCTTCCTGCTCCAGAGGAGCCTAGCATCGAGGTGGCGTGCCTAGCCTTGGAGGGCCGCCCGGCCCCCTCTCTGGCCGAACTGGACAGCAGCAGCTCATTCAGCAGCCTGGAGGAAGAGGAACCAGAACCAGAGGACCAGTTCTTTAAACAACCAAACCACAACCCCCAGCACCGCCCGCCCATGGTGCGCTCACGGGGGGGCCACGGAGGCCTCCACAGGATGAGTGCGGCGTTTGTGTGTTTCTTCGCTCCAGAGAAGAGGCTCGCCAGGCTGGTGGAGGAGCTGTCCAGGGATCGGAGgtcTGCATTTGGTTCCCTGGTCCAGGAGTTcatccagagacagagagaggagctgagagaGGTCCTGGCGCAGGCTGCATCCTCATCATCGTCTTTCTCATCGACGACCTCCGTGGGGGTGCTCCAGGGACTGCGGCGCTTCCTGTCCCAGGCCAATTGCTTCCTGCTGGACAGCGGAGAGCTGTCACCCCCCCTAGAGACCCTGGTGCCTGACAATGAGAAAGACTTAGCCCTGGAGAAGGCCATGTTTGGCTGTGTGCTGAAGCCTCTGAGGGTGCTGCTTGGCcaggccctcctctccctccacagaCAGGATGGCTCCACCCAGCGCCTGGCCTGCAGTCTCCTGGACTGCCAAGAGGGGGCGATGGAGCACCTTGGGGTGCTTGTGGGCGTGCCCGACACCCGTGGCGTGGAGAGGGTGAGGCAGAAGCTGGCTCTCATGCAGCGCACACACTCGCCCATAGACAAGATGCTGCTGCTTCTGCAGATGTGCAAGGCGGTCCAGAAAGCCATGGGGGCCCTCCACGACGGTGGACAGGAAGTGAGCTCGACGGACTTCCTGCCGGCGCTGTCCTATGTGATAGTGATGTGTAACACACCTCAGATCCTACTGGAGGTGGAGTACATGATGGAGCTGCTGGAGCCCTCCTGGCTCACTGGGGAGGGTGGGTACTACCTGACCAGCGTCTATGCCAGCCTGTGTCTGATCCAGAGCCCGGAGGCGGAGGGGGACCAAGTCCCCCCAGGAGGTCTGACTCGTGAGGCCCAGGATGGGCTGAGGGAGTGGGGCCGCAGACGCAGCCTGGAAGCCAAGAGCCACCAGGAGAGACAACAGAACCAGaggtgCGTTCGGGTACTATTCCAGGACGGCGAGCGCAGTGCTGTGCGGACGCTGCAGTGGAGAGCCGGCGAGAGCAGCGAGGCCCTGGCCCAGCTCTGTGCCTCCACCTTCGCCGTCTCCGAGCCCCAGGACTACACCCTCTACTGGAGGTCCGGGGGGGAGATGAGGACCCTTCCCACCCAGGCACAGCCTAAGGACCTGGCCAGCCACAGCGAGGgaggcccctctctctcctacctccgcACGGACCACGACTTCAGCAAGATGCGGCGGCTGACCAGAGGGGGAGCTGTGGACCTGGGGGAGTCTATGTGTGAGGAGTgattgagggaaggagagaggaagaggaagagagggaagggtacTTCTCGGATCTCAGCGTTTTtcgattggttgattgattaaaAAAGCTGTGTTGTGTCTTGGACGTGTTGTCATAACTACAGCCCACACTAAAGACTAAGGGGcaagtctcaaatggcaccctattccatagtgGAGGTTTAAAGGTAGCGCACTGCACTACATGTttgttgaaagtagtgcactatatggggaatatggTGTCACTTGATACAGCCTTAGATAAAGGGGAGGTTGGTAGTCTATTATTCACATCACTTCTGTGCATCAGTCTGCTGCTCGCTGGTTGgaaccatagaattagaatgaattCTATGTCTATGTTCAGAACCCTGTTACCGAGGGTTGGGGTGGGGGGCTAAACCACTAGCTACCAGTATGTCCTTTGGGAGTATTGCTACTGTACAAGCAACATAAATATTTTTTACAAGACCAAACCTCAATACCAAAGTTAAGAAAGTAAAGTCATACACATAGGAATGTGTGAAGCTTAAAGGATAATCTTTACTTTAACGTAAGATGAACGTGGTTCTTTTGACTTATTTACAGTGTTACGGATATAGGAGTAAATAAGAGCCAATACAAGCAAACGCCATGAAGCCATTTTGTGATTCTGGGTCTGAGGTACTGTTGATGTTGACGCTGCCATCTCTCGTCACATATTGTCGACAGTTGACAGGGTGGGGGGAAATATTCTAAACTTTACAAGTAGACAACATGTATGAGGACTTTTGTTAAATGGCACAATATTTCCTTGTTTTGCCAAATTAATTTTACCTTACGATAAGAAAGGGACATATTTGTCAGAATAATACCTTTTTTTCTGTTTTACTTTCAATTACTGTTTCTATAGAACTGCTGTAACATTCCATGAAAAAATGAGCTTCTCAGAGAAAAGACAATCCGTGACAACGGCCAATGAAAATGGGACCATGTAATACCTCATGGTGATTGGTTGAATGTAAAGTCACCATGGTGACTCCTCCCGCTGCAGGTCATCTTTGTCAACTGACTGTTCAACTCAATGTTATTTTCAAAAAACAACTTATGATAATGTATTATTACAATAATTGTTTAAAAATGTGGAATAGTTATATTTAATATGAATCACAAGTTTGTTTATGAAAGTGAAATATTTTACTTAATGAAAGTTTCCATTGGACGACGGTTAATTTAAAGACGAACAATGACACATTCTCTGAAGACTATTGCATGCTGTTTTCATTTTATGTAAAGAACCTGCAGGTTTCGTATGTGATGCATGTGTTGGTTGTGTTGAAAAATGCAACATTATGGCATTCACTTTCTTTTCTTGTATAACACATTGCTGTATTTTTTCCAGAATTACAAAATCGCAATAAAATTGCAATATCTGTTCATAGTGCTGTTA
>XM_036957881.1
ACACAATCACTACAGAACTTCTCACGCTATGATACAACGGCGCATTCCCGAAAAGACCATTCACAGCATGGCACTCACTGAAAGAGAGACTTTCGCCAAAGGGCAAATGTTGCGGTTATCTGTATCCCCAAATCCCATGGATTTTTAACTGAACAGGAAAAAACACCCAACGAACATCAAGTTAAGCATCTTAAGAAGAATATAAAAAATAGGATAGCAGAGATGCAGGGGGACCTGGGCACCCAGAGGAGTTTCAGTGTGTTGGACcgcctcctccacacacaccctaTCTGGCTGCAGCTGTCAATCAACGCTGACTCCGCCCTCTACATCTTGCTCAGAGAACCTGTCGGGACGTTCCTGGTGCGTAAATGCAGCTCCAGCCAGAGGAAGATGTTGTGTGTCCGAGTGACAGCTGACAGGGCAGCGTCCTCCATCAAGGAGTGTCTCATATGTGAGGAGGACTCAACCTTCGCCCTGGAGAGCTCCGCCCTCAGCTTCCCAGACCTCTGCCGATTGGTGGCCTTCTACTGCATCAGCAGAGATGTGCTGCCTTTCCCTTTGGAGCTTCCAGAAGCCATTGCTCAGGCCTCTTCCCACAGAAAGCTGGAGGCCATCTCTCATATGGGATTAGAGTTCTGGTGTCCCCTGTCTGACACCCAGAATGGACCAGGGGACCGGCAGGCTCCACCCACCATCATTAAGGCCCCACCCAGCACCACCAAGACTCCACCCATCAGTGCCACCCAGGTCAAGGCAGGTCTGTCCCAGGACCTGTGTTACCTGCTGTCCTGCGGCAGACAGGAGTCTCTCTGCTTCATCAACCCACTCTTCCTACAGGTGGAGcagcagcaacagcagccaACCCAGGTGGCGTCACACAAACGCCACCGCTTCAAACGCAGTATGAGGGTCCGTGTCTCCACCGAGAGCTCCATGACTCTGTCTGGTGGTGGGGGGGCTGGGTCGTTCCCTTCCTCAGTTCCAGAAGAACCCCAGGACCAGGAGAGGCTCCAGCCCACCCCCCTCCAGCCCAGTCCCAACCCACACAGGAAGATCCATCCTGGGGCTGGCGTCCTGAGGAGGACCCCTGCACTGTCCCCGACGTCGGCAGAAGATGAGGATCTCGTGCCAATAAATGTACCGCCACCGGTAAAGGCTCCAACAGAACAGGTGGTGGAGGTAGAAGAGGACCTTCCTGCTCCAGAGGAGCCTAGCATCGAGGTGGCGTGCCTAGCCTTGGAGGGCCGCCCGGCCCCCTCTCTGGCCGAACTGGACAGCAGCAGCTCATTCAGCAGCCTGGAGGAAGAGGAACCAGAACCAGAGGACCAGTTCTTTAAACAACCAAACCACAACCCCCAGCACCGCCCGCCCATGGTGCGCTCACGGGGGGGCCACGGAGGCCTCCACAGGATGAGTGCGGCGTTTGTGTGTTTCTTCGCTCCAGAGAAGAGGCTCGCCAGGCTGGTGGAGGAGCTGTCCAGGGATCGGAGgtcTGCATTTGGTTCCCTGGTCCAGGAGTTcatccagagacagagagaggagctgagagaGGTCCTGGCGCAGGCTGCATCCTCATCATCGTCTTTCTCATCGACGACCTCCGTGGGGGTGCTCCAGGGACTGCGGCGCTTCCTGTCCCAGGCCAATTGCTTCCTGCTGGACAGCGGAGAGCTGTCACCCCCCCTAGAGACCCTGGTGCCTGACAATGAGAAAGACTTAGCCCTGGAGAAGGCCATGTTTGGCTGTGTGCTGAAGCCTCTGAGGGTGCTGCTTGGCcaggccctcctctccctccacagaCAGGATGGCTCCACCCAGCGCCTGGCCTGCAGTCTCCTGGACTGCCAAGAGGGGGCGATGGAGCACCTTGGGGTGCTTGTGGGCGTGCCCGACACCCGTGGCGTGGAGAGGGTGAGGCAGAAGCTGGCTCTCATGCAGCGCACACACTCGCCCATAGACAAGATGCTGCTGCTTCTGCAGATGTGCAAGGCGGTCCAGAAAGCCATGGGGGCCCTCCACGACGGTGGACAGGAAGTGAGCTCGACGGACTTCCTGCCGGCGCTGTCCTATGTGATAGTGATGTGTAACACACCTCAGATCCTACTGGAGGTGGAGTACATGATGGAGCTGCTGGAGCCCTCCTGGCTCACTGGGGAGGGTGGGTACTACCTGACCAGCGTCTATGCCAGCCTGTGTCTGATCCAGAGCCCGGAGGCGGAGGGGGACCAAGTCCCCCCAGGAGGTCTGACTCGTGAGGCCCAGGATGGGCTGAGGGAGTGGGGCCGCAGACGCAGCCTGGAAGCCAAGAGCCACCAGGAGAGACAACAGAACCAGaggtgCGTTCGGGTACTATTCCAGGACGGCGAGCGCAGTGCTGTGCGGACGCTGCAGTGGAGAGCCGGCGAGAGCAGCGAGGCCCTGGCCCAGCTCTGTGCCTCCACCTTCGCCGTCTCCGAGCCCCAGGACTACACCCTCTACTGGAGGTCCGGGGGGGAGATGAGGACCCTTCCCACCCAGGCACAGCCTAAGGACCTGGCCAGCCACAGCGAGGgaggcccctctctctcctacctccgcACGGACCACGACTTCAGCAAGATGCGGCGGCTGACCAGAGGGGGAGCTGTGGACCTGGGGGAGTCTATGTGTGAGGAGTgattgagggaaggagagaggaagaggaagagagggaagggtacTTCTCGGATCTCAGCGTTTTtcgattggttgattgattaaaAAAGCTGTGTTGTGTCTTGGACGTGTTGTCATAACTACAGCCCACACTAAAGACTAAGGGGcaagtctcaaatggcaccctattccatagtgGAGGTTTAAAGGTAGCGCACTGCACTACATGTttgttgaaagtagtgcactatatggggaatatggTGTCACTTGATACAGCCTTAGATAAAGGGGAGGTTGGTAGTCTATTATTCACATCACTTCTGTGCATCAGTCTGCTGCTCGCTGGTTGgaaccatagaattagaatgaattCTATGTCTATGTTCAGAACCCTGTTACCGAGGGTTGGGGTGGGGGGCTAAACCACTAGCTACCAGTATGTCCTTTGGGAGTATTGCTACTGTACAAGCAACATAAATATTTTTTACAAGACCAAACCTCAATACCAAAGTTAAGAAAGTAAAGTCATACACATAGGAATGTGTGAAGCTTAAAGGATAATCTTTACTTTAACGTAAGATGAACGTGGTTCTTTTGACTTATTTACAGTGTTACGGATATAGGAGTAAATAAGAGCCAATACAAGCAAACGCCATGAAGCCATTTTGTGATTCTGGGTCTGAGGTACTGTTGATGTTGACGCTGCCATCTCTCGTCACATATTGTCGACAGTTGACAGGGTGGGGGGAAATATTCTAAACTTTACAAGTAGACAACATGTATGAGGACTTTTGTTAAATGGCACAATATTTCCTTGTTTTGCCAAATTAATTTTACCTTACGATAAGAAAGGGACATATTTGTCAGAATAATACCTTTTTTTCTGTTTTACTTTCAATTACTGTTTCTATAGAACTGCTGTAACATTCCATGAAAAAATGAGCTTCTCAGAGAAAAGACAATCCGTGACAACGGCCAATGAAAATGGGACCATGTAATACCTCATGGTGATTGGTTGAATGTAAAGTCACCATGGTGACTCCTCCCGCTGCAGGTCATCTTTGTCAACTGACTGTTCAACTCAATGTTATTTTCAAAAAACAACTTATGATAATGTATTATTACAATAATTGTTTAAAAATGTGGAATAGTTATATTTAATATGAATCACAAGTTTGTTTATGAAAGTGAAATATTTTACTTAATGAAAGTTTCCATTGGACGACGGTTAATTTAAAGACGAACAATGACACATTCTCTGAAGACTATTGCATGCTGTTTTCATTTTATGTAAAGAACCTGCAGGTTTCGTATGTGATGCATGTGTTGGTTGTGTTGAAAAATGCAACATTATGGCATTCACTTTCTTTTCTTGTATAACACATTGCTGTATTTTTTCCAGAATTACAAAATCGCAATAAAATTGCAATATCTGTTCATAGTGCTGTTA

Function

NR:

description
ras and Rab interactor 2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036957880.1 False 4093 mRNA 0.52 13 42006315 42052638
XM_036957881.1 True 4090 mRNA 0.52 13 42006315 42052638

Neighbor

gene id symbol gene type direction distance location
LOC110500845 LOC106608891 coding upstream 31129 41942621 ~ 41975186 (+)
trnan-guu-197 NA coding upstream 126481 41879761 ~ 41879834 (+)
trnan-guu-196 NA coding upstream 129171 41877071 ~ 41877144 (+)
trnan-guu-195 NA coding upstream 130338 41875904 ~ 41875977 (+)
trnan-guu-194 NA coding upstream 134567 41871675 ~ 41871748 (+)
trnas-gcu-263 NA coding downstream 36031 42088669 ~ 42088750 (+)
trnas-gcu-264 NA coding downstream 38002 42090640 ~ 42090721 (+)
LOC110500450 clcn3 coding downstream 66634 42119272 ~ 42185004 (+)
LOC118942801 NA coding downstream 67753 42120391 ~ 42132326 (+)
LOC110500456 LOC106608882 coding downstream 160806 42213444 ~ 42220624 (+)
G1739131 NA non-coding upstream 68939 41935433 ~ 41937376 (+)
G1739115 NA non-coding upstream 79667 41920599 ~ 41926648 (+)
G1739078 NA non-coding upstream 207163 41798923 ~ 41799152 (+)
G1739070 NA non-coding upstream 218767 41778827 ~ 41787548 (+)
G1738925 LOC100380853 non-coding upstream 236468 41769501 ~ 41769847 (+)
G1739093 NA non-coding downstream 60678 42113316 ~ 42120480 (+)
G1739245 NA non-coding downstream 69752 42122390 ~ 42123986 (+)
G1739084 NA non-coding downstream 89715 42142353 ~ 42143265 (+)
G1739286 LOC106608879 non-coding downstream 175476 42228114 ~ 42228789 (+)
G1739288 NA non-coding downstream 176477 42229115 ~ 42229351 (+)
G1739103 NA other upstream 108459 41888811 ~ 41897856 (+)
G1738119 NA other upstream 977179 41024710 ~ 41029136 (+)
G1738057 LOC100194703 other upstream 1008995 40955050 ~ 40997320 (+)
G1737866 LOC103384823 other upstream 1452462 40552011 ~ 40553853 (+)
LOC110500409 LOC106599480 other upstream 1602630 40401452 ~ 40404840 (+)
cxcl8c cxcl8c other downstream 232418 42285056 ~ 42288500 (+)
si:dkey-185m8.2 LOC106608874 other downstream 301939 42354556 ~ 42370239 (+)
G1739440 vax2 other downstream 448711 42501349 ~ 42502357 (+)
G1740312 r1441 other downstream 1203015 43255653 ~ 43327738 (+)
LOC110500499 ubil other downstream 1214576 43267057 ~ 43268143 (+)

Expression


Co-expression Network