LOC110500456 (LOC106608882)


Basic Information

Item Value
gene id LOC110500456
gene name LOC106608882
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 42213444 ~ 42220624 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021577840.2
TTACTGTCATGTTTATACAAACAACGGGGAAATGCGTTGAGGGAAAGCAGCTTCATCCTTACCTTGATTCGTGAGCAACTAGCGTTCATTTATCTAAAAGGCAGCCAGCTAACTCTAGTTAATTATTACAGCTAACGCTAGCCAGCTAAGTTAGCTAACTTTAGTCAGTTGTATTTTGTCAAGCGACAACACATGTTGGGCTTGCAAATGCTTCATCAAAGTAGACTATTTGCTACTTATCACGCTATCAAAGCACATGACAACTCTTGAGTAGGTTTGGTCGTCCCGTGATCGCATTGAGTAGCTAGATAGTTACAGTAAACATTTGGTTTACCTAGCGAACAGTTGCTGACGACTCTTCCGTAGATTGCTGACGACTCTTCCGTAGATCGAGCAAGGCCAACTTGGTAGGATGTAGACTGGCAGAACCTGTTTTCTGGTTTCAATGGGGAAAAGGAAAGACATGATCCACCCAAGGTTTATTTTAGGTGATGGAGGCCACGTGGGCTTACAAAGCCTGCATAGGCGGAAACACAAAAAACACAAGAAGAAGCATCACCGCGACAACGGACACAGCTCCTACTCCGAGGCCCTGGAGTCAGACTCCGGGATTGTGTTCAAGCCCCCCACACAGCTCAGACTCAAGATCAAACTGGGAGGCCAAACGCTTGGGACAAAAAGTGTGCCAACGTTCACTGTGGTCCCTGGTGTAGCCCATTCCCAGTGTCCTCTGATGATCGTGGACGACGATGACGACTCTGATGATGATAAACCTTCTGAGGGTGTTCCACTTGAGCAGTACCGGGCCTGGCTTGGTGAGTGCAAAGATGAGGACAGTAACCTGGACCCGTCTCCTCTGCCAGACATGGACTCAGACTCCCTGGGTAAGCCGGTGGACGAGGAGGAGAAGTGGCTGGACGCCCTGGAGAAAGGAGAGCTGGACGACAACGGAGAGTTGAAGAAGGAGATCGATGAGTCCCTGCTCACAGCCAGACAGAAAGCCCTCCTGCACAAGCAACAGAACCAGCCTCTCCTGGAGCTGCCCATGGGCTACAAGGAGAAGGAGATGACCACCGAGATGAtgcagaagagagaggagtgtgcCCGCAAGAGGCGCCTGCAGGCGGCCAAGAAGGCAGAGGAGGACAAGAACCAGACCATTGAGAGGCTCACCAAGACCTCCAAGGCCAAGATCAAGAGTATGAGGGAGCGTAAGTCCAAGCAGGCCCAGTGTCCCATGGTCCGCTACTATGACTCAGCCCAGGGAATGGAGATTTCGTTCCCAACAGGGGTGCTTGCCCCGACCCCTGCTTCCCTGTGCCCCCCTCCCCTGGCACCGGTAGGCTGCGGGATAAACGGGTGCAGTAATCTGAAGAGGTACTCGTGCTCCAAGACTGGGATCCCTCTCTGTAGTCTGGACTGCTACAAGAAGAATCTGGTCCTTGTTGTGGAGAGTGCTGCTTGAATTTGACCGTTTTCAAATGTTTTGGCTTGCTGGCAGTTTAGACTCTTGGGCTAAATGGACAATGtgtcattttttttgtattttgagaGATTATGaaaaggcttttttttttttctctctctttgtgtgatGTATACTATCAAAAGAGTTCCAACCAATGCATCAGTCAGTCAATTTAGTCCTGATACTAGGATGACATAAGGTAGGCTACAGCCACACCAGGCCCTATCAAACAGCAAGCATTTATTTCTAGATCCTTAGTTTGTGGAAGTCCACATAATGTAGATTGAATAAGACTTTAAGAAGGCAAGCTTATTTTTGTAACAGCAGGACAGAAATAACAGCGCTGTTTGCCTGATGATCATGAAGGACTTTCATTTGTATAAATATATGAATGGTTTCGTATTAATTTTGGCAAGCATAACAGCAGTAACATGTTTGATAAATTGAGAAAATGACCCAGAGGAAACCAAAATATGTTTTTCTTTTAATTGTCACAAATGTGCATTTGTATCACAAATTATTACATTTCCATACAAAATACTGTACATCTTAAATAAAATATCATAACACTTA
>XM_021577841.2
TTACTGTCATGTTTATACAAACAACGGGGAAATGCGTTGAGGGAAAGCAGCTTCATCCTTACCTTGATTCGTGAGCAACTAGCGTTCATTTATCTAAAAGGCAGCCAGCTAACTCTAGTTAATTATTACAGCTAACGCTAGCCAGCTAAGTTAGCTAACTTTAGTCAGTTGTATTTTGTCAAGCGACAACACATGTTGGGCTTGCAAATGCTTCATCAAAGTAGACTATTTGCTACTTATCACGCTATCAAAGCACATGACAACTCTTGAGTAGGTTTGGTCGTCCCGTGATCGCATTGAGTAGCTAGATAGTTACAGTAAACATTTGGTTTACCTAGCGAACAGTTGCTGACGACTCTTCCGTAGATTGCTGACGACTCTTCCGTAGATCGAGCAAGGCCAACTTGGTAGGATGTAGACTGGCAGAACCTGTTTTCTGGTTTCAATGGGGAAAAGGAAAGACATGATCCACCCAAGGTTTATTTTAGGTGATGGAGGCCACGTGGGCTTACAAAGCCTGCATAGGCGGAAACACAAAAAACACAAGAAGAAGCATCACCGCGACAACGGACACAGCTCCTACTCCGAGGCCCTGGAGTCAGACTCCGGGATTGTGTTCAAGCCCCCCACACAGCTCAGACTCAAGATCAAACTGGGAGGCCAAACGCTTGGGACAAAAAGTGTGCCAACGTTCACTGTGGTCCCTGGTGTAGCCCATTCCCAGTGTCCTCTGATGATCGTGGACGACGATGACGACTCTGATGATGATAAACCTTCTGAGGGTGTTCCACTTGAGCAGTACCGGGCCTGGCTTGATGAGGACAGTAACCTGGACCCGTCTCCTCTGCCAGACATGGACTCAGACTCCCTGGGTAAGCCGGTGGACGAGGAGGAGAAGTGGCTGGACGCCCTGGAGAAAGGAGAGCTGGACGACAACGGAGAGTTGAAGAAGGAGATCGATGAGTCCCTGCTCACAGCCAGACAGAAAGCCCTCCTGCACAAGCAACAGAACCAGCCTCTCCTGGAGCTGCCCATGGGCTACAAGGAGAAGGAGATGACCACCGAGATGAtgcagaagagagaggagtgtgcCCGCAAGAGGCGCCTGCAGGCGGCCAAGAAGGCAGAGGAGGACAAGAACCAGACCATTGAGAGGCTCACCAAGACCTCCAAGGCCAAGATCAAGAGTATGAGGGAGCGTAAGTCCAAGCAGGCCCAGTGTCCCATGGTCCGCTACTATGACTCAGCCCAGGGAATGGAGATTTCGTTCCCAACAGGGGTGCTTGCCCCGACCCCTGCTTCCCTGTGCCCCCCTCCCCTGGCACCGGTAGGCTGCGGGATAAACGGGTGCAGTAATCTGAAGAGGTACTCGTGCTCCAAGACTGGGATCCCTCTCTGTAGTCTGGACTGCTACAAGAAGAATCTGGTCCTTGTTGTGGAGAGTGCTGCTTGAATTTGACCGTTTTCAAATGTTTTGGCTTGCTGGCAGTTTAGACTCTTGGGCTAAATGGACAATGtgtcattttttttgtattttgagaGATTATGaaaaggcttttttttttttctctctctttgtgtgatGTATACTATCAAAAGAGTTCCAACCAATGCATCAGTCAGTCAATTTAGTCCTGATACTAGGATGACATAAGGTAGGCTACAGCCACACCAGGCCCTATCAAACAGCAAGCATTTATTTCTAGATCCTTAGTTTGTGGAAGTCCACATAATGTAGATTGAATAAGACTTTAAGAAGGCAAGCTTATTTTTGTAACAGCAGGACAGAAATAACAGCGCTGTTTGCCTGATGATCATGAAGGACTTTCATTTGTATAAATATATGAATGGTTTCGTATTAATTTTGGCAAGCATAACAGCAGTAACATGTTTGATAAATTGAGAAAATGACCCAGAGGAAACCAAAATATGTTTTTCTTTTAATTGTCACAAATGTGCATTTGTATCACAAATTATTACATTTCCATACAAAATACTGTACATCTTAAATAAAATATCATAACACTTA

Function

NR:

description
INO80 complex subunit B-like isoform X2

GO:

id name namespace
GO:0031011 Ino80 complex cellular_component

KEGG:

id description
K11666 INO80B, ZNHIT4, PAPA1; INO80 complex subunit B

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021577840.2 False 2041 mRNA 0.46 5 42213444 42220624
XM_021577841.2 True 2029 mRNA 0.46 5 42213444 42220624

Neighbor

gene id symbol gene type direction distance location
LOC110500450 clcn3 coding upstream 28440 42119272 ~ 42185004 (+)
LOC118942801 NA coding upstream 81118 42120391 ~ 42132326 (+)
trnas-gcu-264 NA coding upstream 122723 42090640 ~ 42090721 (+)
trnas-gcu-263 NA coding upstream 124694 42088669 ~ 42088750 (+)
LOC110500448 LOC106608889 coding upstream 160806 42006315 ~ 42052638 (+)
cxcl8c cxcl8c coding downstream 64505 42285056 ~ 42288500 (+)
si:dkey-185m8.2 LOC106608874 coding downstream 133932 42354556 ~ 42370239 (+)
si:ch211-1o7.2 ankrd53 coding downstream 187026 42407650 ~ 42410829 (+)
LOC110500464 NA coding downstream 252643 42473267 ~ 42482530 (+)
trnak-cuu-149 NA coding downstream 323760 42544384 ~ 42544456 (+)
G1739084 NA non-coding upstream 70179 42142353 ~ 42143265 (+)
G1739245 NA non-coding upstream 89458 42122390 ~ 42123986 (+)
G1739093 NA non-coding upstream 92964 42113316 ~ 42120480 (+)
G1739131 NA non-coding upstream 276068 41935433 ~ 41937376 (+)
G1739115 NA non-coding upstream 286796 41920599 ~ 41926648 (+)
G1739286 LOC106608879 non-coding downstream 7490 42228114 ~ 42228789 (+)
G1739288 NA non-coding downstream 8491 42229115 ~ 42229351 (+)
G1739289 NA non-coding downstream 8795 42229419 ~ 42229623 (+)
G1739290 NA non-coding downstream 10590 42231214 ~ 42231492 (+)
G1739293 NA non-coding downstream 18133 42238757 ~ 42239201 (+)
G1739103 NA other upstream 315588 41888811 ~ 41897856 (+)
G1738119 NA other upstream 1184308 41024710 ~ 41029136 (+)
G1738057 LOC100194703 other upstream 1216124 40955050 ~ 40997320 (+)
G1737866 LOC103384823 other upstream 1659591 40552011 ~ 40553853 (+)
LOC110500409 LOC106599480 other upstream 1809759 40401452 ~ 40404840 (+)
G1739440 vax2 other downstream 280725 42501349 ~ 42502357 (+)
G1740312 r1441 other downstream 1035029 43255653 ~ 43327738 (+)
LOC110500499 ubil other downstream 1046590 43267057 ~ 43268143 (+)

Expression


Co-expression Network