LOC110500477 (LOC106608861)


Basic Information

Item Value
gene id LOC110500477
gene name LOC106608861
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 42790604 ~ 42800548 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021577865.2
TTTAGCCAATGAGAAAGTAGTCGAGCACAGCCTACCCACGCTCTCTTTGTCCTTTCTGTGAAATGTTGATAGTTCTTTCATTCTGCATGGAGAGCAGTGACCTGTAGGTGTCCATTTGTTGATCATTGATTCGAGTTGTCCAAAGCAAAGAGCCATGGTTCAAGCCAAGACCTGGGTCCTGACACGTCACTTTGAAGGCTTCCCGAAGGACAGCAACTTTGAGCTGAAGCTGGAGCAGCTGCCAGAGCCTAAAGATGGAGAGGTGCTTTTGGAGGCACTGTTTCTCAGTGTAGATCCATACATGAGACCGTTCAGCCGAGTGCGTATGAAGGAGGGGGAAGTGATGATCGGAACTCAAGTGGCCAAggTGATCCAGAGCATCAACCCAGCCTTCCCTGTGGGGTGCCATGTGGTTGGTAGATGCGGCTGGAGGACCCACACTGTGTCTGACGGGACAGGTCTGAGATGCCTTCTGTCTGACTGGCCTCAGGATGTCTCCATGTCCCTGGCTCTGGGGGCCATCGGCATGCCAGGGTTGACAGCCCTGTACGGTCTGGAGGAGGTACTGGGACTTCAGGCTGGAGAGACCCTACTGGTCAACGCTGCAGCCGGGGCCGTGGGCTCCATCGTGGGCCAGATCGCTAAGATCAAGGGCTGCAGAGTTGTGGGCTCCACTGGGTCCAACGGCAAGGTGGCCTTCCTCAAGGAGCTAGGCTTCGATGAGGCCTTCAACTACAAAACAGTCAACTCACTGGAGGAGGTCCTGAAGACTGCCTCGCCCGACGGATACGATTGCTTCTTTGAGAACGTGGGAGGACTTTTCTCCAGTGTCGCCATTCCTCAGATGAAGGAGTTTGGAAGGATAGCTGTGTGCGGCAGCATCTCAACCTATAATGACACCAATCCACAGACAGGCCCATACCCCCACCTGACCATGATCTTCAAGCAGCTAAAGATGGAGGGCTTCATGGTGGGCAGGTGGGAGCATAAGAACCCAGAGTCTCTAAGGAGACTCATGGCTTGGAAGAAAGAGGGGAAACTGCAGTGTCGTGAGCAAGTCACTGAAGGCTTTGAGAACATGCCTGCTGCCTTTATGGGAATGCTGCAGGGAGAAAACATTGGAAAAGCTATTGTTAAAGTTTGATGTGGCTTCAATAGATACTCTATAACCCATAGAATTAGGATTCAAGGAGCATTCTATTCTACCCATAGGAAAGCCACAGTGTAACTATGACAATGCATTTTGGAATTATTTGTATTGTAGAGTGTATTCGTAGAACAACCCTATTATACCAGCACATCATAGTCTGTCCTTGACTCAAAAATGTTAACTTTGTATGAAGTATTAAAGTCCTTTCAGGCTTTTGTTTTGTAAAAA
>XM_036957892.1
TGTCCTTTCTGTGAAATGTTGATAGTTCTTTCATTCTGCATGGAGAGCAGTGACCTGTAGGTGTCCATTTGTTGATCATTGATTCGAGCCTATTCTTTCAGTTGTCCAAAGCAAAGAGCCATGGTTCAAGCCAAGACCTGGGTCCTGACACGTCACTTTGAAGGCTTCCCGAAGGACAGCAACTTTGAGCTGAAGCTGGAGCAGCTGCCAGAGCCTAAAGATGGAGAGGTGCTTTTGGAGGCACTGTTTCTCAGTGTAGATCCATACATGAGACCGTTCAGCCGAGTGCGTATGAAGGAGGGGGAAGTGATGATCGGAACTCAAGTGGCCAAggTGATCCAGAGCATCAACCCAGCCTTCCCTGTGGGGTGCCATGTGGTTGGTAGATGCGGCTGGAGGACCCACACTGTGTCTGACGGGACAGGTCTGAGATGCCTTCTGTCTGACTGGCCTCAGGATGTCTCCATGTCCCTGGCTCTGGGGGCCATCGGCATGCCAGGGTTGACAGCCCTGTACGGTCTGGAGGAGGTACTGGGACTTCAGGCTGGAGAGACCCTACTGGTCAACGCTGCAGCCGGGGCCGTGGGCTCCATCGTGGGCCAGATCGCTAAGATCAAGGGCTGCAGAGTTGTGGGCTCCACTGGGTCCAACGGCAAGGTGGCCTTCCTCAAGGAGCTAGGCTTCGATGAGGCCTTCAACTACAAAACAGTCAACTCACTGGAGGAGGTCCTGAAGACTGCCTCGCCCGACGGATACGATTGCTTCTTTGAGAACGTGGGAGGACTTTTCTCCAGTGTCGCCATTCCTCAGATGAAGGAGTTTGGAAGGATAGCTGTGTGCGGCAGCATCTCAACCTATAATGACACCAATCCACAGACAGGCCCATACCCCCACCTGACCATGATCTTCAAGCAGCTAAAGATGGAGGGCTTCATGGTGGGCAGGTGGGAGCATAAGAACCCAGAGTCTCTAAGGAGACTCATGGCTTGGAAGAAAGAGGGGAAACTGCAGTGTCGTGAGCAAGTCACTGAAGGCTTTGAGAACATGCCTGCTGCCTTTATGGGAATGCTGCAGGGAGAAAACATTGGAAAAGCTATTGTTAAAGTTTGATGTGGCTTCAATAGATACTCTATAACCCATAGAATTAGGATTCAAGGAGCATTCTATTCTACCCATAGGAAAGCCACAGTGTAACTATGACAATGCATTTTGGAATTATTTGTATTGTAGAGTGTATTCGTAGAACAACCCTATTATACCAGCACATCATAGTCTGTCCTTGACTCAAAAATGTTAACTTTGTATGAAGTATTAAAGTCCTTTCAGGCTTTTGTTTTGTAAAAA

Function

NR:

description
prostaglandin reductase 1-like

GO: NA

KEGG:

id description
K13948 PTGR1, LTB4DH; prostaglandin reductase 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021577865.2 False 1378 mRNA 0.50 10 42790604 42800548
XM_036957892.1 True 1344 mRNA 0.50 10 42790651 42800548

Neighbor

gene id symbol gene type direction distance location
LOC110500846 nat8l coding upstream 100325 42676945 ~ 42692054 (+)
c21h4orf48 cssa07h4orf48 coding upstream 129509 42655361 ~ 42661164 (+)
faah2b LOC106608863 coding upstream 149323 42633393 ~ 42641281 (+)
LOC110500468 LOC106608867 coding upstream 204391 42569232 ~ 42586213 (+)
trnan-guu-198 NA coding upstream 243464 42547067 ~ 42547140 (+)
LOC110500479 LOC106608859 coding downstream 21167 42821715 ~ 42834094 (+)
LOC110500480 LOC106608857 coding downstream 202138 43002686 ~ 43034963 (+)
gmpr2 LOC106608854 coding downstream 241218 43041766 ~ 43055080 (+)
LOC110500484 LOC106608853 coding downstream 257964 43058512 ~ 43062374 (+)
tinf2 LOC106608852 coding downstream 273737 43074285 ~ 43079143 (+)
G1740051 NA non-coding upstream 40126 42750217 ~ 42750478 (+)
G1740050 NA non-coding upstream 41526 42748824 ~ 42749078 (+)
G1739909 NA non-coding upstream 60372 42730010 ~ 42730232 (+)
G1739867 NA non-coding upstream 95819 42692495 ~ 42694785 (+)
G1740095 NA non-coding downstream 11336 42811884 ~ 42812200 (+)
G1740097 NA non-coding downstream 14233 42814781 ~ 42815092 (+)
G1740098 NA non-coding downstream 16335 42816883 ~ 42817139 (+)
G1740099 NA non-coding downstream 16616 42817164 ~ 42817363 (+)
G1740100 NA non-coding downstream 16889 42817437 ~ 42817844 (+)
G1739440 vax2 other upstream 288247 42501349 ~ 42502357 (+)
si:dkey-185m8.2 LOC106608874 other upstream 435277 42354556 ~ 42370239 (+)
cxcl8c cxcl8c other upstream 502104 42285056 ~ 42288500 (+)
G1739103 NA other upstream 892748 41888811 ~ 41897856 (+)
G1738119 NA other upstream 1761468 41024710 ~ 41029136 (+)
G1740312 r1441 other downstream 455105 43255653 ~ 43327738 (+)
LOC110500499 ubil other downstream 466666 43267057 ~ 43268143 (+)
G1740366 LOC106608832 other downstream 588641 43389189 ~ 43390299 (+)
G1740398 NA other downstream 646502 43447050 ~ 43451167 (+)
G1740412 LOC106608825 other downstream 669270 43469818 ~ 43470325 (+)

Expression


Co-expression Network