XLOC_036296


Basic Information

Item Value
gene id XLOC_036296
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 14474769 ~ 14482457 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00072012
GGGACATATTTCTTCCTCTGTTTTTTCCCTGGTAAGTacgattaataaaacatataacaatattttagttaaaagactgctttattacctttttatcgttatttaaaatgatttttgtcttTTATGAAGCGCCCATGGAAAGTACAGCAGTGAATTacgtttaatattgttaataagatCAGACTTTATTTCATTAAGATCAAACTGAGCTATGAgtggttaaatgtaatttaaacaagcatttacctaatgattttttacctttttatacgTTTTTCTCATCAGTAAATATGAtatctgttcatttacagttgtTTGTCCGTATTTTTCTAAACTGCCGTGCGCGGGAAGTGGCGTGACGTCCAATCACCCACTCACTCCCTCTGCACCTGACTGGATTAACGGTAAACGTCAGTTTGTCTGTAAGAGTGTAAAaggtatgttaattattttatagaaatataaatgttttctttgtacagTGCATTGAACAAGGGATAGCATTCAAAGTTTGTGTCACTGTGTAGTTTGGTTGATATACGTTACCTTTAATGAACACTAACGTTAACGTGTTTCAAACGCTCGTAACACCTgaccgtctgtgtttgtttgcatattaatgactaatttcatatttttactgaCGTTATCAAATGTTAGCTTTAGTTTGACCGACGTATTAAGGCTGTGTGACCGAGTTTCAGTGGAACAGCTTTGCTGGTTTTTAAGTAAGTTATAAGTTAGACTCGCGTGAATTGGAGGCATTTGTAACTCGGTATGAGGGGAAATACACACTCGTAAAGTttttattagtggtgggccgttatcagcattaacgtgctgcgttaacgcgagacttatcgcgcggtaaaaaaaaatatatcgccgttaatctattctcaacgttgggttgggagctgggtgacTTTCATactttgatattttagcgcggatgtatacctgaccggtgagccgtctgacaaacaagtgcccttatgaatcaaatcagcaggatgcctgactttaactgcagttcggcagtttcactttaactcatgaacatttcattcatcccgcgtgacaaactggggtaataGACGCAAATAAGAAGCAAGAACTGATGagaatgttatggaatttaacaaCGCTCGCCAAatggaacgaaaaaaaaaacttccgcatttcgcgacgcgtgtttgtgtgtacagagataacagagtgatacagtacgtgtgtgacatttaaaagtatttatagtgtttacactgTCATGCGTTTTCGGCCTCAAATACAACGTGTACCTTAAAGCAgacaattaaatgtttgttgtagtcGAGTTGAACtgtcattgatatttatttattcacttttaagaACCTCAAGGGCAGCTAATATGAAGATATAAAGATGAGTTGTTCTTCCACAGTCTTAAAATTCTTCAAACTAATTGTCAGTTCGATTCATTATAGCAAACAATACTTTCTTTACTATTAGGAGATCAggagttttattttaatgaaacctTGATAATAGAGTGAACTACACATGGTGTTATCGCAAATGAAATCTTTTTATGTAGATTTTAAGTGAGTTTTATTTGCACAaataaggttcactgatattttgctttgttgactttcaggttctttcattttggttataagtacatGTTACAGgtgtgttggtgtaaaaattgatgctgactggtgtgttggtgtaaaaagtGATGCTGACTGaactcaggcagttgtgctggaccctctgtaccttatacaggagatgacggtaaactttgaagtttaagagGTTCTGTaattttggttataagtacaagaactcaggcagttgtgctggaccatCTGTACCTAATACAGGGGATGACAGTAAACTTccaagtttaagagcCACCTGATGATGAGAGAGACAATTTCAATGTGGGCATCTTGATGaagaagagTCCACAGTCACAATAACAAGATCATTGAGCTGTCCCCTAATTGTGGTGAGCTACATGTTTAGTCTCTTATGTGCTAAACATTATGTAGCCTAAGGAAGCAGCCCTGACTCTGGAGTTTATATGAAgGAGCATGCTGAGTAACTATCCAAAATGTAGGTCCATAGCAGAAAAAAGTGCACCAAGCAGAAACATACCATCTAAACTCCTTCGATTCCTGTCAGACCAGAAAGACTTTCAGAATCCTTGGAAGATTTAAAGccattGAAGTATCAGTATTGGAGCGGAAGAAGATCCAGTTGTATCGTCTGTTTCCTGCCATCTTGCAGTTAACCTGGTTTCTTAATGTAAAGTACTTGTAATTTGCCCACTTGTCCTCAATTATCTTAAagctaacatttaaaactaatttgcttTGAGATTATTTGCCAAGACTTCTCACTGTGTGATTCACATGTcaatatgtatttattgtgtgtataacttgctatttggaattcaaatgatttgtattcattaaagaatctgttttaat
>TCONS_00072013
cCACCTGATGATGAGAGAGACAATTTCAATaagaagagTCCACAGTCACAATAACAAGATCATTGAGCTGTCCCCTAATTGTGGTGAGCTACATGTTTAGTCTCTTATGTGCTAAACATTATGTAGCCTAAGGAAGCAGCCCTGACTCTGGAGTTTATATGAAgGAGCATGCTGAGTAACTATCCAAAATGTAGGTCCATAGCAGAAAAAAGTGCACCAAGCAGAAACATACCATCTAAACTCCTTCGATTCCTGTCAGACCAGAAAGACTTTCAGAATCCTTGGAAGATTTAAAG
>TCONS_00072014
atctacactgtaaaaaaaatctgtaaaataacagttaaatgactgtatattttaacagattttttccgTATACACGTATTACGGGTGTTTTtccgtttatatacattttcgaattgcattgtgggaaggGGATCGCAGCTCAGACAGCGTTTGATGGACACCGGGACATATTTCTTCCTCTGTTTTTTCCCTGttgtTTGTCCGTATTTTTCTAAACTGCCGTGCGCGGGAAGTGGCGTGACGTCCAATCACCCACTCACTCCCTCTGCACCTGACTGGATTAACGGTAAACGTCAGTTTGTCTGTAAGAGTGTAAAag

Function

GO:

id name namespace
GO:0042692 muscle cell differentiation biological_process
GO:0048731 system development biological_process
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0048747 muscle fiber development biological_process
GO:0021546 rhombomere development biological_process
GO:0051146 striated muscle cell differentiation biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0007517 muscle organ development biological_process
GO:0007519 skeletal muscle tissue development biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0030154 cell differentiation biological_process
GO:0048513 animal organ development biological_process
GO:0055001 muscle cell development biological_process
GO:0055002 striated muscle cell development biological_process
GO:0071599 otic vesicle development biological_process
GO:0035295 tube development biological_process
GO:0009058 biosynthetic process biological_process
GO:0043049 otic placode formation biological_process
GO:0009887 animal organ morphogenesis biological_process
GO:0007275 multicellular organism development biological_process
GO:0009888 tissue development biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0060429 epithelium development biological_process
GO:1901861 regulation of muscle tissue development biological_process
GO:0048568 embryonic organ development biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0048856 anatomical structure development biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:0016202 regulation of striated muscle tissue development biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:0008543 fibroblast growth factor receptor signaling pathway biological_process
GO:0048598 embryonic morphogenesis biological_process
GO:0010467 gene expression biological_process
GO:0010468 regulation of gene expression biological_process
GO:0048869 cellular developmental process biological_process
GO:0048634 regulation of muscle organ development biological_process
GO:0071696 ectodermal placode development biological_process
GO:0071697 ectodermal placode morphogenesis biological_process
GO:0048641 regulation of skeletal muscle tissue development biological_process
GO:0048646 anatomical structure formation involved in morphogenesis biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0003261 cardiac muscle progenitor cell migration to the midline involved in heart field formation biological_process
GO:0003007 heart morphogenesis biological_process
GO:0060788 ectodermal placode formation biological_process
GO:0061061 muscle structure development biological_process
GO:0032501 multicellular organismal process biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032502 developmental process biological_process
GO:0060537 muscle tissue development biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0060538 skeletal muscle organ development biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0014706 striated muscle tissue development biological_process
GO:0044344 cellular response to fibroblast growth factor stimulus biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0071774 response to fibroblast growth factor biological_process
GO:0009790 embryo development biological_process
GO:0043565 sequence-specific DNA binding molecular_function
GO:0005111 type 2 fibroblast growth factor receptor binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0070851 growth factor receptor binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00072012 False 2489 lncRNA 0.36 10 14474769 14482295
TCONS_00072013 False 296 lncRNA 0.41 3 14477492 14478857
TCONS_00072014 True 319 lncRNA 0.41 2 14481859 14482457

Neighbor

gene id symbol gene type direction distance location
XLOC_036294 BX294388.2 coding downstream 22331 14414353 ~ 14452438 (-)
XLOC_036293 xpr1a coding downstream 98879 14244476 ~ 14375890 (-)
XLOC_036292 sin3b coding downstream 235746 14211746 ~ 14239023 (-)
XLOC_036291 def6a coding downstream 264917 14185295 ~ 14209852 (-)
XLOC_036290 rhoaa coding downstream 290346 14170567 ~ 14184423 (-)
XLOC_036297 NA coding upstream 8836 14491293 ~ 14495346 (-)
XLOC_036298 qsox1 coding upstream 21153 14503610 ~ 14554785 (-)
XLOC_036299 cep350 coding upstream 76921 14559378 ~ 14609284 (-)
XLOC_036300 NA coding upstream 300757 14783214 ~ 14790721 (-)
XLOC_036301 NA coding upstream 595579 15078036 ~ 15081665 (-)
XLOC_036286 BX248385.1 non-coding downstream 380253 14092794 ~ 14094516 (-)
XLOC_036279 CT025854.2 non-coding downstream 596924 13877728 ~ 13877845 (-)
XLOC_036277 NA non-coding downstream 758192 13714942 ~ 13716577 (-)
XLOC_036263 NA non-coding downstream 1168721 13302679 ~ 13306048 (-)
XLOC_036303 NA non-coding upstream 768726 15251183 ~ 15251469 (-)
XLOC_036307 FP017128.1 non-coding upstream 1150275 15632732 ~ 15632847 (-)

Expression


Co-expression Network