tinf2 (LOC106608852)


Basic Information

Item Value
gene id tinf2
gene name LOC106608852
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 43074285 ~ 43079143 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021577879.2
AGAGCCATCACATTACGTCACATCCTGAAAGGAAAGTGTCCTGGACAAGGCGGGAGAAGACATGGTGATTGAGATATAAAAGAACACAGATTGTTTTTCTTCTTAAAATGTCCAAACTTTCAAAGTCAGTGTAGTAGATACAGAACTTCAAGAGTTGCATATTTTCAGTTTGTATAGCTAGTTAGTCACTGTTATTGTAACCTCGTCGTTAACAATATCCAACAATCTCAGAATAAGCACTttgttagttagctaacgttgTTAGCATACAACGTTAACTATCCCAGCTAAAGAAATCGAGCTAACTTTGCCTAAATTCGGACTGGACGATATGGCAACTAAGAAGTTAACTGAAATGGaCATCTCCCTCCCCTTATCTTCCTTACGCCTCCTAGCCCCTCCTCTCCGGCTGGTCTCTGCCGCCATGTGGAAGGTGATAAAGGAACGCGATGTGATGCATTATGGGACGCTGGAGGAGTTTGTGACGTCAACCTGTGAGACAGTCCCTGGCTTGCTCACATCTAGACACCAGGCCAAGCTGGCTCTGGGGCTGAGAGCACGGCTGATCTTAGAAGTGTGTCATGGCCTGGACCCACCAGATCCAGCGGTTATCCTTCCCCAGCTGGACAGGATCCATGCCCTCACTCCTTCCTCTGCACTGAAGAAGGATGTGAAGATTGAGACCGCAGTCACCAACTTGCATGGCCTGGTGGAAGTCCTCCTGAGAGACCCCACAGAGAGAGCACTGTTCTACATGGAGGAGTTTCCTTCAGAGTATGGCCCTCAGTTTGACCAGGAACTGGAGAAACTGTTGTGGGAGTTCCTGCTCAGACTGAACCAACTTCTCCCCGTGCCTAACCTGGCTCAGACGGTGTCCTGGCTCACTGCTGCCCCTCCGGTCCTAGAGGAGTGTGCGAAGGCTGCCTCTCAACCACAGCTCCTGAGGACCCTGCTCCAGCACCAGATCTGCCTGGGTCACCTGGATTTGGCAGCTTCTCTTCCTCCCTGTATGGGCGACTCCATCCTCtcatccctatctctccctccctctggaaGAGCTCAGCAAAGCGAACAATCAGGATCTAAGCCTGCCTTTGTTTCCACCCCAAACCCTCAGTCTTTAACCCCattgaccaatcacagacagacacaaaacaGGTCATTGCCCATCACGCCTGTGATAGGTGGGATTTGCAACGAAGACCTGCCAGTCATGGCTTCAGCCAATAACAGGCCAAGAACTTGCAAGGAAGACGTTACTATCCAATCGGATTCAAGAGAAGTGGAGAAGAAAGCCGAGTCAACGGCAAGGACAAAATATACTGAGGTGGAATCTGAAGAGGACGAGGAGGTGATAGTCgtgagaagagggaggaagaggaggagtgaagagaagGATTTGATGAGTGATACAGATGAAGAGACTGAGAGGGACCTTCGAAGGGACTGTTTGGATCAGTTGGGGATTGCAGGCCTCAAGGTTCCGGAAGACCAGCACCTCTGCTCTTACATCACATCCTGTCTGCTTAACCAACCCAGAGTGCTCATCCCCCGACTGACTTCCACAGACATCATTGCACATGTGAGGTCACAACCTCACAGTCCTTCTTGCAGCAACGAGACACCAACAGCAGGTAGATCTCCATGGGGACAGAACAAGAGTCTGACGATAACTGTGCGTCGGCTTCCTTCGACCCAGCAACGGAAGTTGAATGACAGCTCGTTGACCCTAGATGTGGTGCTTCCAGCATTAGCTGACAAAGAGAACTGTGTGCTTCCTTCAGTTAGCTCTCCCTCCATTGTTCCTCTGCCTCAAATGAGAAGAAGCACAGAAATACTGACCTCACCAGTAACCAGTGACAATGATGACATCATAGGAGATTCAGAGGATGAAGCGACAAAGAATTTCAAAGGCAGGGAAGCGCTACTATAGGACCAAGCACGACACCTATGTACCCACCCTCAGGGAGTTCTGGAAGCCCAGCCTGGCCCGACCTGCTGTTTCTCGGCAACGGACACAGA
>XM_021577877.2
GAGCCATCACATTACGTCACATCCTGAAAGGAAAGTGTCCTGGACAAGGCGGGAGAAGACATGGTGATTGAGATATAAAAGAACACAGATTGTTTTTCTTCTTAAAATGTCCAAACTTTCAAAGTCAGTGTAGTAGATACAGAACTTCAAGAGTTGCATATTTTCAGTTTGTATAGCTAGTTAGTCACTGTTATTGTAACCTCGTCGTTAACAATATCCAACAATCTCAGAATAAGCACTttgttagttagctaacgttgTTAGCATACAACGTTAACTATCCCAGCTAAAGAAATCGAGCTAACTTTGCCTAAATTCGGACTGGACGATATGGCAACTAAGAAGTTAACTGAAATGGaCATCTCCCTCCCCTTATCTTCCTTACGCCTCCTAGCCCCTCCTCTCCGGCTGGTCTCTGCCGCCATGTGGAAGGTGATAAAGGAACGCGATGTGATGCATTATGGGACGCTGGAGGAGTTTGTGACGTCAACCTGTGAGACAGTCCCTGGCTTGCTCACATCTAGACACCAGGCCAAGCTGGCTCTGGGGCTGAGAGCACGGCTGATCTTAGAAGTGTGTCATGGCCTGGACCCACCAGATCCAGCGGTTATCCTTCCCCAGCTGGACAGGATCCATGCCCTCACTCCTTCCTCTGCACTGAAGAAGGATGTGAAGATTGAGACCGCAGTCACCAACTTGCATGGCCTGGTGGAAGTCCTCCTGAGAGACCCCACAGAGAGAGCACTGTTCTACATGGAGGAGTTTCCTTCAGAGTATGGCCCTCAGTTTGACCAGGAACTGGAGAAACTGTTGTGGGAGTTCCTGCTCAGACTGAACCAACTTCTCCCCGTGCCTAACCTGGCTCAGACGGTGTCCTGGCTCACTGCTGCCCCTCCGGTCCTAGAGGAGTGTGCGAAGGCTGCCTCTCAACCACAGCTCCTGAGGACCCTGCTCCAGCACCAGATCTGCCTGGGTCACCTGGATTTGGCAGCTTCTCTTCCTCCCTGTATGGGCGACTCCATCCTCtcatccctatctctccctccctctggaaGAGCTCAGCAAAGCGAACAATCAGGATCTAAGCCTGCCTTTGTTTCCACCCCAAACCCTCAGTCTTTAACCCCattgaccaatcacagacagacacaaaacaGGTCATTGCCCATCACGCCTGTGATAGGTGGGATTTGCAACGAAGACCTGCCAGTCATGGCTTCAGCCAATAACAGGCCAAGAACTTGCAAGGAAGACGTTACTATCCAATCGGATTCAAGAGAAGTGGAGAAGAAAGCCGAGTCAACGGCAAGGACAAAATATACTGAGGTGGAATCTGAAGAGGACGAGGAGGTGATAGTCgtgagaagagggaggaagaggaggagtgaagagaagGATTTGATGAGTGATACAGATGAAGAGACTGAGAGGGACCTTCGAAGGGACTGTTTGGATCAGTTGGGGATTGCAGGCCTCAAGGTTCCGGAAGACCAGCACCTCTGCTCTTACATCACATCCTGTCTGCTTAACCAACCCAGAGTGCTCATCCCCCGACTGACTTCCACAGACATCATTGCACATGTGAGGTCACAACCTCACAGTCCTTCTTGCAGCAACGAGACACCAACAGCAGGTAGATCTCCATGGGGACAGAACAAGAGTCTGACGATAACTGTGCGTCGGCTTCCTTCGACCCAGCAACGGAAGTTGAATGACAGCTCGTTGACCCTAGATGTGGTGCTTCCAGCATTAGCTGACAAAGAGAACTGTGTGCTTCCTTCAGTTAGCTCTCCCTCCATTGTTCCTCTGCCTCAAATGAGAAGAAGCACAGAAATACTGACCTCACCAGTAACCAGTGACAATGATGACATCATAGGAGATTCAGAGGATGAAGCGACAAAGAATTTCAAAGGCAGGCTGTTTAGGAAGCGCTACTATAGGACCAAGCACGACACCTATGTACCCACCCTCAGGGAGTTCTGGAAGCCCAGCCTGGCCCGACCTGCTGTTTCTCGGCAACGGACACAGATTACACACTCAATAATTCACAGACGTACGGCAAAATCCTTTCACCATCCACAGGGAGCAAAATATGAATTTTGAAACAGGAAGGGTACCATCTGAACTTTTCCAATAGGAACATGTTTCTTACTgcaaaaacattttgctacagttTGGCCAACTGAACACAACCATGGTTGTAAAAGTGAATGATTGGCAGTTTTAGGATTCTTTGTATCTGAATCACTTTGCAATAAGCTTTATTTAAAAACCtgtgacttttattttgaaatcaAGAGGATTAACCTATGTCACCAATACTTACAGCCTGTGTGCTGTCATTGTCAGGAGTTCAGATGTCCCAACACATTTTCTTTTAGGGGTCATACTTATATCTTCAGACGTTGATGGCTGCGATAACTGAGGCAAGAGCTTTCTCATATTGGCTGACAATTTAGGTAATTGTCAAGAGTTCAATGGATTATTTCAGCTCAATATCTTCAGATTCTGATGCCTGGTTGTGATAACAACTTGGAGAAAATATTTTTAACGTATTTTTCAATCAAGTATTGTCAATTCTCTGTAAATGAGTGGGGTTTTAATGTGTACTTTTGTATCTTGTCAGACTTTTCATAACTATTCTAATAACTGTTTAAGCTATAATGTCATTAAAGATTGTCATGAATTAAATGTAAATTAAGCATCTGTCAAGTAGTAAAGTAATACCTTTTAAACATTCAATGTCTTTTTATTACTGTGTAAACTACAAAGTATTAAACTGTTTTGGCTATCTTTTA
>XM_036957903.1
CAAGGCGGGAGAAGACATGaCATCTCCCTCCCCTTATCTTCCTTACGCCTCCTAGCCCCTCCTCTCCGGCTGGTCTCTGCCGCCATGTGGAAGGTGATAAAGGAACGCGATGTGATGCATTATGGGACGCTGGAGGAGTTTGTGACGTCAACCTGTGAGACAGTCCCTGGCTTGCTCACATCTAGACACCAGGCCAAGCTGGCTCTGGGGCTGAGAGCACGGCTGATCTTAGAAGTGTGTCATGGCCTGGACCCACCAGATCCAGCGGTTATCCTTCCCCAGCTGGACAGGATCCATGCCCTCACTCCTTCCTCTGCACTGAAGAAGGATGTGAAGATTGAGACCGCAGTCACCAACTTGCATGGCCTGGTGGAAGTCCTCCTGAGAGACCCCACAGAGAGAGCACTGTTCTACATGGAGGAGTTTCCTTCAGAGTATGGCCCTCAGTTTGACCAGGAACTGGAGAAACTGTTGTGGGAGTTCCTGCTCAGACTGAACCAACTTCTCCCCGTGCCTAACCTGGCTCAGACGGTGTCCTGGCTCACTGCTGCCCCTCCGGTCCTAGAGGAGTGTGCGAAGGCTGCCTCTCAACCACAGCTCCTGAGGACCCTGCTCCAGCACCAGATCTGCCTGGGTCACCTGGATTTGGCAGCTTCTCTTCCTCCCTGTATGGGCGACTCCATCCTCtcatccctatctctccctccctctggaaGAGCTCAGCAAAGCGAACAATCAGGATCTAAGCCTGCCTTTGTTTCCACCCCAAACCCTCAGTCTTTAACCCCattgaccaatcacagacagacacaaaacaGGTCATTGCCCATCACGCCTGTGATAGGTGGGATTTGCAACGAAGACCTGCCAGTCATGGCTTCAGCCAATAACAGGCCAAGAACTTGCAAGGAAGACGTTACTATCCAATCGGATTCAAGAGAAGTGGAGAAGAAAGCCGAGTCAACGGCAAGGACAAAATATACTGAGGTGGAATCTGAAGAGGACGAGGAGGTGATAGTCgtgagaagagggaggaagaggaggagtgaagagaagGATTTGATGAGTGATACAGATGAAGAGACTGAGAGGGACCTTCGAAGGGACTGTTTGGATCAGTTGGGGATTGCAGGCCTCAAGGTTCCGGAAGACCAGCACCTCTGCTCTTACATCACATCCTGTCTGCTTAACCAACCCAGAGTGCTCATCCCCCGACTGACTTCCACAGACATCATTGCACATGTGAGGTCACAACCTCACAGTCCTTCTTGCAGCAACGAGACACCAACAGCAGGTAGATCTCCATGGGGACAGAACAAGAGTCTGACGATAACTGTGCGTCGGCTTCCTTCGACCCAGCAACGGAAGTTGAATGACAGCTCGTTGACCCTAGATGTGGTGCTTCCAGCATTAGCTGACAAAGAGAACTGTGTGCTTCCTTCAGTTAGCTCTCCCTCCATTGTTCCTCTGCCTCAAATGAGAAGAAGCACAGAAATACTGACCTCACCAGTAACCAGTGACAATGATGACATCATAGGAGATTCAGAGGATGAAGCGACAAAGAATTTCAAAGGCAGGCTGTTTAGGAAGCGCTACTATAGGACCAAGCACGACACCTATGTACCCACCCTCAGGGAGTTCTGGAAGCCCAGCCTGGCCCGACCTGCTGTTTCTCGGCAACGGACACAGATTACACACTCAATAATTCACAGACGTACGGCAAAATCCTTTCACCATCCACAGGGAGCAAAATATGAATTTTGAAACAGGAAGGGTACCATCTGAACTTTTCCAATAGGAACATGTTTCTTACTgcaaaaacattttgctacagttTGGCCAACTGAACACAACCATGGTTGTAAAAGTGAATGATTGGCAGTTTTAGGATTCTTTGTATCTGAATCACTTTGCAATAAGCTTTATTTAAAAACCtgtgacttttattttgaaatcaAGAGGATTAACCTATGTCACCAATACTTACAGCCTGTGTGCTGTCATTGTCAGGAGTTCAGATGTCCCAACACATTTTCTTTTAGGGGTCATACTTATATCTTCAGACGTTGATGGCTGCGATAACTGAGGCAAGAGCTTTCTCATATTGGCTGACAATTTAGGTAATTGTCAAGAGTTCAATGGATTATTTCAGCTCAATATCTTCAGATTCTGATGCCTGGTTGTGATAACAACTTGGAGAAAATATTTTTAACGTATTTTTCAATCAAGTATTGTCAATTCTCTGTAAATGAGTGGGGTTTTAATGTGTACTTTTGTATCTTGTCAGACTTTTCATAACTATTCTAATAACTGTTTAAGCTATAATGTCATTAAAGATTGTCATGAATTAAATGTAAATTAAGCATCTGTCAAGTAGTAAAGTAATACCTTTTAAACATTCAATGTCTTTTTATTACTGTGTAAACTACAAAGTATTAAACTGTTTTGGCTATCTTTTA

Function

NR:

description
uncharacterized protein LOC110500487 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021577879.2 False 2022 mRNA 0.50 9 43074285 43078374
XM_021577877.2 False 2798 mRNA 0.45 9 43074286 43079143
XM_036957903.1 True 2459 mRNA 0.47 9 43074330 43079143

Neighbor

gene id symbol gene type direction distance location
LOC110500484 LOC106608853 coding upstream 11911 43058512 ~ 43062374 (+)
gmpr2 LOC106608854 coding upstream 19205 43041766 ~ 43055080 (+)
LOC110500480 LOC106608857 coding upstream 39322 43002686 ~ 43034963 (+)
LOC110500479 LOC106608859 coding upstream 240191 42821715 ~ 42834094 (+)
LOC110500477 LOC106608861 coding upstream 273737 42790604 ~ 42800548 (+)
efs LOC106608851 coding downstream 19594 43098737 ~ 43112481 (+)
LOC110500490 LOC106608850 coding downstream 33647 43112790 ~ 43144423 (+)
LOC118943017 NA coding downstream 36758 43115901 ~ 43116019 (+)
LOC118943016 NA coding downstream 39467 43118610 ~ 43118728 (+)
LOC118943019 NA coding downstream 42949 43122092 ~ 43122193 (+)
G1740211 NA non-coding upstream 86004 42987765 ~ 42988281 (+)
G1740210 NA non-coding upstream 88908 42985101 ~ 42985377 (+)
G1740209 NA non-coding upstream 89279 42984551 ~ 42985006 (+)
G1740206 NA non-coding upstream 92493 42981453 ~ 42981792 (+)
G1740162 NA non-coding upstream 158555 42915508 ~ 42915730 (+)
LOC110500494 LOC106608896 non-coding downstream 79545 43158688 ~ 43161693 (+)
G1740274 NA non-coding downstream 90120 43169263 ~ 43169540 (+)
G1740276 NA non-coding downstream 92233 43171376 ~ 43171589 (+)
G1740299 NA non-coding downstream 120764 43199907 ~ 43200289 (+)
G1740301 NA non-coding downstream 123279 43202422 ~ 43202626 (+)
G1739440 vax2 other upstream 571928 42501349 ~ 42502357 (+)
si:dkey-185m8.2 LOC106608874 other upstream 718958 42354556 ~ 42370239 (+)
cxcl8c cxcl8c other upstream 785785 42285056 ~ 42288500 (+)
G1739103 NA other upstream 1176429 41888811 ~ 41897856 (+)
G1738119 NA other upstream 2045149 41024710 ~ 41029136 (+)
G1740312 r1441 other downstream 176510 43255653 ~ 43327738 (+)
LOC110500499 ubil other downstream 188071 43267057 ~ 43268143 (+)
G1740366 LOC106608832 other downstream 310046 43389189 ~ 43390299 (+)
G1740398 NA other downstream 367907 43447050 ~ 43451167 (+)
G1740412 LOC106608825 other downstream 390675 43469818 ~ 43470325 (+)

Expression


Co-expression Network