LOC110500494 (LOC106608896)


Basic Information

Item Value
gene id LOC110500494
gene name LOC106608896
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 43158688 ~ 43161693 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110500494
CCATGAAAATCCAACATGGCGGCGCCCCTTAAGACATTGCGTAGTACAGCTTAGAGGCATTCCAGTCGTTGTTTTACTACGACTTGTGGGGCACAGGCCGGAATCGAGTGGACGACAGAAAATGGTCTTGCCCGCAGTGGAACAGAGTATGGTCCCCTGACAGATATCCCTGACTGGTTCTTTGCAGATGGCCGGTCGGCACCCCCACTGAAAGGACAGCTGAGgagaaagcaggagagagagacgtTAGCAAGACATGTAGTGAATCTCAGCCCTGAGGTGGATAAAGGGATGGAAGTGTGGAGGGAGAAACGGGAGGAAGCTAAAAGGATCGAGGAACGCAATAAATCTATTTTGCTAAAACCCAAAGGGAACCTTTTattgaagaaaaataaataagaaatCATATTTTCCATTCTAGCTGACATTACCTATTAACAAAATGGTGGAGTTGGTGTATGGCTTTGTAGTACTTATTTTGCCCTTTTCAATGTTTTTATAAAATAAACTTTAATGTATATCCACAA
>TU1992907
ccaccaccaccacctgaagTCCACATAATCATTGTCTAATAGAGCGTGATCAACGTTATTATAATGTAACAAATGTATCATCGCACGTTGCTGCCTGTTACTACTTTCTTTCCAAATCCACCACCTGTTTGCCGTATCTTCAGCACTGCTAGTGGTCAAAACAATCCTCCCATGAAAATCCAACATGGCGGCGCCCCTTAAGACATTGCGTAGTACAGCTTAGAGGCATTCCAGTCGTTGTTTTACTACGACTTGTGGGGCACAGGCCGGAATCGAGTGGACGACAGAAAATGGTCTTGCCCGCAGTGGAACAGAGTATGGTCCCCTGACAGATATCCCTGACTGGTTCTTTGCAGATGGCCGGTCGGCACCCCCACTGAAAGGACAGCTGAGgagaaagcaggagagagagacgtTAGCAAGACATGTAGTGAATCTCAGCCCTGAGGTGGATAAAGGGATGGAAGTGTGGAGGGAGAAACGGGAGGAAGCTAAAAGGATCGAGGAACGCAATAAATCTATTTTGCTAAAACCCAAAGGGAACCTTTTattgaagaaaaataaataagaaatCATATTTTCCATTCTAGCTGACATTACCTATTAACAAAATGGTGGAGTTGGTGTATGGCTTTGTAGTACTTATTTTGCCCTTTTCAATGTTTTTATAAAATAAACTTTAATGTATATCCACA
>TU1992905
CGTATCTTCAGCACTGCTAGTGGTCAAAACAATCCTCCCATGAAAATCCAACATGGCGGCGCCCCTTAAGACATTGCGTAGTACAGCTTAGAGGCATTCCAGTCGTTGTTTTACTACGACTTGTGGGGCACAGGCCGGAATCGAGTGGACGACAGAAAATGGTCTTGCCCGCAGTGGAACAGAGTATGGTCCCCTGACAGATATCCCTGACTGGTTCTTTGCAGATGGCCGGTCGGCACCCCCACTGAAAGGACAGCTGAGgagaaagcaggagagagagacgtTAGCAAGACATGTAGTGAATCTCAGCCCTGAGGTGGATAAAGGGATGGAAGTGTGGAGGGAGAAACGGGAGGAAGCTAAAAGGATCGAGGAACGCAATAAATCTATTTTGCTAAAACCCAAAGGGAACCTTTTattgaagaaaaataaataagaaatCATATTTTCCATTCTAGCTGACATTACCTATTAACAAAATGGTGGAGTTGGTGTATGGCTTTGTAGTACTTATTTTGCCCTTTTCAATGTTTTTATAAAATAAACTTTAATGTATATCCACA
>TU1992904
TGAAAATCCAACATGGCGGCGCCCCTTAAGACATTGCGTAGTACAGCTTAGAGGCATTCCAGTCGTTGTTTTACTACGACTTGTGGGGCACAGGCCGGAATCGAGTGGACGACAGAAAATGGTCTTGCCCGCAGTGGAACAGAGTATGGTCCCCTGACAGATATCCCTGACTGGTTCTTTGCAGATGGCCGGTCGGCACCCCCACTGAAAGGACAGCTGAGgagaaagcaggagagagagacgtTAGCAAGACATGTAGTGAATCTCAGCCCTGAGGTGGATAAAGGGATGGAAGTGTGGAGGGAGAAACGGGAGGAAGCTAAAAGGATCGAGGAACGCAATAAATCTATTTTGCTAAAACCCAAAGGGAACCTTTTattgaagaaaaataaataagaaatCATATTTTCCATTCTAGCTGACATTACCTATTAACAAAATGGTGGAGTTGGTGTATGGCTTTGTAGTACTTATTTTGCCCTTTTCAATGTTTTTATAAAATAAACTTTAATGTATATCCACA

Function

NR:

description
PREDICTED: 39S ribosomal protein L52, mitochondrial-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110500494 False 527 mRNA 0.44 5 43158857 43161693
TU1992907 False 695 lncRNA 0.44 5 43158688 43161692
TU1992905 False 563 lncRNA 0.44 5 43158820 43161692
TU1992904 True 523 lncRNA 0.44 5 43158860 43161692

Neighbor

gene id symbol gene type direction distance location
LOC110500490 LOC106608850 coding upstream 14434 43112790 ~ 43144423 (+)
LOC118943019 NA coding upstream 36664 43122092 ~ 43122193 (+)
LOC118943016 NA coding upstream 40129 43118610 ~ 43118728 (+)
LOC118943017 NA coding upstream 42838 43115901 ~ 43116019 (+)
efs LOC106608851 coding upstream 46376 43098737 ~ 43112481 (+)
LOC110500496 LOC106608847 coding downstream 41846 43203539 ~ 43219682 (+)
LOC118942803 LOC106608806 coding downstream 60646 43222339 ~ 43232208 (+)
LOC110500497 LOC106608843 coding downstream 72953 43234646 ~ 43245107 (+)
LOC110500499 ubil coding downstream 105364 43267057 ~ 43268143 (+)
LOC110500500 LOC106596943 coding downstream 106917 43268610 ~ 43278166 (+)
G1740211 NA non-coding upstream 170576 42987765 ~ 42988281 (+)
G1740210 NA non-coding upstream 173480 42985101 ~ 42985377 (+)
G1740209 NA non-coding upstream 173851 42984551 ~ 42985006 (+)
G1740206 NA non-coding upstream 177065 42981453 ~ 42981792 (+)
G1740162 NA non-coding upstream 243127 42915508 ~ 42915730 (+)
G1740274 NA non-coding downstream 7570 43169263 ~ 43169540 (+)
G1740276 NA non-coding downstream 9683 43171376 ~ 43171589 (+)
G1740299 NA non-coding downstream 38214 43199907 ~ 43200289 (+)
G1740301 NA non-coding downstream 40729 43202422 ~ 43202626 (+)
G1740335 NA non-coding downstream 166702 43328395 ~ 43328602 (+)
G1739440 vax2 other upstream 656500 42501349 ~ 42502357 (+)
si:dkey-185m8.2 LOC106608874 other upstream 803530 42354556 ~ 42370239 (+)
cxcl8c cxcl8c other upstream 870357 42285056 ~ 42288500 (+)
G1739103 NA other upstream 1261001 41888811 ~ 41897856 (+)
G1738119 NA other upstream 2129721 41024710 ~ 41029136 (+)
G1740312 r1441 other downstream 93960 43255653 ~ 43327738 (+)
G1740366 LOC106608832 other downstream 227496 43389189 ~ 43390299 (+)
G1740398 NA other downstream 285357 43447050 ~ 43451167 (+)
G1740412 LOC106608825 other downstream 308125 43469818 ~ 43470325 (+)

Expression


Co-expression Network