LOC118942803 (LOC106608806)


Basic Information

Item Value
gene id LOC118942803
gene name LOC106608806
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 43222339 ~ 43232208 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036956512.1
ATGAAGCTCGTAGCTGTTCGATCTACTGCTGATGTCATGTCAGTCCAACAGATCCGTCTCTGTGATCTCTTCCCCGAGATGAGGCTTCTGTGGAGGGGCGGCTCCTGTGGAAGGGCTATGATTATGCCTTCACCCCCCTCCCTCAGCAGGCCGTGGGTTtggatggtggtggtggtcatATGGCTCCCTGGTGCTCTGGAGAAGTGTATCTTTGATGAGGTTCAGCAGTCGGTCACAGTGGTCACCACACCCACGGATCCAGACGGACCTCACCCTAAGACGACGGCCAGTAACAATGTTGGGCTTCAGACTCGACTTACTGCTTCAGAGGACACAGCTAATCCTTTTCAAATTCCTTCATTTGCGCTTCAACTTTCTTCATCCCGGAGACACCACAGGAAGCGCACAAGAGAGCTGGCTCCACCCACAAACCATCCACAGCCAATCAGGATCCACACCTGGGTTCCGAGGGATAGCCCTGCCCTGTCTCAGGTGGAAAGCGAGAGACTGGAGCCAGCAGTCAGGGAGGCTGTGGGCATCGTGTCCAACTTGCTGTCAGTAAACAGAGTCCCTGGTCATCTGCTGCTCAGCAGAAACATCAACAAGTACTGCAAGTTCATATGGCGGAACGCCAGCGCTGCCAACTATAACAAGTGTGGCCGAGCCAATGAGAACTACAGGACGGAGACCTGTCTGGATGTCATTATCCCAGATGATCACCTGAGGGGTTGTTCCGTGTACTCAGAGCCTGATGCACCAACCATGACTGTGATAAGGCCTGAGGGGGCGGGACTTCCTGACACTGACTTCCTACTTTACCTCCACGCGCAGAGCACCGACAAGTGTCGAGCGGAGCATATATCCCAGCCCAGTGTGTTGGCCTATGCAGTGCACTGCCAGACTGACTCCCAGGGTCGACCTCTGGCTGGAGTGGTGGTCATCTGTAGGGACAGACTGACTGGGGAGGGATATAGCCACCAAGGCACTGTGCAGACAGTGATCCATGAGTTGTTCCATGCATTGGGATTCTCCAAAGAACTCTTCAGCACCTGGAGAGACTGCTCCTACTCACAACCTGGGATGGGCTGCTCCCCCTGGGGTCAGGTGACTAACACAGATGAGACAGGTCAGGTCAGGATCTACACCCAATCAGTGATCAGAGCCCTGCAGGAACACCTGTTATCTACTGACCCTGACCTTGGAGGACCACTGGAGAACCTGGATGTAGGTTCTAGTGGTCTGTCCTCTCACTGGGAGTCCAGGGTGCTACAGGGTTCCATCATGGCTGCAGCCCTGGGGGATCCAGCTGTGGTGCGTGTCGACCCGGTCACCCTGGCCGCCCTACAGGACACGGGCTGGTACTCTGTCAACCACAGCCGAGCACAGGGCCTGGTGTGGGGAAAGGGTGAGGGAGCAATGTTTGGATTACTGTCCACCTGCCATGACAACTCCTCCTCATTTTTCTGCACAGGCAGTGGTTTAGGGTGTCATTATCTTCACCGCCACAAGGGGGAGTGCCAGACTGACGCTCACCTGGATGGGTGCCGCATTTACAAACCTCTAATGAGTGAGTGCTGGaaagaggagaatgagagagagactgaaacagaGTGGAGTGGAGAGTTGTACCGTATAGACAGCCGATGCTTCTTCTCTAACCTGAGCagagagaatGTCTCCCTGTCCGTCAGCGACTCTGTGGTGGGGCGTTGTTATAGACACAGGTGTACTGGGCTGAACCGGTATCAGATACAGGTGTCTGGCTCTGACTGGTTGGATTGCCCAGTAGGAAGCACCATTGAGGTGACAGGTTACAGGGGGCTAGTTGCATGTCCCGACAAGAGGTTGTGTTATTACCCTGACATTGGTCTCTCCATCGACAACCAGGACCCCCACTCTCCAGCTGCCTCTACTAAAGGCACAGTGACTACTGAGAACGATCCCCTGTTACATCAGAACACAATCCCTGACCCGAGCCTGACCTTTGACCCTGCCGCTACGTGTGCAGAACCAGGGGTCAGTACAGACACCACGTTGGCTGCAGTCCTGGGGGTCAGTGCTGCTGTCTGTCTCCTGGCTGCCCTGATGGTGGCCTACAGGAGGTACCGCTTTTCCAGAGTCAGGGTGCATGCTGCCCCTGAGGCCCCCAGTGTTCTGCAGTTGCACTCGACCCAAAGTGATTCAAATAACTGCTAATGGAAACTGGGTGTCCATTATAGCACAGTCTTGTGCACGCACTGGTGTAAATGGTTACTTAATCAAGTAGGTGGTGTTTGTTCATTATTTATCAGAGGGGGAAATTGACTATTTGTTAAGTGTTGAACTGTACAAATGAAAAAAGTACAATAGAGTAAAGAGCAATGCGATGCTGAGGTGTTCTAATTGTCCCCTGGATTTGTTGTTCAACATGGATTTAGCTTTAACACTATGTTAACCTGTAATAACAATGAATTATGTGAGCGTTTTCTGTGTCTTATCCCTGTGGTATACATTTTACTCATACAA

Function

NR:

description
leishmanolysin-like peptidase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036956512.1 True 2505 mRNA 0.53 14 43222339 43232208

Neighbor

gene id symbol gene type direction distance location
LOC110500496 LOC106608847 coding upstream 2657 43203539 ~ 43219682 (+)
LOC110500494 LOC106608896 coding upstream 60646 43158688 ~ 43161693 (+)
LOC110500490 LOC106608850 coding upstream 77916 43112790 ~ 43144423 (+)
LOC110500497 LOC106608843 coding downstream 2438 43234646 ~ 43245107 (+)
LOC110500499 ubil coding downstream 34849 43267057 ~ 43268143 (+)
LOC110500500 LOC106596943 coding downstream 36402 43268610 ~ 43278166 (+)
LOC110500501 NA coding downstream 54982 43287190 ~ 43299305 (+)
LOC110500503 LOC106608839 coding downstream 72885 43305093 ~ 43323874 (+)
G1740301 NA non-coding upstream 19713 43202422 ~ 43202626 (+)
G1740299 NA non-coding upstream 22050 43199907 ~ 43200289 (+)
G1740276 NA non-coding upstream 50750 43171376 ~ 43171589 (+)
G1740274 NA non-coding upstream 52799 43169263 ~ 43169540 (+)
G1740335 NA non-coding downstream 96187 43328395 ~ 43328602 (+)
G1740336 LOC106565892 non-coding downstream 96695 43328903 ~ 43329165 (+)
G1740337 NA non-coding downstream 97862 43330070 ~ 43330342 (+)
G1740339 NA non-coding downstream 99922 43332130 ~ 43332567 (+)
G1740340 NA non-coding downstream 101268 43333476 ~ 43333693 (+)
G1739440 vax2 other upstream 719982 42501349 ~ 42502357 (+)
si:dkey-185m8.2 LOC106608874 other upstream 867012 42354556 ~ 42370239 (+)
cxcl8c cxcl8c other upstream 933839 42285056 ~ 42288500 (+)
G1739103 NA other upstream 1324483 41888811 ~ 41897856 (+)
G1738119 NA other upstream 2193203 41024710 ~ 41029136 (+)
G1740312 r1441 other downstream 23445 43255653 ~ 43327738 (+)
G1740366 LOC106608832 other downstream 156981 43389189 ~ 43390299 (+)
G1740398 NA other downstream 214842 43447050 ~ 43451167 (+)
G1740412 LOC106608825 other downstream 237610 43469818 ~ 43470325 (+)

Expression


Co-expression Network