LOC110500499 (ubil)


Basic Information

Item Value
gene id LOC110500499
gene name ubil
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 43267057 ~ 43268143 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002470116.2
GCATTCATTTGAGGATGTTCTCATAACATGTGCAGCGTTGTAATGCAGATAAACCTGTATCAGCTGGCGGATCTCAGTCACCACATGTATTGAGTCAAACGTGTTTATTGTTAATTTACTTTGATGGAATTCCCCTGAGATCCCAAGTCACTGTACCTACTCTCAGTTTAATTTCTGTACTCAAAAGTTAGGTTTGTTTATTATTTGTCATGTGCTTCTGAGAAGGAGGAGCATTTTGCCTTCCTTATTCTCTCACATACAAACAGTTACACCAATTGACAGAACAACTCGGACACCTGAGCAGCTCACGCACATTCATAACCATGGGAAAGATCTACCAGGTCATCGTGATTGGATTCAGAGGGGAGAAAATGGTTATAGACGTGAGCAATACGGAAGAACAAATGAACAGTATGACAGTACTGCAACTGAAAAATAAAATTTCTGAAAGACTCCCGGGGAACTCAGGGGACAATCTGGAGACCCTGCGACTGATTTTCACAAACAAACAGCTGGAGGACTCGTCAGTGCTCTCCTCATATGGGATCCAGAACCAGTCTGTCATTCAGCTAGTGATGAGGGTGCCTGGGGGATGGAGACATTGACgattggagagaagagagaatctCTGCCTGCATTTTGATGTCTTTTTAATACTGTAGTCTTGTTATATTAATCTCACTGCCAATCCCATTGCCAAACCACACGAAGGAACTGATGTTGATAAATGTATGGGCTCTTTCTTAAACAAAATATAAACAACATGTGGCCAGAAAGCATTTAGTTTATTCTCTGAACCTGCTACCAGAACTTCtcaattcatttttattttatctgTGACTTCATTGTATGGAAgtcttcaacaacaacaatattcaACAATAAATTAATGTTCTCCCAA
>TU1993035
TACTCTCAGTTTAATTTCTGTACTCAAAAGTTAGGTTTGTTTATTATTTGTCATGTGCTTCTGAGAAGGAGGAGCATTTTGCCTTCCTTATTCTCTCACATACAAACAGTTACACCAATTGACAGAACAACTCGGACACCTGAGCAGCTCACGCACATTCATAACCATGGGAAAGATCTACCAGGTCATCGTGATTGGATTCAGAGGGGAGAAAATGGTTATAGACGTGAGCAATACGGAAGAACAAATGAACAGTATGACAGTACTGCAACTGAAAAATAAAATTTCTGAAAGACTCCCGGGGAACTCAGGGGACAATCTGGAGACCCTGCGACTGATTTTCACAAACAAACAGCTGGAGGACTCGTCAGTGCTCTCCTCATATGGGATCCAGAACCAGTCTGTCATTCAGCTAGTGATGAGGGTGCCTGGGGGATGGAGACATTGACgattggagagaagagagaatctCTGCCTGCATTTTGATGTCTTTTTAATACTGTAGTCTTGTTATATTAATCTCACTGCCAATCCCATTGCCAAACCACACGAAGGAACTGATGTTGATAAATGTATGGGCTCTTTCTTAAACAAAATATAAACAACATGTGGCCAGAAAGCATTTAGTTTATTCTCTGAACCTGCTACCAGAACTTCtcaattcatttttattttatctgTGACTTCATTGTATGGAAgtcttcaacaacaacaatattcaACAATAAATTAATGTTCTCCCAAT
>TU1993034
ATTGACAGAACAACTCGGACACCTGAGCAGCTCACGCACATTCATAACCATGGGAAAGATCTACCAGGTCATCGTGATTGGATTCAGAGGGGAGAAAATGGTTATAGACGTGAGCAATACGGAAGAACAAATGAACAGTATGACAGTACTGCAACTGAAAAATAAAATTTCTGAAAGACTCCCGGGGAACTCAGGGGACAATCTGGAGACCCTGCGACTGATTTTCACAAACAAACAGCTGGAGGACTCGTCAGTGCTCTCCTCATATGGGATCCAGAACCAGTCTGTCATTCAGCTAGTGATGAGGGTGCCTGGGGGATGGAGACATTGACgattggagagaagagagaatctCTGCCTGCATTTTGATGTCTTTTTAATACTGTAGTCTTGTTATATTAATCTCACTGCCAATCCCATTGCCAAACCACACGAAGGAACTGATGTTGATAAATGTATGGGCTCTTTCTTAAACAAAATATAAACAACATGTGGCCAGAAAGCATTTAGTTTATTCTCTGAACCTGCTACCAGAACTTCtcaattcatttttattttatctgTGACTTCATTGTATGGAAgtcttcaacaacaacaatattcaACAATAAATTAATGTTCTCCCAAT

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002470116.2 False 901 mRNA 0.40 2 43267057 43268142
TU1993035 False 745 TUCP 0.40 2 43267214 43268143
TU1993034 True 628 TUCP 0.41 2 43267331 43268143

Neighbor

gene id symbol gene type direction distance location
LOC110500497 LOC106608843 coding upstream 21950 43234646 ~ 43245107 (+)
LOC118942803 LOC106608806 coding upstream 34849 43222339 ~ 43232208 (+)
LOC110500496 LOC106608847 coding upstream 47375 43203539 ~ 43219682 (+)
LOC110500494 LOC106608896 coding upstream 105364 43158688 ~ 43161693 (+)
LOC118943019 NA coding upstream 144864 43122092 ~ 43122193 (+)
LOC110500500 LOC106596943 coding downstream 468 43268610 ~ 43278166 (+)
LOC110500501 NA coding downstream 19048 43287190 ~ 43299305 (+)
LOC110500503 LOC106608839 coding downstream 36951 43305093 ~ 43323874 (+)
LOC110500504 NA coding downstream 67538 43335680 ~ 43345779 (+)
oxa1l LOC106608836 coding downstream 78272 43346414 ~ 43354437 (+)
G1740301 NA non-coding upstream 64431 43202422 ~ 43202626 (+)
G1740299 NA non-coding upstream 66768 43199907 ~ 43200289 (+)
G1740276 NA non-coding upstream 95468 43171376 ~ 43171589 (+)
G1740274 NA non-coding upstream 97517 43169263 ~ 43169540 (+)
G1740335 NA non-coding downstream 60253 43328395 ~ 43328602 (+)
G1740336 LOC106565892 non-coding downstream 60761 43328903 ~ 43329165 (+)
G1740337 NA non-coding downstream 61928 43330070 ~ 43330342 (+)
G1740339 NA non-coding downstream 63988 43332130 ~ 43332567 (+)
G1740340 NA non-coding downstream 65334 43333476 ~ 43333693 (+)
G1739440 vax2 other upstream 764700 42501349 ~ 42502357 (+)
si:dkey-185m8.2 LOC106608874 other upstream 911730 42354556 ~ 42370239 (+)
cxcl8c cxcl8c other upstream 978557 42285056 ~ 42288500 (+)
G1739103 NA other upstream 1369201 41888811 ~ 41897856 (+)
G1738119 NA other upstream 2237921 41024710 ~ 41029136 (+)
G1740366 LOC106608832 other downstream 121047 43389189 ~ 43390299 (+)
G1740398 NA other downstream 178908 43447050 ~ 43451167 (+)
G1740412 LOC106608825 other downstream 201676 43469818 ~ 43470325 (+)
G1740453 NA other downstream 256594 43524736 ~ 43526726 (+)
G1740752 NA other downstream 944644 44212786 ~ 44213230 (+)

Expression


Co-expression Network