LOC110500500 (LOC106596943)


Basic Information

Item Value
gene id LOC110500500
gene name LOC106596943
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 43268610 ~ 43278166 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021577894.2
CAGGAATAGCCGAAATCGAAAGTGAAGCCGGTTCAACGTCGTTGTTTTTCCTTAGAGGTGACAACTCGAAGGGACGCTTTTCGGCTACAAGAATACACGAATAAATCGGTCATTAAGTGGGTGTTCTATGGCGTTTATTTGGACTGTGAAACCTACTGTAAACAATGGAGCTGAACATTTCAACAAGACACTGCCGAGGCTCGAAAGCATACTTCCCACCCCAGGACCAGAACACCATGGCCTGTATAATCAAGGGGCAACGTGTTATTTGAACAGTGTGCTGCAGGTCCTCTTCATGACTAAAGAATTCAGAGAGGCTGTTGAAAGtaataGGCCTCCTCAAGAAGAAGACACTGTTGATCTTCAGCTGAAAAAGTTGTTTACAACTTTACGTGAAATTGAAACTAACACAAAGGGCATCTCATCAATACTAGGCATTGATGATGTATACATGCAATGTGATGCGGCTGAGTATTTTGAGAAGATTTTAGGCATGGTCAATCCTGAAGTGTCAAAGATCTTCAAAGGACAATTGAGGCACATCACTACCTGTTTAGGAAAACATGTGATGAGTGATGGATTTGGTCCATTTTGGACACTGCCCCTCTCAATAGCAGATCCCTCTGACTCTTACAAAACCTACAGTGTGAAAGATGGCTTTAAGGAGTTCTTCAAGTCTACATCTGTCACTGGGGAAAACCAGATGTACTGTGATGAATGTGAAAAGAAATTAGATGCAACCATTGAATGCAAGATGGAATATCACCCAGAAATTCTTACTCTGCTCCTCAAGCGGTTTGAATTTGACTACTACAGCATGTCATATGTCAAAATCAACTGCTGTGTGGATGTGCCTCACACACTCCAGACAGAGAAATGTGAATATGAACTCTATGCGATTGTGGACCATTTCGGAAGTCTTGGATGTGGACACTACACTGCTAAGATCAAGTCCTTTGAAGATCATAACTGGTATGAGTTCAATGACTCATACGTTACAAAGGTCCAACCAGCTCCACTGATTGACAGTTCTTGGAGTGCTTATCTACTGGTGTACAGGAAATCACATGCTTCAGATCGTGAGAACCATGGAACCAACCAAGTTCGCGGTTCACTCCGAGAGGATGGGGTTACAGAGGTTGGAGAGCATGTTCAAAAAAAGACAAGTGGAGATGATCATCACGGGGTTGATGGAAATAAAGGACAGGGACCACATGTTGCGGTCAGAAGAAAGGAAAATGTAGGAAAGGCAGATACAGGAAGAGATGACGATTTGatagagagaagacaggagacagatgcacacaggagagaggatgtggaTGGAACAAGACGGTATGATGTGGTTTTGATAACAGAGAAACAGCAGACTCCAGAGATATGTCAGAAATTAGGCAGACTCCGTGTGTTTCATCATGACTATATTTTGCCCATCAGGTGTTCATCATGGAAAGAAGAGGATAATGCTGTGGAGAAAATAGAACAGGATGATGTAGTGAGAAGGGTAGATAAGGACAGAGAGGGTGTCGTGGTAAAGGGAGAAACGCATCTCGGTGAGACAAAGACAAGTCTGACCAAGTACGGAGAGTCTTCCAGCTCTACAAATAGGTGTGAGACCATCCCATCACACCAAGAGTTCAATGAAGTCAGAAGGAAAGAAATGCAAAGAAGAAAGGACGAAAAGGATGCCAATTACAGTCAGTTCCTTGCTAACGTGCAGGACAACAAGCTGAGAGAGGTTCTTGAGAGGCAGAAGAAGAACAAGGCTCACTGTGGTTTCAGGCGCTTCTGGGGTGTCCGTGGCAAGTACACCAAGGCCATCGGTCGCAGTGGTCGCGTCGTTGGTATGTCTAAGAAGAAGTAAACTATGTCCCAACTCCCCATGTGTCAATAAATGCCACAGTTCACACACAAAAACGATGGAAGAAGAATGAAAAGAGAAGTGTAGAAGAGATGGAGCTTTTGAGTAAAGACAAGAAAAGAAGAAAGAGGAACttcagggaaggagaggagggaatggAAAAGAAGTGAGATGGCTAAATTTGAAGTTTCTGTTTTGTCCAATTTGAAAACTGGAAGAGGAATGTATGGAATATGGAATATATTCTGATTTTGGGAACAATTCTGCCTTTAACCCTGTATTATCTTTTTATAAATGTTTAACAACTAACTTTAACTAAAGTCCTGTTATTAGCCTCTTTTATGTTCAACATCGTTCATCACTTTACTCAGATGACTTTCTTGTCCAAGTGTTTACAAAGTACTGTATATTAAAGATGCTTTGTATGTAGAGAA
>XM_021577895.2
CAGGAATAGCCGAAATCGAAAGTGAAGCCGGTTCAACGTCGTTGTTTTTCCTTAGAGGTGACAACTCGAAGGGACGCTTTTCGGCTACAAGAATACACGAATAAATCGGTCATTAAGTGGGTGTTCTATGGCGTTTATTTGGACTGTGAAACCTACTGTAAACAATGGAGCTGAACATTTCAACAAGACACTGCCGAGGCTCGAAAGCATACTTCCCACCCCAGGACCAGAACACCATGGCCTGTATAATCAAGGGGCAACGTGTTATTTGAACAGTGTGCTGCAGGTCCTCTTCATGACTAAAGAATTCAGAGAGGCTGTTGAAAGtaataGGCCTCCTCAAGAAGAAGACACTGTTGATCTTCAGCTGAAAAAGTTGTTTACAACTTTACGTGAAATTGAAACTAACACAAAGGGCATCTCATCAATACTAGGCATTGATGATGTATACATGCAATGTGATGCGGCTGAGTATTTTGAGAAGATTTTAGGCATGGTCAATCCTGAAGTGTCAAAGATCTTCAAAGGACAATTGAGGCACATCACTACCTGTTTAGGAAAACATGTGATGAGTGATGGATTTGGTCCATTTTGGACACTGCCCCTCTCAATAGCAGATCCCTCTGACTCTTACAAAACCTACAGTGTGAAAGATGGCTTTAAGGAGTTCTTCAAGTCTACATCTGTCACTGGGGAAAACCAGATGTACTGTGATGAATGTGAAAAGAAATTAGATGCAACCATTGAATGCAAGATGGAATATCACCCAGAAATTCTTACTCTGCTCCTCAAGCGGTTTGAATTTGACTACTACAGCATGTCATATGTCAAAATCAACTGCTGTGTGGATGTGCCTCACACACTCCAGACAGAGAAATGTGAATATGAACTCTATGCGATTGTGGACCATTTCGGAAGTCTTGGATGTGGACACTACACTGCTAAGATCAAGTCCTTTGAAGATCATAACTGGTATGAGTTCAATGACTCATACGTTACAAAGGTCCAACCAGCTCCACTGATTGACAGTTCTTGGAGTGCTTATCTACTGGTGTACAGGAAATCACATGCTTCAGATCGTGAGAACCATGGAACCAACCAAGTTCGCGGTTCACTCCGAGAGGATGGGGTTACAGAGGTTGGAGAGCATGTTCAAAAAAAGACAAGTGGAGATGATCATCACGGGGTTGATGGAAATAAAGGACAGGGACCACATGTTGCGGTCAGAAGAAAGGAAAATGTAGGAAAGGCAGATACAGGAAGAGATGACGATTTGatagagagaagacaggagacagatgcacacaggagagaggatgtggaTGGAACAAGACGGTGTTCATCATGGAAAGAAGAGGATAATGCTGTGGAGAAAATAGAACAGGATGATGTAGTGAGAAGGGTAGATAAGGACAGAGAGGGTGTCGTGGTAAAGGGAGAAACGCATCTCGGTGAGACAAAGACAAGTCTGACCAAGTACGGAGAGTCTTCCAGCTCTACAAATAGGTGTGAGACCATCCCATCACACCAAGAGTTCAATGAAGTCAGAAGGAAAGAAATGCAAAGAAGAAAGGACGAAAAGGATGCCAATTACAGTCAGTTCCTTGCTAACGTGCAGGACAACAAGCTGAGAGAGGTTCTTGAGAGGCAGAAGAAGAACAAGGCTCACTGTGGTTTCAGGCGCTTCTGGGGTGTCCGTGGCAAGTACACCAAGGCCATCGGTCGCAGTGGTCGCGTCGTTGGTATGTCTAAGAAGAAGTAAACTATGTCCCAACTCCCCATGTGTCAATAAATGCCACAGTTCACACACAAAAACGATGGAAGAAGAATGAAAAGAGAAGTGTAGAAGAGATGGAGCTTTTGAGTAAAGACAAGAAAAGAAGAAAGAGGAACttcagggaaggagaggagggaatggAAAAGAAGTGAGATGGCTAAATTTGAAGTTTCTGTTTTGTCCAATTTGAAAACTGGAAGAGGAATGTATGGAATATGGAATATATTCTGATTTTGGGAACAATTCTGCCTTTAACCCTGTATTATCTTTTTATAAATGTTTAACAACTAACTTTAACTAAAGTCCTGTTATTAGCCTCTTTTATGTTCAACATCGTTCATCACTTTACTCAGATGACTTTCTTGTCCAAGTGTTTACAAAGTACTGTATATTAAAGATGCTTTGTATGTAGAGAA

Function

NR:

description
ubiquitin carboxyl-terminal hydrolase 64E-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021577894.2 False 2295 mRNA 0.42 12 43268610 43278166
XM_021577895.2 True 2193 mRNA 0.42 13 43268610 43278166

Neighbor

gene id symbol gene type direction distance location
LOC110500499 ubil coding upstream 468 43267057 ~ 43268143 (+)
LOC110500497 LOC106608843 coding upstream 23503 43234646 ~ 43245107 (+)
LOC118942803 LOC106608806 coding upstream 36402 43222339 ~ 43232208 (+)
LOC110500496 LOC106608847 coding upstream 48928 43203539 ~ 43219682 (+)
LOC110500494 LOC106608896 coding upstream 106917 43158688 ~ 43161693 (+)
LOC110500501 NA coding downstream 9024 43287190 ~ 43299305 (+)
LOC110500503 LOC106608839 coding downstream 26927 43305093 ~ 43323874 (+)
LOC110500504 NA coding downstream 57514 43335680 ~ 43345779 (+)
oxa1l LOC106608836 coding downstream 68248 43346414 ~ 43354437 (+)
LOC110500510 ccnb1ip1 coding downstream 104715 43382881 ~ 43385078 (+)
G1740301 NA non-coding upstream 65984 43202422 ~ 43202626 (+)
G1740299 NA non-coding upstream 68321 43199907 ~ 43200289 (+)
G1740276 NA non-coding upstream 97021 43171376 ~ 43171589 (+)
G1740274 NA non-coding upstream 99070 43169263 ~ 43169540 (+)
G1740335 NA non-coding downstream 50229 43328395 ~ 43328602 (+)
G1740336 LOC106565892 non-coding downstream 50737 43328903 ~ 43329165 (+)
G1740337 NA non-coding downstream 51904 43330070 ~ 43330342 (+)
G1740339 NA non-coding downstream 53964 43332130 ~ 43332567 (+)
G1740340 NA non-coding downstream 55310 43333476 ~ 43333693 (+)
G1739440 vax2 other upstream 766253 42501349 ~ 42502357 (+)
si:dkey-185m8.2 LOC106608874 other upstream 913283 42354556 ~ 42370239 (+)
cxcl8c cxcl8c other upstream 980110 42285056 ~ 42288500 (+)
G1739103 NA other upstream 1370754 41888811 ~ 41897856 (+)
G1740366 LOC106608832 other downstream 111023 43389189 ~ 43390299 (+)
G1740398 NA other downstream 168884 43447050 ~ 43451167 (+)
G1740412 LOC106608825 other downstream 191652 43469818 ~ 43470325 (+)
G1740453 NA other downstream 246570 43524736 ~ 43526726 (+)
G1740752 NA other downstream 934620 44212786 ~ 44213230 (+)

Expression


Co-expression Network