LOC110500504


Basic Information

Item Value
gene id LOC110500504
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 43335680 ~ 43345779 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005038608.1
tctcattggctagaatggccCCACGTGATCTCGCCTCCTCTCTCTAAGGAAGAGAATCCTGTTAGACCTgaccatctcgtcattatataaaTATCTCTGGCATAACTTTAGTATGACATAGTTCTTTCTGTTGGTTGGTCTGGTCAATATCAAAGATTATGCAGACTGTCTCTGCGGACCCCTGGGAGATTACGCGCAGCTCTATAAAACTGGGGAGGCGCCTGGGCGAAGGTTTCTTTGGAGTGGTCTATCAAGGCCTCTATAACAACACTCCAGTTGCAGTGAAGACCCTTAGACATGGCACCATGGACCCTCGGGACTTCCTAAAAGAGGCCCAGATCATGAAGACTATGGAGCATCCTAACCTCATCCAGCTCTTGGCTGTCTGCACTGAAGAACCCATCTACATCATCACTGAGCTAATGAAGAACGGAAGTCTGCTGGATTACCTGAAGGTCAGGGTTGGAAGGCTACATTTAAATGACCAGATTGAGATGGCAGCCCAAGTGGCTTCTGGGATGGCTTATCTGGAGATgaagaaatacatccacagggacCTGGCAGCCAGGAATGTGCTGGTCGGCGAGAACAACGTCTACAAGGTGGCTGACTTTGGCCTTGCCAGGGTCTTACAAGCCCCACCGAATCAGACCAACCTGTATTATATACCTGTAGGGAAAGCGATATTCCCTTTGAGATGGACGGCTCCTGAGGCCATCGCCAACGAGAAGTTCACCATCAAGTGTGACGTGTGGTCCTTCGGAATCTTGCTGTATGAGATCATGACCTTTGGGGAGATGCCCTATCCAGTGCTGTCCGGTCAGAACATGATGTTGAGGCCCATACTGAACACAGACACTGCTGTTTCCATTTGAAGATGTTACATGATCGTGGAAGTCCGAATGACTTGGAATCTCATTGTTGTGGTTCTATAAGACAAAGAGATGAACGCATACATGAACAACTCCCAGGTGAAACAGAGGGTTCCCAATGGGTACAGGATGCCTCGCCCTGTTGACCCCTACTGTTCCCAAGACATGTACAAGATCATGTTGGACTGCTGGAATGGGAATAAAAATGACAGGCCCAC
>XM_036957911.1
tctcattggctagaatggccCCACGTGATCTCGCCTCCTCTCTCTAAGGAAGAGAATCCTGTTAGACCTgaccatctcgtcattatataaaTATCTCTGGCATAACTTTAGTATGACATAGTTCTTTCTGTTGGTTGGTCTGGTCAATATCAAAGATTATGCAGACTGTCTCTGCGGACCCCTGGGAGATTACGCGCAGCTCTATAAAACTGGGGAGGCGCCTGGGCGAAGGTTTCTTTGGAGTGGTCTATCAAGGCCTCTATAACAACACTCCAGTTGCAGTGAAGACCCTTAGACATGGCACCATGGACCCTCGGGACTTCCTAAAAGAGGCCCAGATCATGAAGACTATGGAGCATCCTAACCTCATCCAGCTCTTGGCTGTCTGCACTGAAGAACCCATCTACATCATCACTGAGCTAATGAAGAACGGAAGTCTGCTGGATTACCTGAAGGTCAGGGTTGGAAGGCTACATTTAAATGACCAGATTGAGATGGCAGCCCAAGTGGCTTCTGGGATGGCTTATCTGGAGATgaagaaatacatccacagggacCTGGCAGCCAGGAATGTGCTGGTCGGCGAGAACAACGTCTACAAGGTGGCTGACTTTGGCCTTGCCAGGGTCTTACAAGCCCCACCGAATCAGACCAACCTGTATTATATACCTGTAGGGAAAGCGATATTCCCTTTGAGATGGACGGCTCCTGAGGCCATCGCCAACGAGAAGTTCACCATCAAGTGTGACGTGTGGTCCTTCGGAATCTTGCTGTATGAGATCATGACCTTTGGGGAGATGCCCTATCCAGTTCATCTTATTGTTTCAGACATGAACAACTCCCAGGTGAAACAGAGGGTTCCCAATGGGTACAGGATGCCTCGCCCTGTTGACCCCTACTGTTCCCAAGACATGTACAAGATCATGTTGGACTGCTGGAATGGGAATAAAAATGACAGGCCCACTTTCGAGGCTCTGAAAATGAGTCTGAGGAACGTTAGAGGTTGAAGATTTATGTAATCACTCTTGAGTATCGATTAAATAGCAGTAATTAAATGTTAGTCTTGTTTCTCAGCTCTGTCATCTCTTTTTGAGAGTCTGGAATGTTCCTTAGTGTTGTGTGTTACTGAAGACTATCTTAAATTGCTACCATGACCACATTGCTGATTTTACTGACTGCGCTGTGAAGGGATAAAAGTTGATGTCATCTCTGCTGTCTTCAGACATGGTGTGTGCTTCCAAATTAAACCTTTTCTTTCTGCCTTTA
>XM_036957912.1
tcattggctagaatggccCCACGTGATCTCGCCTCCTCTCTCTAAGGAAGAGAATCCTGTTAGACCTgaccatctcgtcattatataaaTATCTCTGGCATAACTTTAGTATGACATAGTTCTTTCTGTTGGTTGGTCTGGTCAATATCAAAGATTATGCAGACTGTCTCTGCGGACCCCTGGGAGATTACGCGCAGCTCTATAAAACTGGGGAGGCGCCTGGGCGAAGGTTTCTTTGGAGTGGTCTATCAAGGCCTCTATAACAACACTCCAGTTGCAGTGAAGACCCTTAGACATGGCACCATGGACCCTCGGGACTTCCTAAAAGAGGCCCAGATCATGAAGACTATGGAGCATCCTAACCTCATCCAGCTCTTGGCTGTCTGCACTGAAGAACCCATCTACATCATCACTGAGCTAATGAAGAACGGAAGTCTGCTGGATTACCTGAAGGTCAGGGTTGGAAGGCTACATTTAAATGACCAGATTGAGATGGCAGCCCAAGTGGCTTCTGGGATGGCTTATCTGGAGATgaagaaatacatccacagggacCTGGCAGCCAGGAATGTGCTGGTCGGCGAGAACAACGTCTACAAGGTGGCTGACTTTGGCCTTGCCAGGGTCTTACAAGCCCCACCGAATCAGACCAACCTGTATTATATACCTGTAGGGAAAGCGATATTCCCTTTGAGATGGACGGCTCCTGAGGCCATCGCCAACGAGAAGTTCACCATCAAGTGTGACGTGTGGTCCTTCGGAATCTTGCTGTATGAGATCATGACCTTTGGGGAGATGCCCTATCCAGACATGAACAACTCCCAGGTGAAACAGAGGGTTCCCAATGGGTACAGGATGCCTCGCCCTGTTGACCCCTACTGTTCCCAAGACATGTACAAGATCATGTTGGACTGCTGGAATGGGAATAAAAATGACAGGCCCACTTTCGAGGCTCTGAAAATGAGTCTGAGGAACGTTAGAGGTTGAAGATTTATGTAATCACTCTTGAGTATCGATTAAATAGCAGTAATTAAATGTTAGTCTTGTTTCTCAGCTCTGTCATCTCTTTTTGAGAGTCTGGAATGTTCCTTAGTGTTGTGTGTTACTGAAGACTATCTTAAATTGCTACCATGACCACATTGCTGATTTTACTGACTGCGCTGTGAAGGGATAAAAGTTGATGTCATCTCTGCTGTCTTCAGACATGGTGTGTGCTTCCAAATTAAACCTTTTCTTTCTGCCTTTA

Function

NR:

description
tyrosine-protein kinase SRK2-like isoform X2

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0000166 nucleotide binding molecular_function
GO:0004672 protein kinase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005038608.1 False 1090 mRNA 0.49 6 43335680 43345477
XM_036957911.1 False 1266 mRNA 0.46 5 43335680 43345779
XM_036957912.1 True 1246 mRNA 0.47 5 43335682 43345779

Neighbor

gene id symbol gene type direction distance location
LOC110500503 LOC106608839 coding upstream 11806 43305093 ~ 43323874 (+)
LOC110500501 NA coding upstream 36375 43287190 ~ 43299305 (+)
LOC110500500 LOC106596943 coding upstream 57514 43268610 ~ 43278166 (+)
LOC110500499 ubil coding upstream 67538 43267057 ~ 43268143 (+)
LOC110500497 LOC106608843 coding upstream 90573 43234646 ~ 43245107 (+)
oxa1l LOC106608836 coding downstream 635 43346414 ~ 43354437 (+)
LOC110500510 ccnb1ip1 coding downstream 37102 43382881 ~ 43385078 (+)
LOC118942788 NA coding downstream 51775 43397554 ~ 43404747 (+)
LOC110500847 NA coding downstream 59719 43405498 ~ 43409042 (+)
LOC118942933 NA coding downstream 667074 44012853 ~ 44019901 (+)
G1740340 NA non-coding upstream 1987 43333476 ~ 43333693 (+)
G1740339 NA non-coding upstream 3113 43332130 ~ 43332567 (+)
G1740337 NA non-coding upstream 5338 43330070 ~ 43330342 (+)
G1740336 LOC106565892 non-coding upstream 6515 43328903 ~ 43329165 (+)
G1740335 NA non-coding upstream 7078 43328395 ~ 43328602 (+)
G1740367 LOC106608832 non-coding downstream 39448 43385227 ~ 43386232 (+)
G1740388 NA non-coding downstream 84504 43430283 ~ 43432161 (+)
G1740411 NA non-coding downstream 117074 43462853 ~ 43463081 (+)
G1740408 NA non-coding downstream 119051 43464830 ~ 43466342 (+)
G1740312 r1441 other upstream 7942 43255653 ~ 43327738 (+)
G1739440 vax2 other upstream 833323 42501349 ~ 42502357 (+)
si:dkey-185m8.2 LOC106608874 other upstream 980353 42354556 ~ 42370239 (+)
cxcl8c cxcl8c other upstream 1047180 42285056 ~ 42288500 (+)
G1740366 LOC106608832 other downstream 43410 43389189 ~ 43390299 (+)
G1740398 NA other downstream 101271 43447050 ~ 43451167 (+)
G1740412 LOC106608825 other downstream 124039 43469818 ~ 43470325 (+)
G1740453 NA other downstream 178957 43524736 ~ 43526726 (+)
G1740752 NA other downstream 867007 44212786 ~ 44213230 (+)

Expression


Co-expression Network