oxa1l (LOC106608836)


Basic Information

Item Value
gene id oxa1l
gene name LOC106608836
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 43346414 ~ 43354437 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036957910.1
ACGCTTTCCGTACAAACTTCTTTTTTTTACTAACAATTCCAACATGGCTGCGATCAGGAGTGGAGTGACTCCGGGTTGTCTAACGAGATGTTTTTTAAGACAAAGTGGAATATCAAGTGCAGGCAACGCTTCATTTACAGAGAGATGGAACCAGAGGTTTCTACAGAGATCCCATCTTCACACAGTAATAGAGTGCAGGAGTCCTACAACTAGAGCTGTTCTCGGTCGACGTCACAATGGGCGGTTATTATTGGTCAGCGCAGTGTCCGTCAGGCACAACAGCTCACAGGTCCCAAGTGAAAGTATTCCTACGGCAACTCCAGTGCTGGAAGCATCCATTGCCAGCCCTGTCGTCGTTGACCCCGCCTCTATTACCACAGAGCCAATCGCCGAGCAGGTGTTAGAGGCTGCACCAACCGCAGTGGATATTCTGCAGGGGGTGGGAGCAGAGCTGAGCCTATCAGAGCTGGGCCTGGGAAGCGCCACTCCTGTTGGCCTGGTCCAGAACCTACTGGAGTTCATGCATGTGGACATTGGGATGCCGTGGTGGGGAGCCATTGTTGTAGgcaCAGTGCTGGCTCGCATCATGGTGTTCCCGGTCATCGTGAAGGGTCAGAGGGAGGCGGCCAAGCTGAACAACGTTATGCCAGAGATGACTAAACTCACCAACAAGATGAACGAGGCCAAACAGAGTGGAAACAAGTTCGACTTTGCTAAGGCGTACTCTGACCTGACCATGTTCCAGAAGAAACATGACGTCAACCCTCTCCGTGGTTTCCTTGTCCCTTTGGTGCAGaCTCCAGTCTTCATCTCCTTCTTCATCGCTCTCAGAAAGATGTCCTACCTCCCCGTCCCCAGTATGCAGACAGGAGGTTGCTTGTGGTTCTTAGACCTCACAGCAGCAGACCCTTTCTACATTCTCCCCATTGCTGTGACCGGGACCATGTTCGCTATACTGGAGCTGGGGGCAGAGTCTGGTGTGGACAACCCTAACCTGAAAGCCATGAAGACAGTGTTCAGAATCATGCCCTTCGTCATCCTCCCTCTCACCATTAACTTCCCCACGGCGGTGTTTACGTACTGGATGACGTCCAACTGCTTCTCCCTGGCCCAGGTGGCCCTGCTCAAACACCCCCTGGTCAGACGGAAGCTGAGGATCCCAGAGAGGATCGAACACCCTACCTCCGCCCTGCCCCAGAACGACGGCTTCTTCGAGACCATCAAGAAGGGCTGGAAGAATGCTCAGCTTGCCCAGcagttggaggagagggagaggaggatcaAGAACCACCTGGATATTGCATCAAAAGGTCCATTGAGACAGACCTTCACTCACAACCCTCTACAGCAGTCGACACCATCCATTGCAGCAGCAGCAACCAAGTCAGCCAAAGCAAAACAAGCATCCCCGGCAACCGGTGGTAAGAAGAGGCCATGGGAGGAGACTATTGGTTGAAGAAGAGTGACAGACCGTTTGAAGGCCCAATGAATTGTGTGTGCATATTTATTGAGCGAGAAGTGTGTGGAGGGATTGGTAGACAGGACATGGGCGGCGCACAGGGTTTGTCATAAATGTagtctaaataaagagcaaaCTTCTGTTGCCTTAAAACGTCTGTGTACATTATGACAACCTGAATTCTGATTTGAAAACGTATAGTTGATTAAATCCATtggaatgaatatatatatatatatatatatatacacacacaattgaCCATTCCCCGTTGTGCTGTTGTTATTTGATAGTTTTCAAGAGCTAAGAAGTTAAAGCAGATATCCAATTTATTGACTTGGATACACATCCTGAATGCTAATCAATAAAAATGTGTTAAATTCGC

Function

NR:

description
mitochondrial inner membrane protein OXA1L-like

GO: NA

KEGG:

id description
K03217 yidC, spoIIIJ, OXA1, ccfA; YidC/Oxa1 family membrane protein insertase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036957910.1 True 1844 mRNA 0.49 10 43346414 43354437

Neighbor

gene id symbol gene type direction distance location
LOC110500504 NA coding upstream 635 43335680 ~ 43345779 (+)
LOC110500503 LOC106608839 coding upstream 22540 43305093 ~ 43323874 (+)
LOC110500501 NA coding upstream 47109 43287190 ~ 43299305 (+)
LOC110500500 LOC106596943 coding upstream 68248 43268610 ~ 43278166 (+)
LOC110500499 ubil coding upstream 78272 43267057 ~ 43268143 (+)
LOC110500510 ccnb1ip1 coding downstream 28444 43382881 ~ 43385078 (+)
LOC118942788 NA coding downstream 43117 43397554 ~ 43404747 (+)
LOC110500847 NA coding downstream 51061 43405498 ~ 43409042 (+)
LOC118942933 NA coding downstream 658416 44012853 ~ 44019901 (+)
LOC110500517 LOC106608821 coding downstream 685515 44039952 ~ 44050765 (+)
G1740340 NA non-coding upstream 12721 43333476 ~ 43333693 (+)
G1740339 NA non-coding upstream 13847 43332130 ~ 43332567 (+)
G1740337 NA non-coding upstream 16072 43330070 ~ 43330342 (+)
G1740336 LOC106565892 non-coding upstream 17249 43328903 ~ 43329165 (+)
G1740335 NA non-coding upstream 17812 43328395 ~ 43328602 (+)
G1740367 LOC106608832 non-coding downstream 30790 43385227 ~ 43386232 (+)
G1740388 NA non-coding downstream 75846 43430283 ~ 43432161 (+)
G1740411 NA non-coding downstream 108416 43462853 ~ 43463081 (+)
G1740408 NA non-coding downstream 110393 43464830 ~ 43466342 (+)
G1740312 r1441 other upstream 18676 43255653 ~ 43327738 (+)
G1739440 vax2 other upstream 844057 42501349 ~ 42502357 (+)
si:dkey-185m8.2 LOC106608874 other upstream 991087 42354556 ~ 42370239 (+)
cxcl8c cxcl8c other upstream 1057914 42285056 ~ 42288500 (+)
G1740366 LOC106608832 other downstream 34752 43389189 ~ 43390299 (+)
G1740398 NA other downstream 92613 43447050 ~ 43451167 (+)
G1740412 LOC106608825 other downstream 115381 43469818 ~ 43470325 (+)
G1740453 NA other downstream 170299 43524736 ~ 43526726 (+)
G1740752 NA other downstream 858349 44212786 ~ 44213230 (+)

Expression


Co-expression Network