LOC118942788


Basic Information

Item Value
gene id LOC118942788
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 43397554 ~ 43404747 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005038440.1
tgcctttagctcccttatctcacctcatttgctcacattgtatatagacttatttttctactgtattattgactatgcttgtttgtttgtgtagGCTATTCCTAGAAGTGAAGATGGAGATAATAGTAACATAATATTCAGTGGGGTGTAATTTGACTATAATTTAGTCTGTTTCTTGGgaggttttctgtcctcagataaagAGGGCTATGAAATCCTGTCTACATATGAAGAGGTCCCAatgaagagcagtggttctcagtcctggtcctggggactcaAAGAGATACCTTGTAACTGGAGATTCTTTAAACGATTGCCTACAGTTAACGTGTAGGGCACTGcaaggttgggtgaccagggcCACCTGGGACTGCCTCCTGGAGGAATTCAGGTGTGTGAAGGCTACCTATGTCCTGCATAACTGTTTCAAGGATGGGGTCCATCAACGCAGCAAGAGAGGCAATCTGTGTGCGGGAGATCTTCACCTCCTACTTTTTCGAAAAGCTGTTCTCtaacaccatagactacactatgcacaaccaaaggctcttttaagagccattcacattgcaataagagtattcttccatttacttagctatgtcaactgcagttattCAGTTCCCAATTTCTCTCCCTTTGATTTCTACTTCTCAGGTGATGGTGCTGTTTAGGTAAGGGTGTGATgtctgtacaaaaacaaaacaggctaTTTTAAATCACCCATATTGAAAAAATGTAGAACAAGTAGACACCCTATAACCCACACCGACACACTCATGTatcaatctgattgatggattgtgttGCGGAGTAATGGGGCTCCTTCCACCTTCATAGAATAGGCAAGacggccaaccatggagaatagtaagacacttCATTATTTCTATAACTACGCTATATTGTTTTTCCTCGTGTGTCCGTtcatgtttttcagcataaagtactctgcggccacttagtgtggtgtggacaccaggttatatcagctgtgtcggtGAACCCCTCCTGCATTGGAACTGGCTATATAGAGGCcacagcatgatcagagatatgttttgatgtgagaggatGCCGACCCGCAGACCTATCATCACCACCTCACCCACTTTTAAGATAGCCTTTGGGCTGACTAGAGACtattatgtaattgtgatgaactgagagaatatttggGTTGCACTgtgattcattaatcatatgctgccTTCCCTGCTCCTatattcttacctctttccctttctgtcttttacacctctctcACCACCTCTTTCTTCATCGGTTTTTATAATGCACAAgagatgtgcattgaagtacagattgaacttgtatttataatgcatgtatttataacacttggataatgaacttctttcaacaatgcgtttcacattctctactggttgaaattaagtctcATTTGATGAAACACTACACCTAACCTGTTTAACAGATGCAGATGAAGGGCATTAGATATTGACATGAACCGGTTTTAGAGTATTTACATGATGCATaggaagtgtagtgtactgttttttaaattctatttctgtatatatgaattacaaatcagccttttaATTAGTTAAA
>TU1993112
attccgacaggacaggacaaggttgcagcaaacacgatgatagtctggttcaggcatgagacacacaaacaagaatccgacaaagacaggagcagaaacagagagagatatagggacctaatcagagggaaaaagggaacaggtgggaaaaggggtgaatgaggtagttaggaggagacaaggaacagctgggggaaagcgggggagaaaaggtaacctaatacgaccagcagagggagacagggtgaaaggaaaggacagaaagacacaacatgacaatacatgacagaggCAACACATAgattcctgttgaacactgtcTCTTTTAACTACTTTATTTtctcaataacagtctctctccttaacttcatctttctctcgtcaccctaaatcctctaggttatatcagctgtgtcggtGAACCCCTCCTGCATTGGAACTGGCTATATAGAGGCcacagcatgatcagagatatgttttgatgtgagaggatGCCGACCCGCAGACCTATCATCACCACCTCACCCACTTTTAAGATAGCCTTTGGGCTGACTAGAGACtattatgtaattgtgatgaactgagagaatatttggGTTGCACTgtgattcattaatcatatgctgccTTCCCTGCTCCTatattcttacctctttccctttctgtcttttacacctctctcACCACCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005038440.1 False 1596 mRNA 0.40 4 43397554 43404747
TU1993112 True 689 lncRNA 0.45 2 43403538 43404426

Neighbor

gene id symbol gene type direction distance location
LOC110500510 ccnb1ip1 coding upstream 12476 43382881 ~ 43385078 (+)
oxa1l LOC106608836 coding upstream 43117 43346414 ~ 43354437 (+)
LOC110500504 NA coding upstream 51775 43335680 ~ 43345779 (+)
LOC110500503 LOC106608839 coding upstream 73680 43305093 ~ 43323874 (+)
LOC110500501 NA coding upstream 98249 43287190 ~ 43299305 (+)
LOC110500847 NA coding downstream 751 43405498 ~ 43409042 (+)
LOC118942933 NA coding downstream 608106 44012853 ~ 44019901 (+)
LOC110500517 LOC106608821 coding downstream 635205 44039952 ~ 44050765 (+)
pop7 pop7 coding downstream 693190 44097937 ~ 44099926 (+)
LOC110500520 LOC106608811 coding downstream 721335 44126082 ~ 44154069 (+)
G1740367 LOC106608832 non-coding upstream 11322 43385227 ~ 43386232 (+)
G1740345 NA non-coding upstream 25725 43344536 ~ 43371829 (+)
G1740340 NA non-coding upstream 63861 43333476 ~ 43333693 (+)
G1740339 NA non-coding upstream 64987 43332130 ~ 43332567 (+)
G1740337 NA non-coding upstream 67212 43330070 ~ 43330342 (+)
G1740388 NA non-coding downstream 25536 43430283 ~ 43432161 (+)
G1740411 NA non-coding downstream 58106 43462853 ~ 43463081 (+)
G1740408 NA non-coding downstream 60083 43464830 ~ 43466342 (+)
G1740415 LOC106608825 non-coding downstream 71116 43475863 ~ 43476299 (+)
G1740416 LOC106608825 non-coding downstream 72282 43477029 ~ 43477252 (+)
G1740366 LOC106608832 other upstream 7255 43389189 ~ 43390299 (+)
G1740312 r1441 other upstream 69816 43255653 ~ 43327738 (+)
LOC110500499 ubil other upstream 129411 43267057 ~ 43268143 (+)
G1739440 vax2 other upstream 895197 42501349 ~ 42502357 (+)
si:dkey-185m8.2 LOC106608874 other upstream 1042227 42354556 ~ 42370239 (+)
G1740398 NA other downstream 42303 43447050 ~ 43451167 (+)
G1740412 LOC106608825 other downstream 65071 43469818 ~ 43470325 (+)
G1740453 NA other downstream 119989 43524736 ~ 43526726 (+)
G1740752 NA other downstream 808039 44212786 ~ 44213230 (+)
LOC110500528 tmem256 other downstream 1041813 44446186 ~ 44451532 (+)

Expression


Co-expression Network