LOC118942933


Basic Information

Item Value
gene id LOC118942933
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 44012853 ~ 44019901 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005038610.1
CCAGTAGATAGGCTCCATGTTGCTCACCGCCGTTCCCAGTAAATCCAGTAAGAATATCAGCACAAATCCCAGTTTACTCCCACTTCTCCGACACGCCATTGCAACTCCACAGCCCCTATGATTTAACCCCATTTAAAAATAAATGGTATATTTTCTATGAGGATGTAGATGGGGTGCTGTCCAAACAAAGGCTATGGCCGTGTAAGCTATAGGTGAGTCACTCAATGCGTGAGGAGGAAATATCGTGCCTTGGGCAACCGCATGGATATAAAACGAATAATAGAGCACACAACGTAGTAATTGACAACTACGGCAGAGAAAGTTGCTCTAGCTGTGTTCAATGGCTTGAGCACCACTCCCCTTCTTCCACAAAACAATAACTCCCGTTGAATCGATTTCTATCCGGATTTGATAGGCGCTCGAGGAGAGCTATTTTCTGTTGCGTGTTGGTGTTTCCTATAATTGTGTTTTCCAAACAATGTTCCCTTGTTCTCTGCGCCGATTCTCTTCGGTTTCTCTCCCATTCCTTTCTACTTCTTATTTTCTTTAGAGTTTTTTACTCCGATAAATAAATTGTAGTTTCAGAAGATTCGAGACATGAGCGCAAATGCTGTGTTTAAAAATAGAAGAGGCTTTTCTCCCGGTTTAGAACAGTAGCTCCACCAGAAGGACGTGTTGATGCTCGCTGGTCGGTGGATTTGTCATTGCACGGTTTGATCCACACTGCGcgtcctttctcttctcttccaaaaatggacacccttcaatggatatcaatcaacaaagagTTATACAGAGGAGGCATACAAAGacttcaccctccctacacctctgatgaatataacaggaaacctgttcgatcaccatgcactgcaaaatcattctggctgTGGACAAGGAGAACATCAGCACATTAACATCAACATGCCAGAGGATGTGTCCattggacttggggctctgctgaGAGTTTACCTTATTTCGATTCTTTTAAACttctgctttgccactaaaatcataataaacacggaga

Function

NR:

description
ephrin-B3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005038610.1 True 1030 mRNA 0.43 4 44012853 44019901

Neighbor

gene id symbol gene type direction distance location
LOC110500847 NA coding upstream 603811 43405498 ~ 43409042 (+)
LOC118942788 NA coding upstream 608106 43397554 ~ 43404747 (+)
LOC110500510 ccnb1ip1 coding upstream 627775 43382881 ~ 43385078 (+)
oxa1l LOC106608836 coding upstream 658416 43346414 ~ 43354437 (+)
LOC110500504 NA coding upstream 667074 43335680 ~ 43345779 (+)
LOC110500517 LOC106608821 coding downstream 20051 44039952 ~ 44050765 (+)
pop7 pop7 coding downstream 78036 44097937 ~ 44099926 (+)
LOC110500520 LOC106608811 coding downstream 106181 44126082 ~ 44154069 (+)
ufsp1 ufsp1 coding downstream 106773 44126674 ~ 44128053 (+)
LOC110500528 tmem256 coding downstream 426285 44446186 ~ 44451532 (+)
G1740649 NA non-coding upstream 95390 43917239 ~ 43917463 (+)
G1740647 NA non-coding upstream 96574 43916008 ~ 43916279 (+)
G1740507 NA non-coding upstream 375139 43637307 ~ 43637714 (+)
G1740457 NA non-coding upstream 477900 43533843 ~ 43534953 (+)
G1740453 NA non-coding upstream 486127 43524736 ~ 43526726 (+)
G1740697 NA non-coding downstream 20463 44040364 ~ 44040631 (+)
G1740698 NA non-coding downstream 21245 44041146 ~ 44041467 (+)
G1740699 NA non-coding downstream 23324 44043225 ~ 44043438 (+)
G1740731 NA non-coding downstream 139929 44159830 ~ 44160067 (+)
G1740412 LOC106608825 other upstream 542528 43469818 ~ 43470325 (+)
G1740398 NA other upstream 561686 43447050 ~ 43451167 (+)
G1740366 LOC106608832 other upstream 622554 43389189 ~ 43390299 (+)
G1740312 r1441 other upstream 685115 43255653 ~ 43327738 (+)
G1740752 NA other downstream 192885 44212786 ~ 44213230 (+)
LOC110500529 LOC106608720 other downstream 441481 44461338 ~ 44480565 (+)
fcer1g LOC106608748 other downstream 1424626 45444361 ~ 45449712 (+)
LOC110500870 LOC106608752 other downstream 1465371 45485247 ~ 45517233 (+)

Expression


Co-expression Network