pop7 (pop7)


Basic Information

Item Value
gene id pop7
gene name pop7
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 44097937 ~ 44099926 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021577921.2
TTGTTTCTAAACAGTACACTGTTTCCGTAATGAATACGCCCCATATACTATTATCGCGGATATTCAATTTAACCATTATATTTCAAATGTAGCTTGGTACGACTGCAAATATACGTTTTTATTTAACCAGTAATCAGAGGGTGGCGCAGCACTGTATTTGATATGTATTTTCATAATATTAACTGATGGAGGAGAACGTTTTCGTATTGATTACTTCCGGGGCACCTCTGTGTTTCCAGAAGTTCACAAACCTCTCAGGTTCTGAGTTCCCCAGCACGATAGAGTCAAAATTTGAATAATTTGGTTGCAAACCGTGATTGAAGTGCTCCATTCCACTACTTCCCTGTTTCTGACTGACTCAATCGTGATGACAGAACCACACAGCCCTATCTCTGCCTCCGTCCCCCAGACAACCCCAGGCATCATCATGCCCCCGGCCGACGGCAGTGGCACAGCGGTGGAGATGGACCCTGTGGAGTACACCCTCCGCAAGCGTCTCCCCAGGAAGCTGCCCAAGCGCCGCAATGACGTGTACGTCAACATGAAGACAGACTTCCGGGCCCAGCTGGCCCGCTGCCAGAAGCTGCTGGAGGGAGGAGGCCACAGGGAGATCTGCGTCCATGGTCTGGGCCTGGCCATCAATAGGGCCATCAACATCGCCCTGCAGCTCCAGGCCAGCAGCCAGGGCGCACTACAGCTGGCGGCCAACACGTCTACAGTGGAGCTGGTGGACGATCTGGAGCCTGAGGACCCGGACGAGGCGGGGGAACCCATGACACGCACTCGGAATAATTCGGCTATTCATATCAAAGTGTTCTACCCAGACCCACAGTGACCCGAAACGCATCACCATCAGTCCTAGCTCGGATATGGCTAGCTACCTCCATTGTCATGGTGTCTGTAATATAGTAATGGAGGCTAGTCATACCTCACTCGTATCTCACCTGGTTAATCCTGCCGGATATCCTAACCCTCTGCGGTGGCTGTTATCCAGATGTGGGAAATAATGAGAAGTGTCTATGAACTGAGCTGATTTCAGAGCTTTTGGAAGCTCTTTCTCAGCTTTGTCATTTTGTTATGCATGTCAGTCAGAGAAGTGTATTTGTTAGTATCAAGATGTGATGTTTCATGCcatcatttccaatccctcaCTGCCTGAAAAAAATAACTCCCATAGGAAATGGGACAGACCACActaaggctgcatttacacaggcagcccaattctgatattttttccactaatgggtcttttgaccaatcaaatcagatcttttcacatgaGCTCTTTTAAGAACTGATCTTAGTGGGGAAAGAATATCAGCGTTGGGCTACCTTTTGTAAATGCAGCCTAACTCATGCGAGCTACAATACTCCTGTTCCACATGGGAATACATGCTCTGAAAAGGATGTGGATTTAAAGCTTACATAAAACCTTGTAGATTTTTTAAAAGTGTAATCACTGAATATTAGTTGACTATGGGAATTAAgtcatatttttttgtaatttgcTGGTCAGATTTAAGTTTACCAACTATATATGCAATTATGCATTTTACCTAACAATGCCAAACATTTGACATACAAATTCTGTCAAGTCAGTAAATGTTAGTTTTTTTTACATCATACAAATGTATGTTTTTAGCTTCAGTATttgaatgtatatacagtatttattgtACATGTGTAATAAAATAAGGAAAGTACA
>XM_036957935.1
TTTTCATAATATTAACTGATGGAGGAGAACGTTTTCGTATTGATTACTTCCGGGGCACCTCTGTGTTTCCAGAAGTTCACAAACCTCTCAGGTTCTGAGTTCCCCAGCACGATAGAGTCAAAATTTGAATAATTTGGTTGCAAACCGTGATTGAAGACAACCCCAGGCATCATCATGCCCCCGGCCGACGGCAGTGGCACAGCGGTGGAGATGGACCCTGTGGAGTACACCCTCCGCAAGCGTCTCCCCAGGAAGCTGCCCAAGCGCCGCAATGACGTGTACGTCAACATGAAGACAGACTTCCGGGCCCAGCTGGCCCGCTGCCAGAAGCTGCTGGAGGGAGGAGGCCACAGGGAGATCTGCGTCCATGGTCTGGGCCTGGCCATCAATAGGGCCATCAACATCGCCCTGCAGCTCCAGGCCAGCAGCCAGGGCGCACTACAGCTGGCGGCCAACACGTCTACAGTGGAGCTGGTGGACGATCTGGAGCCTGAGGACCCGGACGAGGCGGGGGAACCCATGACACGCACTCGGAATAATTCGGCTATTCATATCAAAGTGTTCTACCCAGACCCACAGTGACCCGAAACGCATCACCATCAGTCCTAGCTCGGATATGGCTAGCTACCTCCATTGTCATGGTGTCTGTAATATAGTAATGGAGGCTAGTCATACCTCACTCGTATCTCACCTGGTTAATCCTGCCGGATATCCTAACCCTCTGCGGTGGCTGTTATCCAGATGTGGGAAATAATGAGAAGTGTCTATGAACTGAGCTGATTTCAGAGCTTTTGGAAGCTCTTTCTCAGCTTTGTCATTTTGTTATGCATGTCAGTCAGAGAAGTGTATTTGTTAGTATCAAGATGTGATGTTTCATGCcatcatttccaatccctcaCTGCCTGAAAAAAATAACTCCCATAGGAAATGGGACAGACCACActaaggctgcatttacacaggcagcccaattctgatattttttccactaatgggtcttttgaccaatcaaatcagatcttttcacatgaGCTCTTTTAAGAACTGATCTTAGTGGGGAAAGAATATCAGCGTTGGGCTACCTTTTGTAAATGCAGCCTAACTCATGCGAGCTACAATACTCCTGTTCCACATGGGAATACATGCTCTGAAAAGGATGTGGATTTAAAGCTTACATAAAACCTTGTAGATTTTTTAAAAGTGTAATCACTGAATATTAGTTGACTATGGGAATTAAgtcatatttttttgtaatttgcTGGTCAGATTTAAGTTTACCAACTATATATGCAATTATGCATTTTACCTAACAATGCCAAACATTTGACATACAAATTCTGTCAAGTCAGTAAATGTTAGTTTTTTTTACATCATACAAATGTATGTTTTTAGCTTCAGTATttgaatgtatatacagtatttattgtACATGTGTAATAAAATAAGGAAAGTACA

Function

symbol description
pop7 Predicted to enable nucleic acid binding activity and ribonuclease P activity. Predicted to be involved in RNA phosphodiester bond hydrolysis, endonucleolytic and tRNA processing. Predicted to be located in nucleolus. Predicted to be active in nucleus. Orthologous to human POP7 (POP7 homolog, ribonuclease P/MRP subunit).

NR:

description
ribonuclease P protein subunit p20 isoform X1

GO:

id name namespace
GO:0008033 tRNA processing biological_process
GO:0090502 RNA phosphodiester bond hydrolysis, endonucleolytic biological_process
GO:0005634 nucleus cellular_component
GO:0004526 ribonuclease P activity molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
K14527 RPP20, POP7; ribonuclease P/MRP protein subunit RPP20

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021577921.2 False 1708 mRNA 0.44 2 44097937 44099926
XM_036957935.1 True 1455 mRNA 0.45 2 44098104 44099926

Neighbor

gene id symbol gene type direction distance location
LOC110500517 LOC106608821 coding upstream 48349 44039952 ~ 44050765 (+)
LOC118942933 NA coding upstream 78036 44012853 ~ 44019901 (+)
LOC110500847 NA coding upstream 688895 43405498 ~ 43409042 (+)
LOC118942788 NA coding upstream 693190 43397554 ~ 43404747 (+)
LOC110500510 ccnb1ip1 coding upstream 712859 43382881 ~ 43385078 (+)
LOC110500520 LOC106608811 coding downstream 26156 44126082 ~ 44154069 (+)
ufsp1 ufsp1 coding downstream 26748 44126674 ~ 44128053 (+)
LOC110500528 tmem256 coding downstream 346260 44446186 ~ 44451532 (+)
LOC110500529 LOC106608720 coding downstream 361412 44461338 ~ 44480565 (+)
LOC110500530 NA coding downstream 438018 44537944 ~ 44556711 (+)
G1740699 NA non-coding upstream 54499 44043225 ~ 44043438 (+)
G1740698 NA non-coding upstream 56470 44041146 ~ 44041467 (+)
G1740697 NA non-coding upstream 57306 44040364 ~ 44040631 (+)
G1740649 NA non-coding upstream 180474 43917239 ~ 43917463 (+)
G1740731 NA non-coding downstream 59904 44159830 ~ 44160067 (+)
G1740735 NA non-coding downstream 70905 44170831 ~ 44171265 (+)
G1740736 NA non-coding downstream 73083 44173009 ~ 44173251 (+)
G1740738 LOC106608803 non-coding downstream 75266 44175192 ~ 44181626 (+)
G1740739 LOC106533889 non-coding downstream 90053 44189979 ~ 44190321 (+)
G1740453 NA other upstream 571211 43524736 ~ 43526726 (+)
G1740412 LOC106608825 other upstream 627612 43469818 ~ 43470325 (+)
G1740398 NA other upstream 646770 43447050 ~ 43451167 (+)
G1740366 LOC106608832 other upstream 707638 43389189 ~ 43390299 (+)
LOC110500499 ubil other upstream 829794 43267057 ~ 43268143 (+)
G1740752 NA other downstream 112860 44212786 ~ 44213230 (+)
fcer1g LOC106608748 other downstream 1344601 45444361 ~ 45449712 (+)
LOC110500870 LOC106608752 other downstream 1385346 45485247 ~ 45517233 (+)

Expression


Co-expression Network