LOC110500520 (LOC106608811)


Basic Information

Item Value
gene id LOC110500520
gene name LOC106608811
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 44126082 ~ 44154069 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021577926.2
ATCACGCATCGTAGATGGCAGGATGCACATTTGCGATCGCAAATATACCACAGAAGAATGTGAGGTTGCGAAAACAATGCCTCTCTCTTTTCGAAGAATGATCTATTCACTGTATCCTAATTTTTCATTTGGCACCTTCATTTCATATAATTGTACTTTTAGCCCGTCTATATCCCAATGTATTTCTGATTTTAGAGGACTTCGGATACAAAATTGAGACATATTCTGTTTCAAAGAAAAGCTGACCCAACAACAAAATGTATTGGTAGAGGGAGGAATCTCGAGACGACCgttggaatatatatatatttttttgaggtCATCGTCAGTCATTATCTTCTCCACACGCGCACAAGgcaTACAGACTACTCTGGTGACCCTGCTATGGCTGTGGGGATGGTGGCTGACCCCCGTTCTGCCCTCGTGCACCACGGGCCAGCCAGCAAGGTGCAAGGCTGCCATGTCAGCTCCTGGTACCAACCTGGCGGGCGAGGGTTTCAACATTGTCACCATGGAGCGCAAGCAGgcctatgttgttgatgtggacaactGGAAGACCCCAAATGGAGCCTGTACCCTCTGTGTTAACCCTTTCATGGAGGGCCAGACTCAGAGGCTGCCCGCAGCTGTGGTGGACTGGCGTCCCTTGCATCAGTGTCACATGAAGTTGTCCAGCATTGTCTTCGACTCCAGCGAGTCGTTTGTGAGCAGCAGCCAGACAGATgtGGACGGCAGTTGGCAGATTGGTCTGGACGTTAATATCCCCAACGCTAATGGGTCGGCCATGGTGGGGGGTACCCACTCCAGAGCTGCCAAGACGGTGATGAGCCAGTCCAAGAAGGACAAGTACAGCTTCATCAAACAGGATATACACTGCTCCTATTACAGTTACCGCCTGATAGAGGACCCTCCCCTGCACCCCGAGTTCTCTCGCTCCCTGGGCATCCTGCCCCCCCTCTACACCGACCAGACCAAGGCTGACTACAATCGTTTCCTCGCGACCTTCGGTACCCACTATATCCGGAAGGTTAAACTGGGGGGGCGGGTGAAGGGCGTCACCTCACTGCGCGTGTGCAAGGCGGCCGTCAATGGTTACAACGAGAACGAGGTCAAGGACTGCCTGGAGGCCGAGGCCTCTGTCGCCACCAACTGCGGAACAGCCGAAGCCAATGCAGAGACAAAGTTCTgcaagagtgacctcaaaaaacgGAACACCAGTGACACCTTCAGCAGTACCTTCAACGAGAGgtTTACCGAGGTGGTGGGGggacagacggacggaacgcCAGACCTGCTCTTCTCCAAGATTGGTGAAAACTCCAAGGCCTTTGCTGATTGGGCAAGTAGCCTGAAAACCATACCTGATATCATCAActactctctccatcctctccacctATTGGTGAAAAAGGCCAGCAAGAGGGCGGGGCTGAAGAAGGCCGTGGAGGACTACATCCTGAAACACGCCCTGTTCAAGCACTGCTCTGGGAAGTGCAAGGGAAGCTCCAGGTCCAGTACCCATGActcctgtcagtgtgtgtgccaGACCAGTAAGGAGATGACCAGCCAATGCTGCCCGCAGGAGAAGGGCTTGGCTCACCTTACCGTCACCGTGAAGAAAGCCAGGGACCTCTGGGGAGACACCACCTCCCAGACCGACGGCTTTGTCAAGGTGCTCATGGGAAAAGACGTCAAGCAGACCAGGGTGATCCATAACAACGACAACCCCATGTGGAAGGAGGTCTTCAAATTTGGGACAGTCAAGCTCTCCCTGGCCAGCGAGCTCAAGTTCACTGTATACGATGAAGACAATTGGTCGAACGAACTCCTGGGGGAATGCAAAGTCCAGCCCGTCAAAGCTGGGATTCACGACGATATGTGTCCCATGAGTCACGGCAGCCTGTTCTACTCCTACAAGGTCGACTGCGCCCCAGGGCTTCGGGGCCACACCTGTGGGGAGTACGCCCCTTCCGGGATGAACTCTGACCTCTCTTACCTCTATACCTCCCGCAACGCCCTGAACATGACTCAGGAACTGCTGGCTCACATCCGGATGGGCCAGCCCCTAGGAGACCCGTTGACCTTCTTGGTGAAGCAGAGGGATAATGATCACCCTGCCCTCAGTGAGCCGTGATCAAAATATATGCCCTGTAATGCACTGTAAACCTTAGTCTGCCTATCTAACCTTAATGCATACCATTTCTAATCGcttgttctttaaaaaaatataaatgtaacctttatttaactaggcaagtcagttaagaacaaattcttatttaaaatggcggcctaccggggaacagtgggttgactatcttgttcaggggcagaacgacagatttttaccttgtcagctctgggattcgatccagcaacctttcgttactggcccaacactctaaccactaggctagttTAAAGATAGTGTGTTCAACATGCAtatgacacactgacatacatgccttcgtaaagtattcagacctttccactttttccaaatgttgttacgttacgttattctaaaatgtattaaataaaaacatctcagcaatctacaca
>XM_021577925.2
GCAGTCCACACAGCACAGAGGGAGGTTGACTGCCAAAGCAAGGAAATGGCTCTGTATgcaaagtggctatgcataggaCTGATTTGATTGGATGCGTGGTTGGCTAATCATGGAGAGCAGGAGCACATGGGTGAGAGGACTTCAAAAGTAGTCTAGTGTTAAGTGGAATGAAACTTCTGGGCCTAATCTTGTTTTCTAGTGCCATGAGACATTCATCCATCTGTCTGCGAAGGGTTTCTCGTAAGTAAACATCCActttcacaccaacacacattgCAACAGCTTGTGGTGGTATGCTGTGTATAGCCAAAGAAAACTACAGGCCCCGTCTATATAAACAAAGCCTTGAccgcaacaacaaaaatacatccCACATAGTGATTCcttcagtcagttagtcagtcatcaCACAGTCATCACACAGACATCACACAGACATCACACAGACAGGTCAGGACGCTCCATTGTTCTAGGTGTTGATTTTCATCAACCTCATCATTACCAAGAGATTGTGATTGATATGTCAGgcaTACAGACTACTCTGGTGACCCTGCTATGGCTGTGGGGATGGTGGCTGACCCCCGTTCTGCCCTCGTGCACCACGGGCCAGCCAGCAAGGTGCAAGGCTGCCATGTCAGCTCCTGGTACCAACCTGGCGGGCGAGGGTTTCAACATTGTCACCATGGAGCGCAAGCAGgcctatgttgttgatgtggacaactGGAAGACCCCAAATGGAGCCTGTACCCTCTGTGTTAACCCTTTCATGGAGGGCCAGACTCAGAGGCTGCCCGCAGCTGTGGTGGACTGGCGTCCCTTGCATCAGTGTCACATGAAGTTGTCCAGCATTGTCTTCGACTCCAGCGAGTCGTTTGTGAGCAGCAGCCAGACAGATgtGGACGGCAGTTGGCAGATTGGTCTGGACGTTAATATCCCCAACGCTAATGGGTCGGCCATGGTGGGGGGTACCCACTCCAGAGCTGCCAAGACGGTGATGAGCCAGTCCAAGAAGGACAAGTACAGCTTCATCAAACAGGATATACACTGCTCCTATTACAGTTACCGCCTGATAGAGGACCCTCCCCTGCACCCCGAGTTCTCTCGCTCCCTGGGCATCCTGCCCCCCCTCTACACCGACCAGACCAAGGCTGACTACAATCGTTTCCTCGCGACCTTCGGTACCCACTATATCCGGAAGGTTAAACTGGGGGGGCGGGTGAAGGGCGTCACCTCACTGCGCGTGTGCAAGGCGGCCGTCAATGGTTACAACGAGAACGAGGTCAAGGACTGCCTGGAGGCCGAGGCCTCTGTCGCCACCAACTGCGGAACAGCCGAAGCCAATGCAGAGACAAAGTTCTgcaagagtgacctcaaaaaacgGAACACCAGTGACACCTTCAGCAGTACCTTCAACGAGAGgtTTACCGAGGTGGTGGGGggacagacggacggaacgcCAGACCTGCTCTTCTCCAAGATTGGTGAAAACTCCAAGGCCTTTGCTGATTGGGCAAGTAGCCTGAAAACCATACCTGATATCATCAActactctctccatcctctccacctATTGGTGAAAAAGGCCAGCAAGAGGGCGGGGCTGAAGAAGGCCGTGGAGGACTACATCCTGAAACACGCCCTGTTCAAGCACTGCTCTGGGAAGTGCAAGGGAAGCTCCAGGTCCAGTACCCATGActcctgtcagtgtgtgtgccaGACCAGTAAGGAGATGACCAGCCAATGCTGCCCGCAGGAGAAGGGCTTGGCTCACCTTACCGTCACCGTGAAGAAAGCCAGGGACCTCTGGGGAGACACCACCTCCCAGACCGACGGCTTTGTCAAGGTGCTCATGGGAAAAGACGTCAAGCAGACCAGGGTGATCCATAACAACGACAACCCCATGTGGAAGGAGGTCTTCAAATTTGGGACAGTCAAGCTCTCCCTGGCCAGCGAGCTCAAGTTCACTGTATACGATGAAGACAATTGGTCGAACGAACTCCTGGGGGAATGCAAAGTCCAGCCCGTCAAAGCTGGGATTCACGACGATATGTGTCCCATGAGTCACGGCAGCCTGTTCTACTCCTACAAGGTCGACTGCGCCCCAGGGCTTCGGGGCCACACCTGTGGGGAGTACGCCCCTTCCGGGATGAACTCTGACCTCTCTTACCTCTATACCTCCCGCAACGCCCTGAACATGACTCAGGAACTGCTGGCTCACATCCGGATGGGCCAGCCCCTAGGAGACCCGTTGACCTTCTTGGTGAAGCAGAGGGATAATGATCACCCTGCCCTCAGTGAGCCGTGATCAAAATATATGCCCTGTAATGCACTGTAAACCTTAGTCTGCCTATCTAACCTTAATGCATACCATTTCTAATCGcttgttctttaaaaaaatataaatgtaacctttatttaactaggcaagtcagttaagaacaaattcttatttaaaatggcggcctaccggggaacagtgggttgactatcttgttcaggggcagaacgacagatttttaccttgtcagctctgggattcgatccagcaacctttcgttactggcccaacactctaaccactaggctagttTAAAGATAGTGTGTTCAACATGCAtatgacacactgacatacatgccttcgtaaagtattcagacctttccactttttccaaatgttgttacgttacgttattctaaaatgtattaaataaaaacatctcagcaatctacaca

Function

NR:

description
perforin-1-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021577926.2 False 2562 mRNA 0.51 7 44126082 44154069
XM_021577925.2 True 2733 mRNA 0.51 7 44149056 44154069

Neighbor

gene id symbol gene type direction distance location
pop7 pop7 coding upstream 26156 44097937 ~ 44099926 (+)
LOC110500517 LOC106608821 coding upstream 76494 44039952 ~ 44050765 (+)
LOC118942933 NA coding upstream 106181 44012853 ~ 44019901 (+)
LOC110500847 NA coding upstream 717040 43405498 ~ 43409042 (+)
LOC118942788 NA coding upstream 721335 43397554 ~ 43404747 (+)
LOC110500528 tmem256 coding downstream 292117 44446186 ~ 44451532 (+)
LOC110500529 LOC106608720 coding downstream 307269 44461338 ~ 44480565 (+)
LOC110500530 NA coding downstream 383875 44537944 ~ 44556711 (+)
LOC110500854 LOC106608721 coding downstream 446794 44600863 ~ 44667561 (+)
chrnb1 LOC106608722 coding downstream 525596 44679665 ~ 44703721 (+)
G1740699 NA non-coding upstream 82644 44043225 ~ 44043438 (+)
G1740698 NA non-coding upstream 84615 44041146 ~ 44041467 (+)
G1740697 NA non-coding upstream 85451 44040364 ~ 44040631 (+)
G1740649 NA non-coding upstream 208619 43917239 ~ 43917463 (+)
G1740731 NA non-coding downstream 5761 44159830 ~ 44160067 (+)
G1740735 NA non-coding downstream 16762 44170831 ~ 44171265 (+)
G1740736 NA non-coding downstream 18940 44173009 ~ 44173251 (+)
G1740738 LOC106608803 non-coding downstream 21123 44175192 ~ 44181626 (+)
G1740739 LOC106533889 non-coding downstream 35910 44189979 ~ 44190321 (+)
G1740453 NA other upstream 599356 43524736 ~ 43526726 (+)
G1740412 LOC106608825 other upstream 655757 43469818 ~ 43470325 (+)
G1740398 NA other upstream 674915 43447050 ~ 43451167 (+)
G1740366 LOC106608832 other upstream 735783 43389189 ~ 43390299 (+)
LOC110500499 ubil other upstream 857939 43267057 ~ 43268143 (+)
G1740752 NA other downstream 58717 44212786 ~ 44213230 (+)
fcer1g LOC106608748 other downstream 1290458 45444361 ~ 45449712 (+)
LOC110500870 LOC106608752 other downstream 1331203 45485247 ~ 45517233 (+)

Expression


Co-expression Network