LOC110500530


Basic Information

Item Value
gene id LOC110500530
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 44537944 ~ 44556711 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005038612.1
GCTGCTGGCTCTGTAATGCACTGTGAGCAAAGGacgagaaagaaagagggagagagggagtcacacacacactctgtctcttgcacgcacacacacagaaactgaGAAGTGTCTTGCTTGGGAGATTGAGAGACACATGCacgcactctcactctctcacacatgcacacacacacacacacagggggagtGGTGAACGCAGGCTCCGGTGCGTTTTGAAGCAGCagtgagagtaagagagaggacTAGCCAGTACAGAGGACAGACGACTCTTAAGCTTGAACGGACCGTCACCTACCTACCAGCCCCCAGCCGATGAGCCACAGCCACTGCCACAGCACCgtgaTAAAAGGGGTTATGCCAGGAGAGCTTGAAAGGAAGGGAAGATCCAGCTCTCCGTCCGTccatctgtccgtccgtccgcctCTTCATCCTCAACCCCCTTTTTTTGGGAGCCGGTATCTCAGGTCGGACTGTCCCATTTTGAATTCTTCCTTTTCTCTTGTCATTCTCTTGTTTTGATGGCGGGATGTTAAAGATCAGGTGAAGAAAGGAGGAGCTACATTGTGGACGTCTGCCAGGTCATGTCGTttatacattttttgtttgttgtttattCAACGATCCCTCATTTGTCCTCCTCCTGACTGAattaaagagtgtgtgtgagacgcAGGACTGGAGCCTATGAGGACTTTGAGACTCATCTGTTTTGATATGATCCGGTCGTCAGGCAAATTCTTTCCTATCCTGACGGAGCTGTATCAAAGTTAGCTGGAGctcaagggagaggagggggccgTGGGGAGGGCCTGGGGCCCACAACAGAGCACCCGCATTGGGACACATGCAGAGAGGGACACTGGCATAGTGGTTCTTCTCACCCACTGTTTTCTGTGTACAGGAAAATGACAACAGTAGTTTTCTATTGTTCTGTTGCCATGTTGACGGAGGGACAGTGACATACCAGGGCAACACCTGAACAACAACAACGGTAACAGCAAGGACAGGCAACAGCCATATCTAaaagacaacaacaggtaaaccaCCAGTGACAGCAACAATGCACTGCATCTAACCAAACCTCAATCAGCCAACACCTGATAACTTTGGGTGGGCCTTTGACAAGGaccccacccctccatctctccatccccctctctccctgctgtggTGTCCTTCTCCCTTCATCCTCCAGCGAGAATCCCCTAGTGACCCCACTCTGCTACTATATTTATCCAGATATTGTTGACATTATATTGACATTTATATGTCAATCTAGGCAAGTTTGCTCAAAGGATTCTGGGTAATCACCCCGGGCGGTGCTCCATCGCCCTGGGTGAAAGGGCAGGGGGGCGGCCCACGGTTCCCCCCGACCACAACCGGGTGAAGAGCGGGCGCGGGCAGCAAAATGGCGGCTCTCGCCAGCTCGTTGATCCGCCAGCGGCGGGAAGTGAAGGACCCCCAGGCCAACCGGCAGGTGGCCAACAAGAGGAAGCCGTGCCCCAAGGCCAACAAGTCCCTGTGCCAGAAACAGATATTATTACTCATTTCAAAAGTCCGACTATGTGGCAATCGAGGCCGAAAATTAGAAAAAAGACCGGgactacaagctggcgagaTCTATTTTGAGTGGGGGACTGAAAGTGAATGAATGGTGCCACGGGCCTCACCTACACTGGACCTGAAATGTTTCTCACAACTTTGACAGCTTTGTCATTGAGATCAGGACAACAATATTAAGgacgcTGGTGGACTGTCAGCTCTCAGAACTTAGTGAAGAGGACGACACTGTAGACATGTCACCTGTGCACCAGGCAGTCAATGGAAGGTGTCTCCAAGGTGCCAAGGACAGACAGGGGCTAGAgagactggacaacatgctgctgaGTCTGCAGACAGGGCTGAGGGACAATCATACCCTCACAGCCCAGATAGAAACATAGGAAGGAGGATATGACGTGGTTTGTTTGTGTTGCGCCAGGATGCAAGGGCAAGCAGTAATGCATTGTGGAGGACCTACATTGTTTTAGGTTGTGGTACTCCATTGAGTGTGACTCATTGCAGACATAGGGACTAGTAAAGGGACACCTAGTCCTCACCCAGTAGCTTAGATTGTCACTAGTCATTTTGACTCCCTTGCATGCTTTTAATTTGTTCCCATTCTGACTCTTCATGTATTAGGCTATAAGCATAGTGGAATGCATTTGGCTATTGGCATTGTGtattaggctataggcctagtgtGTACAGAAAAAATAGATGTTTTAAAGCCAAATATTCTTATTATATGCCTTATTCTTATCATATTTTGTCATTCAAATTTTCTATGTAACTTGCACTTTGTTTTCAGGTTTGAGTGAGACGATGTATTCCCTGCAATAAAGTACTTTCAATAAAGTTCTTGAtttattaatatta
>XR_005038613.1
tggaaagaCTTTAGGAAGTAAAGCTATAAGCACACACGTGTATTCCATCCACTAATACTAAACATGAGcatttgacatagaaacatcTCTATTTTTAGGATGTTGATATTGTATGTTTATTAGAGGTATGGGTAGCGCCATCTTAAATTGCCACTGACGACTGGCGGGAGAGAGCGAATAGTGAGCAATAGTAATGGGGTCTTTTTGTAGGAACTAACTCCGCCATGgactacaagctggcgagaTCTATTTTGAGTGGGGGACTGAAAGTGAATGAATGGTGCCACGGGCCTCACCTACACTGGACCTGAAATGTTTCTCACAACTTTGACAGCTTTGTCATTGAGATCAGGACAACAATATTAAGgacgcTGGTGGACTGTCAGCTCTCAGAACTTAGTGAAGAGGACGACACTGTAGACATGTCACCTGTGCACCAGGCAGTCAATGGAAGGTGTCTCCAAGGTGCCAAGGACAGACAGGGGCTAGAgagactggacaacatgctgctgaGTCTGCAGACAGGGCTGAGGGACAATCATACCCTCACAGCCCAGATAGAAACATAGGAAGGAGGATATGACGTGGTTTGTTTGTGTTGCGCCAGGATGCAAGGGCAAGCAGTAATGCATTGTGGAGGACCTACATTGTTTTAGGTTGTGGTACTCCATTGAGTGTGACTCATTGCAGACATAGGGACTAGTAAAGGGACACCTAGTCCTCACCCAGTAGCTTAGATTGTCACTAGTCATTTTGACTCCCTTGCATGCTTTTAATTTGTTCCCATTCTGACTCTTCATGTATTAGGCTATAAGCATAGTGGAATGCATTTGGCTATTGGCATTGTGtattaggctataggcctagtgtGTACAGAAAAAATAGATGTTTTAAAGCCAAATATTCTTATTATATGCCTTATTCTTATCATATTTTGTCATTCAAATTTTCTATGTAACTTGCACTTTGTTTTCAGGTTTGAGTGAGACGATGTATTCCCTGCAATAAAGTACTTTCAATAAAGTTCTTGAtttat

Function

NR:

description
PREDICTED: uncharacterized protein LOC106611146

GO:

id name namespace
GO:0008083 growth factor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005038612.1 False 2421 mRNA 0.49 4 44537944 44556711
XR_005038613.1 True 1036 mRNA 0.42 3 44554195 44556703

Neighbor

gene id symbol gene type direction distance location
LOC110500529 LOC106608720 coding upstream 57379 44461338 ~ 44480565 (+)
LOC110500528 tmem256 coding upstream 86412 44446186 ~ 44451532 (+)
LOC110500520 LOC106608811 coding upstream 383875 44126082 ~ 44154069 (+)
ufsp1 ufsp1 coding upstream 409891 44126674 ~ 44128053 (+)
pop7 pop7 coding upstream 438018 44097937 ~ 44099926 (+)
LOC110500854 LOC106608721 coding downstream 44152 44600863 ~ 44667561 (+)
chrnb1 LOC106608722 coding downstream 122954 44679665 ~ 44703721 (+)
LOC110500532 LOC106608724 coding downstream 170489 44727200 ~ 44746630 (+)
LOC110500535 LOC106608728 coding downstream 225508 44782219 ~ 44788930 (+)
LOC118942934 NA coding downstream 233888 44789670 ~ 44796290 (+)
G1741670 NA non-coding upstream 49186 44488530 ~ 44488758 (+)
G1741666 NA non-coding upstream 62315 44475403 ~ 44475629 (+)
G1741653 NA non-coding upstream 79051 44458606 ~ 44458893 (+)
G1741587 NA non-coding upstream 132516 44405226 ~ 44405428 (+)
G1741712 NA non-coding downstream 117296 44674007 ~ 44675297 (+)
G1741965 NA non-coding downstream 162828 44719539 ~ 44719756 (+)
G1741989 NA non-coding downstream 202768 44759479 ~ 44759698 (+)
G1741992 NA non-coding downstream 206626 44763337 ~ 44763631 (+)
G1741994 NA non-coding downstream 208977 44765688 ~ 44765905 (+)
G1740752 NA other upstream 324714 44212786 ~ 44213230 (+)
G1740453 NA other upstream 1011218 43524736 ~ 43526726 (+)
G1740412 LOC106608825 other upstream 1067619 43469818 ~ 43470325 (+)
fcer1g LOC106608748 other downstream 887816 45444361 ~ 45449712 (+)
LOC110500870 LOC106608752 other downstream 928561 45485247 ~ 45517233 (+)
si:dkey-38p12.3 LOC106608755 other downstream 992406 45544516 ~ 45565742 (+)
G1743043 NA other downstream 1082585 45639296 ~ 45639742 (+)
G1743077 NA other downstream 1150431 45707142 ~ 45709950 (+)

Expression


Co-expression Network