chrnb1 (LOC106608722)


Basic Information

Item Value
gene id chrnb1
gene name LOC106608722
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 44679665 ~ 44703721 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036957941.1
acttgaatgaggtgtgtccaaacgtttgactggtactttatatgAGAATCTGAATCAAATCCGCGCGTCTCCAGTGCAAGTCGTCTACGGACTCTCCCGGTGGACACAGTGCCCCTGCTCACGTGGAGGTGCGTCGGAGGGGGAGAAGCAGCTGATGAAAGCCCTGTTCAACAACTACAACCTGAAGGTTCGCCCTACGGCCTCACCTGGCGCCAAGGTGGTGGTCCGGATTGGCATGATCCTCTCCTCCTTCGTCAGCCTGAACATGAAAGCAGAAGAGATGAGCACAATTGTTATCATGAACCTGGAGTGGACAGACCACCGTCTCTCCTGGAAACCTAAAGACAATGACGGGATCGAGGTGATGCGACTTCCTGCTGGGAAAGTCTGGCTGCCTGACATCGTTCTCATCAACAAtaatGATGGTGTGTTTGATGTGGCCCTCCATGTCGCTGTCCAGGCCTATAGTAGTGGGAGGGTGACCTGGTCTCCCCCTGCCCTCTTCTGTAGTTCCTGTGGGGTCAAgGTGACGTACTTCCCATTTGACTGGCAGAACTGCACCATGGTGTTCAAGTCTTACACCTACGACTCATCAGAGGTGGACCTGCAGCACGCTCTGGATGACCAGGGCAACGAGATCAAAGAGATCCAATACGACGGGGGCTTCAGTGAGAGTGGTGAATGGTACATCCGCCACCAGCCCAGCAGGAAGAATGAGATCCGTGAGGACCTGTATGAAGACATCACCTTCTACCTGATCATCGAGAGGAAGCCTCTCTACTATGTCTTCAACATCATCATCCCCTGTATCCTCCTCACCTGCATAGCCATCTTCAACTTCTACCTGCCGCCGGACGCTGgTGAGAAGATGGGTCTGTCCATCAACGTTCTGCTCACCCTGACTGTGTTCCTGCTGCTGCTGGCTGACAAGGTCCCCGAGACCTCCCTGGGTGTCCCCATCATTGTCAACTACCTCATGTTCACCATGATCCTGGTCACCGTCTCAGTCATCCTCAGTGTGGTGGTCCTCAACCTGCACCACCGGTCCCCCTCCACACACCACATGCCCATGTGGGTCCGCAAGaTCTTCATCCACATGCTGCCCCCCTACCTGGGCATGCTGCGGCCCAAGGTGGAGATGCCCCTCTCCCTGGACCAGCCCCCCAGGAGGGAGAAGAACAATATGGCTATCAGCCGCGCTGCTGACGAGTATTTCATACGCAAGCCCAACACCTGCTTCCTCTTCCCCAAACCCAATAGGTACCAGTCTGAGGGCATGTGTACTGACCTGAGGAAGTTCATTGACGGACCCAGCCACTACCTCACTCTGCCTCCGGAGCTCAAGACTGCCATCGAGGCCATCATCTACATCGCTGAGCAGCTACAGGCTGAGAAGGACTTTGCTGCTctGAAGGAGGACTGGCAGTATGTGGCCATGGTAGTGGATCGCATGTTCCTGTGGATCTTTGTGGTCTTCACTACTGTGGGAACCCTGGGCATCTTCGCCGACGCCAGCTTCAACCACACCCCCAGCGACCCCTTTAAGTACCCCTAACGTGGGACACACACTCCACgtatgcatgaacacacacacacacaagatcccGAACTTTACCTCACTGAAACCCCAGAAGCCATGACAGTTGCCCCAGCCTCCAAAACAGACATTCATAGCGAGATCCTCTACATGCCTTGGACATAGCTACTCTATACTGTACATGGAAGGGTTTCTTTTTCTATATCTGCTGTGCTGAAGTGTGACATTGCTGTAGTTCTGGGGCAGTAGGaatcaagcatctcagagtaggagtgctgatctaggatcagcccaCAGTCGATGGAATCTTATGTTCTAAAaggataaactgatcctagatcagcacttctattGTGAGATGCTTTCTGAATAGGGGCCCTGGttttacaaaaatatatttattgatTGCTATATGTTTGTTGGGAGGATAAAGACAGTGAAAACCAGATACTATAAAATACCAAGTGTATACATTTAATTTACCAGAGTGAGAATGTGTGTTTGGCATATATACTATATGTACCTCTGGTCATCTGTTGTGTATTTTAGTGTGTGTGAAGTTTATTCTTGTATTCAGGAGTAGAATAGCACATAcacatgtatatgtgtatatatgtatgtacagtggggcaaaaaagtatttagtcagcc
>XM_021577937.2
ACGTGGAGGTAATTTGAGCAGACAGCAGTTAACTCGAGCTGCCTGACTGACAGACAGCAACACTCTGGATTTACAAGGAGACCGAGGAACTACACCGCACAAACTGTATAATAACTGATATTTGTCGTGTAAAAGAGTATAAATACTCACTGTTTTGAAGGCCTGTCGGTTTGTGGGTCGACATGAGGGCCCTGGACTTGCTCCTGCTGTTATGTTGCTTGTCTGGCCTATACGCGGTGGGAGGTGCGTCGGAGGGGGAGAAGCAGCTGATGAAAGCCCTGTTCAACAACTACAACCTGAAGGTTCGCCCTACGGCCTCACCTGGCGCCAAGGTGGTGGTCCGGATTGGCATGATCCTCTCCTCCTTCGTCAGCCTGAACATGAAAGCAGAAGAGATGAGCACAATTGTTATCATGAACCTGGAGTGGACAGACCACCGTCTCTCCTGGAAACCTAAAGACAATGACGGGATCGAGGTGATGCGACTTCCTGCTGGGAAAGTCTGGCTGCCTGACATCGTTCTCATCAACAAtaatGATGGTGTGTTTGATGTGGCCCTCCATGTCGCTGTCCAGGCCTATAGTAGTGGGAGGGTGACCTGGTCTCCCCCTGCCCTCTTCTGTAGTTCCTGTGGGGTCAAgGTGACGTACTTCCCATTTGACTGGCAGAACTGCACCATGGTGTTCAAGTCTTACACCTACGACTCATCAGAGGTGGACCTGCAGCACGCTCTGGATGACCAGGGCAACGAGATCAAAGAGATCCAATACGACGGGGGCTTCAGTGAGAGTGGTGAATGGTACATCCGCCACCAGCCCAGCAGGAAGAATGAGATCCGTGAGGACCTGTATGAAGACATCACCTTCTACCTGATCATCGAGAGGAAGCCTCTCTACTATGTCTTCAACATCATCATCCCCTGTATCCTCCTCACCTGCATAGCCATCTTCAACTTCTACCTGCCGCCGGACGCTGgTGAGAAGATGGGTCTGTCCATCAACGTTCTGCTCACCCTGACTGTGTTCCTGCTGCTGCTGGCTGACAAGGTCCCCGAGACCTCCCTGGGTGTCCCCATCATTGTCAACTACCTCATGTTCACCATGATCCTGGTCACCGTCTCAGTCATCCTCAGTGTGGTGGTCCTCAACCTGCACCACCGGTCCCCCTCCACACACCACATGCCCATGTGGGTCCGCAAGaTCTTCATCCACATGCTGCCCCCCTACCTGGGCATGCTGCGGCCCAAGGTGGAGATGCCCCTCTCCCTGGACCAGCCCCCCAGGAGGGAGAAGAACAATATGGCTATCAGCCGCGCTGCTGACGAGTATTTCATACGCAAGCCCAACACCTGCTTCCTCTTCCCCAAACCCAATAGGTACCAGTCTGAGGGCATGTGTACTGACCTGAGGAAGTTCATTGACGGACCCAGCCACTACCTCACTCTGCCTCCGGAGCTCAAGACTGCCATCGAGGCCATCATCTACATCGCTGAGCAGCTACAGGCTGAGAAGGACTTTGCTGCTctGAAGGAGGACTGGCAGTATGTGGCCATGGTAGTGGATCGCATGTTCCTGTGGATCTTTGTGGTCTTCACTACTGTGGGAACCCTGGGCATCTTCGCCGACGCCAGCTTCAACCACACCCCCAGCGACCCCTTTAAGTACCCCTAACGTGGGACACACACTCCACgtatgcatgaacacacacacacacaagatcccGAACTTTACCTCACTGAAACCCCAGAAGCCATGACAGTTGCCCCAGCCTCCAAAACAGACATTCATAGCGAGATCCTCTACATGCCTTGGACATAGCTACTCTATACTGTACATGGAAGGGTTTCTTTTTCTATATCTGCTGTGCTGAAGTGTGACATTGCTGTAGTTCTGGGGCAGTAGGaatcaagcatctcagagtaggagtgctgatctaggatcagcccaCAGTCGATGGAATCTTATGTTCTAAAaggataaactgatcctagatcagcacttctattGTGAGATGCTTTCTGAATAGGGGCCCTGGttttacaaaaatatatttattgatTGCTATATGTTTGTTGGGAGGATAAAGACAGTGAAAACCAGATACTATAAAATACCAAGTGTATACATTTAATTTACCAGAGTGAGAATGTGTGTTTGGCATATATACTATATGTACCTCTGGTCATCTGTTGTGTATTTTAGTGTGTGTGAAGTTTATTCTTGTATTCAGGAGTAGAATAGCACATAcacatgtatatgtgtatatatgtatgtacagtggggcaaaaaagtatttagtcagc

Function

NR:

description
acetylcholine receptor subunit beta-like

GO: NA

KEGG:

id description
K04812 CHRNB1; nicotinic acetylcholine receptor beta-1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036957941.1 False 2188 mRNA 0.51 11 44679665 44703721
XM_021577937.2 True 2302 mRNA 0.50 11 44679785 44703720

Neighbor

gene id symbol gene type direction distance location
LOC110500854 LOC106608721 coding upstream 12104 44600863 ~ 44667561 (+)
LOC110500530 NA coding upstream 122954 44537944 ~ 44556711 (+)
LOC110500529 LOC106608720 coding upstream 199100 44461338 ~ 44480565 (+)
LOC110500528 tmem256 coding upstream 228133 44446186 ~ 44451532 (+)
LOC110500520 LOC106608811 coding upstream 525596 44126082 ~ 44154069 (+)
LOC110500532 LOC106608724 coding downstream 23479 44727200 ~ 44746630 (+)
LOC110500535 LOC106608728 coding downstream 78498 44782219 ~ 44788930 (+)
LOC118942934 NA coding downstream 86878 44789670 ~ 44796290 (+)
LOC110500538 LOC106608727 coding downstream 101077 44804798 ~ 44807754 (+)
ponzr6 LOC106608790 coding downstream 157490 44861211 ~ 44862751 (+)
G1741712 NA non-coding upstream 4368 44674007 ~ 44675297 (+)
G1741670 NA non-coding upstream 190907 44488530 ~ 44488758 (+)
G1741666 NA non-coding upstream 204036 44475403 ~ 44475629 (+)
G1741653 NA non-coding upstream 220772 44458606 ~ 44458893 (+)
G1741965 NA non-coding downstream 15818 44719539 ~ 44719756 (+)
G1741989 NA non-coding downstream 55758 44759479 ~ 44759698 (+)
G1741992 NA non-coding downstream 59616 44763337 ~ 44763631 (+)
G1741994 NA non-coding downstream 61967 44765688 ~ 44765905 (+)
G1740752 NA other upstream 466435 44212786 ~ 44213230 (+)
G1740453 NA other upstream 1152939 43524736 ~ 43526726 (+)
G1740412 LOC106608825 other upstream 1209340 43469818 ~ 43470325 (+)
fcer1g LOC106608748 other downstream 740806 45444361 ~ 45449712 (+)
LOC110500870 LOC106608752 other downstream 781551 45485247 ~ 45517233 (+)
si:dkey-38p12.3 LOC106608755 other downstream 845396 45544516 ~ 45565742 (+)
G1743043 NA other downstream 935575 45639296 ~ 45639742 (+)
G1743077 NA other downstream 1003421 45707142 ~ 45709950 (+)

Expression


Co-expression Network