LOC110500532 (LOC106608724)


Basic Information

Item Value
gene id LOC110500532
gene name LOC106608724
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 44727200 ~ 44746630 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021577938.2
AACTGTACCGTGGTTTTTACAGTACCGACTACCGAACCGCTAGAGCTTGAGGAACAACTTCCTCGGAATGCAGGAGTAGCCAAATCAATGGGCGTGACATAACGGTAACTGCCACCGGAGGAGGGGATGCGAGAAGAGACCTACGCATCACCGGGCACCGGACACCTCTCGCGCGCACACCATCCAGAATTTAAATATTCCGCCCGCACTCTCACTACTATAGTATTCAAGGCGCGACTCGAACTATAACAGAAAACAGGTGGAAAGGAGATAGACAAGCAAAACCTTTTCACAACTCAGAGATTGTGTTTACTGATTCCGCTATTCTGCCGCGTAAAAGGAACATAGGTAGATATACCTAATTGGAAGTATAACGACAGCAGGTGTAGTGAGAAAGGGTGGGCAGCAAGATAACCGTAGCCTTTAGACACACGCACCCAAAGGATTCTTCGTTTTTTCGCCAACAGAAACGTATTTATTTAGGAATCAAAAGAATCCACAAAATCTTATTTTTTTTCAAGATGGCAAACTCGGGAATTCAACTTTTAGGATTCGCCCTGTCACTCGTCGGTGTTATTGCACTGATCGTGGGGACCATTCTGCCACAGTGGAAGATGTCTGCGTACATAGGAGACAACATCATAACGGCGGTTGCCATGTACCAAGGATTATGGATGTCATGCGCTTTTCAGAGCACAGGGCAGCTCCAATGTAAAATATACGACTCGATCCTGCAGCTCGACAgtGCTCTCCAGGCCACCCGTGCCCTGATGATCGTTGGCATCATCGTATCCATCGCTGGGCTGGGCGTGGCCACTATGGGCATGAAGTGTACCACCTGCGGAGGGAACAACAAAGTGCGCAAGTCTCGGACCGCCATGACTGGAGGCATCATCCTACTGattggagCTCTGTGTGCAGTAGTGGCCTGTTCGTGGTTCGCTCACAATGTCATCCGGGCCTTCTATAACCCTTATACTCCTGTCAACACCAAGTTTGAGTTTGGAGCAGCCATCTTCATTGCCTGGGGAGGTTCTTTCCTGGATGTGCTGGGGGGAGCCATGCTGGCATCTTCCTGCCCCAGGAGTAAAAAGCCGGTGCCCAAATACCCCGCCATGAGTGGCGTGAGCGCCCGCTCCCCCCCCAGCAGCACCAAGGAGTATGTGTGAGTGCCCTCTACTGCCGATAACCGGAATAACAGAAGCTTGAATATGAAAGAGTTTGTACATGGAGTCGAACTTTACTAGTCTGTTGTACTTATGGGGTGAATTTTTTTGTGGCGCAAAAGAGCACAGATATGTATAAGAAATACCGTAAACTTCCATTATATTCTGGCACCGTGATTTCATCTGAAATGTGTATTAAGGATGCGGTTATTTAACTAGAGTTTAGTAAACTGAGCAATGCATAAAGAGTAACGCATGAGTTTCAAATTAAACCAGCTGCCAGATTATAATGAGATTTACTGTAAAAGAAATTTGCACAGATCTGTGCTCTTTTGGACAGTGTAAATGTTGCCCATGAAGTTTGCATTTGGGGAGCATATAGAGATAGTATGACAGGAtgacaaaaaaagaaagaatTACTGGATGTGAATATAGTTTTACAGAGGAGACCGCACGACCCCCACCCCAACAAGACTCTATCATGCAGTAGTTTGTTTTTGAGTGacgtctctcaccccctcccaaCATTCCACAATTGTTTATGAGTGGACCTCACAAATACACTGTAATTGGTTATTGGAAGCGCCTTATATTAACAGACCATGTCTTAGGGTGTATGTTCtcgtattacacacacacacacacacacacacacacacacacacacacacacttacttctcATATTACAGCCAAGATGCAGCATCATGGCAAACACTCTCACCCCCCTGTAAGAAACACTGTGCATTTAATTTAGCATTTCCATTGTAATTGAAGGTAATAAATTAAACTCGGTGTGGTGCTAAGGGCATACTTTTGGCACACTCAGGGGATAGCTATGTATGTATAATAGCAAAAGGGACTAGCGCGCCACCAGTTCTTTTACAATGGAGTTTTCTGTCGACGTGACTGTCACCAAGGACGTTCACCGTTCAAGCCAAGTGTTGACGTCACACTAGTTGTGAGTGACTGCATACACTATGGTGAATCCCCAAGCAATTCACCACTGCACTCCAAAAGGGAGAGGGCTTTTCATACAGGCCTGCAATATACTCTATCCCATTATAAAATATCTTTCACCACAGTCAGGTGCCTTGACTCTTACTAAggagtgttttttattttattactgAAATACACGATATATATTATTATCATCAAACAGGTTTTTATTTATGTGTTTGACCATTTGTTAATTACTCTGTATGAAGTCTTGCTCTGTTCTAATGTCCATACTAGTATTCTACTTAGGGtggagcaatatgtttggaatgCATTCTATATAGTATGCTAATGTTGAGCTCTGATTGTAGCCTCGGTTTGTGTTTTAAATGTAGCAGAATATGGTAGTACCATTCCCAAGTGCTAGTGTAGCCTTGTGTCTCCAGTACAGTCTTGTGTTTTTGCTTTTAGCTTTAGACAGCATAAATAATATTTTATGTTTGATATTTGTGATCACTGAGAAAGCTCAACCATCCTGCCTTTGACTGAGAAGATGCTGAGCGGAATTTTAACCGTGGGTGCTTTTGTATTAGGTGATGTTGTAAGCATAGAAATACAATTATTAGATAGCAATAGTAACCAGATTACTAAATAGAAATGATGTTTCTATGGTTGTAAGATGTCCAAAATGTTTCTAGAAATGTTTATTTTAATAAATGGCCATGTAGCTTACTACATAATACATGTTCTTCTACAATTTGTATATGTCGCCCATTTTTCTTTTATTGACAGGTTATCCAATGGTTCTTGTTTTCTCGTAACAACAGTTAAAATGCAATGTTATACCTATCAATATCCCAATATGGAACATCTCTGATAATAAAATACACGACAGGAATATTA

Function

NR:

description
PREDICTED: claudin-7-A

GO:

id name namespace
GO:0005886 plasma membrane cellular_component
GO:0005923 bicellular tight junction cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005198 structural molecule activity molecular_function

KEGG:

id description
K06087 CLDN; claudin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021577938.2 True 3010 mRNA 0.43 4 44727200 44746630

Neighbor

gene id symbol gene type direction distance location
chrnb1 LOC106608722 coding upstream 23479 44679665 ~ 44703721 (+)
LOC110500854 LOC106608721 coding upstream 59639 44600863 ~ 44667561 (+)
LOC110500530 NA coding upstream 170489 44537944 ~ 44556711 (+)
LOC110500529 LOC106608720 coding upstream 246635 44461338 ~ 44480565 (+)
LOC110500528 tmem256 coding upstream 275668 44446186 ~ 44451532 (+)
LOC110500535 LOC106608728 coding downstream 35589 44782219 ~ 44788930 (+)
LOC118942934 NA coding downstream 43969 44789670 ~ 44796290 (+)
LOC110500538 LOC106608727 coding downstream 58168 44804798 ~ 44807754 (+)
ponzr6 LOC106608790 coding downstream 114581 44861211 ~ 44862751 (+)
LOC110500539 LOC106608730 coding downstream 116565 44863195 ~ 44868678 (+)
G1741965 NA non-coding upstream 7444 44719539 ~ 44719756 (+)
G1741712 NA non-coding upstream 51903 44674007 ~ 44675297 (+)
G1741670 NA non-coding upstream 238442 44488530 ~ 44488758 (+)
G1741666 NA non-coding upstream 251571 44475403 ~ 44475629 (+)
G1741989 NA non-coding downstream 12849 44759479 ~ 44759698 (+)
G1741992 NA non-coding downstream 16707 44763337 ~ 44763631 (+)
G1741994 NA non-coding downstream 19058 44765688 ~ 44765905 (+)
G1742012 NA non-coding downstream 53921 44800551 ~ 44800959 (+)
G1740752 NA other upstream 513970 44212786 ~ 44213230 (+)
G1740453 NA other upstream 1200474 43524736 ~ 43526726 (+)
G1740412 LOC106608825 other upstream 1256875 43469818 ~ 43470325 (+)
fcer1g LOC106608748 other downstream 697897 45444361 ~ 45449712 (+)
LOC110500870 LOC106608752 other downstream 738642 45485247 ~ 45517233 (+)
si:dkey-38p12.3 LOC106608755 other downstream 802487 45544516 ~ 45565742 (+)
G1743043 NA other downstream 892666 45639296 ~ 45639742 (+)
G1743077 NA other downstream 960512 45707142 ~ 45709950 (+)

Expression


Co-expression Network