LOC110500538 (LOC106608727)


Basic Information

Item Value
gene id LOC110500538
gene name LOC106608727
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 44804798 ~ 44807754 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021577945.2
aggaATGCATTGTTTTAGAGAAGACAAAAGGGAAATATGTCATGTTATAGAATCTAACCAAAAAATCGCAGTTGTTTCTCCAATCAACAATAAACTCACAGATTGTTAGAAGAAGAGAATCCATAACTGTTCATCAAATTACTGATTTCAGTTACACCTTTATTATGTAAGGACAAAGGGAGCCTGAGAACTACTCAATGACACATCACCCAAATGACCACCCTTGGCCCCCATAGACCTAATTTCTtaatttcctttcctttcctacaCTCATAAcaaccctctccttctcactcacTTTCTCCTCCTCTAATGGTCAGAGAacgagggaagagggaggaagagggaggagaggagtgagtgtTTTTGTTCAGGAGGAGAAAGGCGTTCTCCTGTGTTCTCAGGATGTGGCTGTTAAAGCCTGGAGAAGTGGGCTTCCTGTCTAGGGAAACGATCAGAGAACAGACAAGGCCCTGAGGTTAAGACGCTGTGTTCCCTCAGAGGACGCAGACACTTTGTGCTGCACAGATCACCAACAGATTGAGCAAAGAAGGGGTTCTGTGGAACGGTATGGGAGAGGTTTTCCACAAGGACTAGAGACACCCAATCAATAGATCCTAAGCAGAGCAATATATTGGTGCTGGACACCTGACTCTGGGAGCTAATAGAAACAATATGGACAGATCACAAGCATATGCATTTATGGATGACTTCGATTGGAGACAACTTCCTCGGTCAAACACATCTATTTTCACCTTTTCTACCATTCTACCATTGCATTTGTGAATGAATTTAATGGATATAAAATGCAGAGACTCTCACACCACCGTCTCTCTCTGGGAATATAGATCTGTATCAGAGGGTGATATAAGCACCTGTGTACTGTAGTACCTGGTTTCTTGTAAAAGGACTTTGAGGGTTCCGGCCCTCACCCAGAGACTGTCAGAGACCATGTCCAACAACAGTGACAGCTGCAACCTCCCCCTGAACACTGACACACTTGGTCTCACCTACATCTACAGCCTGGCCTTCTCACTGGGTCTCCCTTGCAACCTGCTGTCCCTCTGGGGACTGTACCAACTGGGTCGCTCCGGTGGGGGTGGCTGCCAGCTGGTCTACATTCTCAACCTGCTGCTTTCTGACCTCCTCCAGCTGCTCACCCTCCCCCTATGGATCCTGTACCTCCAGGGGGCTCACCGCTGGCCCTACGGCCGCCCCGCCTGCGAGTTTGTGGGCTATGTCTTCTACGTCAATGTCTACGCTAGCGTGGTGTTCCTCTGTTTGATAGCGTTGGACCGTTGCCTGGCTATAGTACACCCGTTGAGTAGTCGTGGCGTGCGGACGGTGCGGGTGGCGGCAGTGTCTGGAGTGGCGGTCTGGACGCTGACCTTCCTGTTCTGTTTAGGCGGGTTGCTTCCATCGGTGTTCGACGCAGAGAGGCTGCTGTGTCTGGAGCAGTACCCCGTCAGCCTCAGATATGCCCACTTTAAGATTGCTACAGTCATCATGGGGTTCCTTCTGCCCTGTGGTATACTGGGTTACACCTCCGTCCGCATTGGGGTGACCCTCCAACAGTCGCCCTCCGTCTCCAATCAGGACCGCCACAAAATCACTGGCATCCTTGTCGTCATCACCGTCATCTTCATTGTCGTCTTCGGACCCTACCATCTGGTTGGGGGGTACCGttttgtctccctcctcctcatagACAACCCCTGCGAGTTGGAACGGTCCATTTTCCTGTGCTACCGGCTGTGCTACGGTCTGACCAGCCTCAACACTCTGCTGGACCCTCTGTTCTACATCTTCCTGTGTCACAACGCCCGTCTGGAGCTCCGCAGGTCCCTAACGCCCTGTCTGGGACGGGGGCACACAGCCCCCAAACAGGTCAGACTCAGTCTCAGAGGGAATCCTGATCCTAGTGACAATGTGTAAAAACACTGGATTGGACAAACTGTTTTTGAATGAAGAAAACCTGGATAATCTGTATTGTGTTTCCTGTTTTTTGATGAGTTTGAATTCAGCAGGAGGACACATTGTGTAGCGAGACTGGACATACAGACAGTATATTACAGTGTTTTCTTGGACTTGCTCAAGGAACTGACTCCACTGGTTTGACTGCTGAGCATTAGTGATGGAAAAAAGCAGCAATTGTGCCACCCAGTGGGGAGAGCATGCATGTTGCTAGCTGAAATTGGAAATAGCGTTCCATCTACTTCACTTTTCTGCTGTGCCCGTCCTCTCTACCTGTTGATGCACTGCCATAGCCGCCTCAGTTACTACTGTCTAATGAATGCACTataataataatctcataatgtcTTGACTGTTTGCTTGTCATGATTTTTATACTTTCATTTGCTATTCGCAGTAATTAAcgtcaattgaaatacatgatTTATTCATCAtagata

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021577945.2 True 2414 mRNA 0.48 3 44804798 44807754

Neighbor

gene id symbol gene type direction distance location
LOC118942934 NA coding upstream 8508 44789670 ~ 44796290 (+)
LOC110500535 LOC106608728 coding upstream 15868 44782219 ~ 44788930 (+)
LOC110500532 LOC106608724 coding upstream 58168 44727200 ~ 44746630 (+)
chrnb1 LOC106608722 coding upstream 101077 44679665 ~ 44703721 (+)
LOC110500854 LOC106608721 coding upstream 137237 44600863 ~ 44667561 (+)
ponzr6 LOC106608790 coding downstream 53457 44861211 ~ 44862751 (+)
LOC110500539 LOC106608730 coding downstream 55441 44863195 ~ 44868678 (+)
LOC110500859 LOC106608737 coding downstream 207362 45015116 ~ 45018769 (+)
LOC110500862 LOC106608740 coding downstream 245568 45053322 ~ 45066445 (+)
LOC118942935 LOC106608740 coding downstream 266033 45073787 ~ 45074436 (+)
G1742012 NA non-coding upstream 3839 44800551 ~ 44800959 (+)
G1741994 NA non-coding upstream 38893 44765688 ~ 44765905 (+)
G1741992 NA non-coding upstream 41167 44763337 ~ 44763631 (+)
G1741989 NA non-coding upstream 45100 44759479 ~ 44759698 (+)
G1741973 NA non-coding downstream 10608 44818362 ~ 44824568 (+)
G1742029 NA non-coding downstream 30168 44837922 ~ 44839547 (+)
G1742156 NA non-coding downstream 218992 45026746 ~ 45028648 (+)
G1742167 NA non-coding downstream 235112 45042866 ~ 45045645 (+)
G1742298 NA non-coding downstream 422782 45230536 ~ 45244176 (+)
LOC110500529 LOC106608720 other upstream 332234 44461338 ~ 44480565 (+)
LOC110500528 tmem256 other upstream 353266 44446186 ~ 44451532 (+)
G1740752 NA other upstream 591568 44212786 ~ 44213230 (+)
G1740453 NA other upstream 1278072 43524736 ~ 43526726 (+)
G1740412 LOC106608825 other upstream 1334473 43469818 ~ 43470325 (+)
fcer1g LOC106608748 other downstream 636773 45444361 ~ 45449712 (+)
LOC110500870 LOC106608752 other downstream 677518 45485247 ~ 45517233 (+)
si:dkey-38p12.3 LOC106608755 other downstream 741363 45544516 ~ 45565742 (+)
G1743043 NA other downstream 831542 45639296 ~ 45639742 (+)
G1743077 NA other downstream 899388 45707142 ~ 45709950 (+)

Expression


Co-expression Network