XLOC_036304 (spata6)


Basic Information

Item Value
gene id XLOC_036304
gene name spata6
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 15287424 ~ 15305528 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00070949
AAGTTTAAAAACACTGGCGGACTGAAGACGCCCAAAATCCCTCAGCGTCACAAATGCGACAAAAAGCGAATAAATGCACCGTCGAATTAAAAGTACAAGCTATCACTTGTCCGGGGGTGATGTTACCGTCCCAAGAGGACATTTATTTAAGTGTGCGGATAATGGGTCAGTACCAAAAGTCGAAGTGTGTTCCTCCAGTTTTCCCTCTGCTGCTGCATGAAAAAATGGTGTTTGTGAAGACCTTTGTAGGAATGCTTGACCCGGCTGCTGTAGCTGAACATCTAGAGAATGATACAACGTCTTTAGAGCTCATTCAGCTTGTTCCTCCAGAGGGTGAAATCCTGGCCACGTTTGAAGCCGACACGCGGGAGTTTCTGTATCCAGGCCCTCGTCTGACTCCCAGAAGCCCCGGCCCAGAGAGAGAGATTCTGATGAAGAGATCCATCTCCTTCCCTGGAATCTCTCCCAGAGTGGAGTTTTCAACGACGTCTATTATTGAGGAGTGTGATGTGAAACATGGTCAGTCTGCCGTGTCTTCACATGGTCGATCCTCTGCTAAGCCCAGTTCTATGAGAACTTGCCTTTCTTCtgcaaaaaagaagaagaaatcagACAAAGTATCATCTTGTGGGTATGAAAAGTCAACAGTGGCATCCAGAAGCCGAGCTCCATCACCTTACACTCACCGTAAAATGTGTCAGCTGTCCGAGGAGGCCAGACAGCGACTCAGCCACCTCAAACTTGGGCCTTACACATTTCAGAAAGAGACGGCCCCTCAGGCTCCATTTGTGGTCCCCCGAAGCCCAAATACATCTCTAATGGAATCCTCCACGCATCTAACATCTCAGTCTTTTACTAAACGAAGCCCCCTAGATATGCGATTACGGAGCTACACCACAGAGCTTACAGATCCCTCTCTGCTTGGAAGCTTCAGGTCAAAGCCCTCACAGGAAGCAGCTAGAAGTTTCCCAAATAAATCTCCCAAAGACAAATCCACCCCAGCGTCCGGAATGCTTCTAGATCAGAGTCCAGTGCTGACCCGATCTTCCCTGAGAGAACGGTTCCAGAGTTCATCCAGTCCCTCGCAGTCACAGGAGATCCACAAGCGAGTGCAGAGAATCCTTAACAGACACGGACCCCGCTGCAAGCTTTCTTTTgaTAAAGAGagtgaggaggaggagaagggagTCACACAGAGTTCATGTGTTTCCGCCCACTGTGGTTCAGTGATTGACAGCCGGCTGCAACAGGACAGAAGTATTTCTGGAGAACCATCTGCTCATGTAGAAAGTGGAACATTCTGGACCAACAGAGCGACAGCAAACACAGAGACGTCCCACAGAGCAGTCTTTGAGGACAGTCTGAGCAAAATTTACAAGGAGCTCTACAAAAACGCATCACTAAACACCTGGACACAGTGACCACACACAACTCCAGATATATATGGCTGGTAAACTGCAggttttttcagttgttttgccacaaatttctGAACCCTGATGTCACTTTTTAAAACTCTGAACAGTCACTACTTTTAACAGGTTTCCTAGTGTTTAAAACATTGCATGTTGCGTTCATTTCTTTAGAGAAGTCTTGCATTTGCAGGATTATAGGTTCACATAATCCTTTTATCATACAAATAGTACAGAAACACAACTTTAGATCACCCAAAAACAAGATACGCAGTTTTTAATCATTCAATATCCAATGATAATCATTTAATATTGCTGTTTAAATATGATACAGCTttctttattgtttatatatgtgtAGAGGGAACAGTACAGTGGAAACATTTAACTAAAGTCttatttattcaatcataatGTAggtttgctgtaaaaaaaaaaaaaaacaatagtaaa
>TCONS_00070950
ATTGATTCTGTCAGACGCTCTGTATTCTTCACATCCATTGTGTCAGGATGTGCCGCCACTGTCTTCCAGgaTAAAGAGagtgaggaggaggagaagggagTCACACAGAGTTCATGTGTTTCCGCCCACTGTGGTTCAGTGATTGACAGCCGGCTGCAACAGGACAGTAGAAGTATTTCTGGAGAACCATCTGCTCATGTAGAAAGTGGAACATTCTGGACCAACAGAGCGACAGCAAACACAGAGACGTCCCACAGAGCAGTCTTTGAGGACAGTCTGAGCAAAATTTACAAGGAGCTCTACAAAAACGCATCACTAAACACCTGGACACAGTGACCACACACAACTCCAGATATATATGGCTGGTAAACTGCAggttttttcagttgttttgccacaaatttctGAACCCTGATGTCACTTTTTAAAACTCTGAACAGTCACTACTTTTAACAGGTTTCCTAGTGTTTAAAACATTGCATGTTGCGTTCATTTCTTTAGAGAAGTCTTGCATTTGCAGGATTATAGGTTCACATAATCCTTTTATCATACAAATAGTACAGAAACACAACTTTA
>TCONS_00070951
TAAAAACACTGGCGGACTGAAGACGCCCAAAATCCCTCAGCGTCACAAATGCGACAAAAAGCGAATAAATGCACCGTCGAATTAAAAGTACAAGCTACCTTTGTAGGAATGCTTGACCCGGCTGCTGTAGCTGAACATCTAGAGAATGATACAACGTCTTTAGAGCTCATTCAGCTTGTTCCTCCAGTCACATGGTCGATCCTCTGCTAAGCCCAGTTCTATGAGAACTTGCCTTTCTTCtgcaaaaaagaagaagaaatcagACAAAGTATCATCTTGTGGGTATGAAAAGTCAACAGTGGCATCCAGAAGCCGAGCTCCATCACCTTACACTCACCGTAAAATGTGTCAGCTGTCCGAGGAGGCCAGACAGCGACTCAGCCACCTCAAACTTGGGCCTTACACATTTCAGAAAGAGACGGCCCCTCAGGCTCCATTTGTGGTCCCCCGAAGCCCAAATACATCTCTAATGGAATCCTCCACGCATCTAACATCTCAGTCTTTTACTAAACGAAGCCCCCTAGATATGCGATTACGGAGCTACACCACAGAGCTTACAGATCCCTCTCTGCTTGGAAGCTTCAGGTCAAAGCCCTCACAGGAAGCAGCTAGAAGTTTCCCAAATAAATCTCCCAAAGACAAATCCACCCCAGCGTCCGGAATGCTTCTAGATCAGAGTCCAGTGCTGACCCGATCTTCCCTGAGAGAACGGTTCCAGAGTTCATCCAGTCCCTCGCAGTCACAGGA

Function

symbol description
spata6 Predicted to enable myosin light chain binding activity. Predicted to act upstream of or within spermatogenesis. Predicted to be located in sperm connecting piece. Is expressed in neural tube; spinal cord; and ventral mesoderm. Orthologous to human SPATA6 (spermatogenesis associated 6).

GO:

id name namespace
GO:0007283 spermatogenesis biological_process
GO:0097224 sperm connecting piece cellular_component
GO:0032027 myosin light chain binding molecular_function

KEGG:

id description
ko03036 Chromosome and associated proteins

ZFIN:

id description
ZDB-GENE-050417-351 Predicted to enable myosin light chain binding activity. Predicted to act upstream of or within spermatogenesis. Predicted to be located in sperm connecting piece. Is expressed in neural tube; spinal cord; and ventral mesoderm. Orthologous to human SPATA6 (spermatogenesis associated 6).

Ensembl:

ensembl_id ENSDARG00000021115

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00070949 False 1865 mRNA 0.44 13 15287424 15305528
TCONS_00070950 False 576 mRNA 0.42 3 15287628 15292197
TCONS_00070951 True 747 nonsense_mediated_decay 0.48 8 15292367 15305523

Neighbor

gene id symbol gene type direction distance location
XLOC_036303 NA coding downstream 35955 15251183 ~ 15251469 (-)
XLOC_036302 bcar3 coding downstream 57445 15084386 ~ 15229979 (-)
XLOC_036301 NA coding downstream 205759 15078036 ~ 15081665 (-)
XLOC_036300 NA coding downstream 496703 14783214 ~ 14790721 (-)
XLOC_036299 cep350 coding downstream 678140 14559378 ~ 14609284 (-)
XLOC_036305 agbl4 coding upstream 5761 15311289 ~ 15398760 (-)
XLOC_036306 bend5 coding upstream 197257 15502785 ~ 15520907 (-)
XLOC_036307 FP017128.1 coding upstream 327204 15632732 ~ 15632847 (-)
XLOC_036308 agbl4 coding upstream 327926 15633454 ~ 15991801 (-)
XLOC_036309 CR931780.2 coding upstream 610682 15916210 ~ 15916327 (-)
XLOC_036297 NA non-coding downstream 792078 14491293 ~ 14495346 (-)
XLOC_036296 NA non-coding downstream 804967 14474769 ~ 14482457 (-)
XLOC_036310 CR931780.1 non-coding upstream 756644 16062172 ~ 16064410 (-)
XLOC_036311 NA non-coding upstream 912726 16218254 ~ 16254661 (-)
XLOC_036313 NA non-coding upstream 958402 16263930 ~ 16268947 (-)

Expression


Co-expression Network